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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL76930_cuf0 >transcript:BL76930_cuf0-protein ID=transcript:BL76930_cuf0-protein|Name=transcript:BL76930_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=431bp
THKTTISTTPNPTTHKTTISTTPNPTTHKTTISTTPNPTTHKTTISTTPN
PTTHKTTISTTPNPTTHKTAITTTPNPTTHKTTLPSTLETTVPTSKNPTT
GITTIPTTKYPTTHFTTVPTTVYHTTLPTTPNPTSGKTTISTTQNPTNRP
TTITTDITTAQTTPNPTTAHKTITVTTDITAQATPNPTTAQKTTTVATDI
TTAQTTPNPTTAQKTTTVTTDITTAQTTPHPTTAQKTTTVATDITTAQTT
PNPTTAQKTTTVTTDITTAQTTPHPTTAQKTTTVTTDITTAQTTPNPTTY
VTTERPTRQTTVSTSDRTTLPTPLVTTERTTDDSTLVTTIPTTKNPTTLL
TTNSPTTFTTDLTTTQKTTPNPSTHSTTDRTTRQPTLKTSHRSTESKTIL
PSHKTTDQSTLLTTKPTTVSTTLRTTPSATT Run BLAST on NCBI mRNA from alignment at Sc0000427:149459..154726+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL76930_cuf0 ID=transcript:BL76930_cuf0|Name=transcript:BL76930_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5268bp|location=Sequence derived from alignment at Sc0000427:149459..154726+ (Branchiostoma lanceolatum)
TACACATAAAACAACAATCTCGACTACACCGAACCCTACTACACATAAAA
CAACAATCTCGACTACACCGAACCCTACTACACATAAAACAACAATCTCG
ACTACACCGAACCCTACTACACATAAAACAACAATCTCGACTACACCGAA
CCCTACTACACATAAAACAACAATCTCGACTACACCGAACCCTACTACAC
ATAAAACAGCAATCACGACAACACCGAACCCTACTACACATAAAACAACA
CTCCCGTCAACACTTGAAACGACAGTCCCGACATCAAAGAACCCTACTAC
AGGTATAACGACAATCCCGACAACAAAGTATCCTACTACACATTTCACGA
CAGTCCCGACAACAGTATATCATACTACGCTCCCGACAACTCCGAACCCT
ACTTCAGGTAAAACAACAATCTCGACTACACAGAACCCCACGAACCGCCC
TACAACAATTACCACGGATATAACAACAGCCCAGACGACTCCTAACCCTA
CAACAGCTCATAAAACAATAACAGTTACAACGGATATAACAGCCCAGGCG
ACTCCTAACCCTACAACAGCTCAGAAAACAACAACAGTTGCGACGGATAT
AACAACAGCCCAGACGACTCCTAACCCTACAACAGCTCAGAAAACAACAA
CAGTTACGACGGATATAACAACAGCCCAGACGACTCCTCACCCTACAACA
GCTCAGAAAACAACAACAGTTGCGACGGATATAACAACAGCCCAGACGAC
TCCTAACCCTACAACAGCTCAGAAAACAACAACAGTTACGACGGATATAA
CAACAGCCCAGACGACTCCTCACCCTACAACAGCTCAGAAAACAACAACA
GTTACGACGGATATAACAACAGCCCAGACGACTCCTAACCCGACAACATA
TGTGACAACCGAAAGACCAACGGTAAGGAGAATTTTTGTACTCATTCCAT
GTACACTTAACATGGCCTCCCGACCTCCTCCCGACCAAGGTTAGGAGTGA
TTCGGGAGCTAGATCGGCTGTGGTCGGCTGGTGTTCGGCTCGGTCGGCTG
GTATTCGGCTTGGTCGGCTGGTAAATCACCCCCGACCTTAAGCTTCACAC
GACCAAAAACAAAGAAAAGCCGGATTGAATCATGAAGCTTACCGTGATCC
GAATTTGATCTCTCGGTGATGTAAGCAACATATTAACTAGAAGCATGGAT
TAATTTGATTAAAAACGAAAATGACCCCTATTTTGAAAGTCGCTGAATAT
GTCCATTTTAATGAGTTAGAGGGTTAGCAATCGGTCGAGGATTAGTCAAG
AGAGATTCGGCGGTCTGCTGCTAGAAGTCGGGATGGATGGGAGTAGGTTA
GAAAGCATTCGGGGCTCAGTCGGGAGTAGGTCATTTACTAGTTAGGAGAT
GGTTGGGACATGTTAGGCGCATGTTTGGCGCCAAATATGCGTGGCCTAAA
AACTGGTCATAGCCATTTTCGGCAATGTGTAACCCGGGCTAATTATGGAG
ATGTCTAACATGACTTTTGACTATAGCTTAAGTCTAAGATCATTGCAATA
ATGCAAAATACACAAAAATCGTTTTTGTTCTTTATCTAATCAACTATCTA
TTTTCTTAACATTCAAAACATCTGTGTNGTTACAAGAACATTCTTCGAAC
AGTGACTATAGAAAAGGGTAGCGAAATACGCACCTCCAAATTTTCGACGA
CTCCTGTTCGTCTTGTTCAAGGAGTGGCCTAGTCTCGCGAGAACGAGACT
AGGCCGAGACTTGTGACGATCTTCTTGCCTCCCCCGCCTCCTTGCGGAGT
AGGGGTAAGTAGAACTTGGGCAGCTCCCAACCTCCGGTACGGTTCATCCC
AGCGCGTTCCAACTGGATGTGGACTGCCTCTTTAACCAATCAATCAATCA
ATTGATTATTTAATCAATTTTATCTTTTATCTAATCAATTATCTATTTTC
TTAACATTCAAAACATCTGTGTAGCTCCTACATTTTTTTTTTCAACGTTA
ACATTCAAAACATCTGTGTAGTTCCTACAACAATTTTGTTTCAACGGGGC
TCGGGAAACATGCTTAGTGAAAAATGTCTGGCACTTAGTTGAAGTAGTTT
GTACCTGTAAATTCAAATGTTCAGTGTCCAGCTGTAGTAGTATAGTAAGT
TAGACAATCTCCAATGGAGTGACGAACAGTATTAGATACTCTTAGAATAG
CAATGCCCAAACTATTAGATATTCTTAGAAAAAGCAATGCCCAAACTACA
CAGAAAAACTGACAAATACACACTACTAACCACACAATCAACTACAGCAT
AGACAACGCAATGGACAACTCAAACCACCACTACGGTAAAGCAATGAACA
GAATTTGATTTAAAAAAATGTTCTATAGTCTTTTCCGGGCTGCTTCTTAA
CGATGGCCTTTTATTAGACCTGTTATTATCTAACTCACGTGGCTCGATTG
CAGCTGATATCTGCGATCATTACAACGCAAAAAAAGGAATATCGCTTTTC
ATCCTTATCTTATGTAGAGACAAACAACATTAAGTACACGTTACAGAACA
ACAATGGTAACAACTGTTGTCACAACAAAGCGGAAAACTGACGATTCCAC
AATCGTTACGACAATCCCGACCACAAAGAATTCACCCACTATTATACCTA
CAGACGATCCCAACATACAAACAATGAACAGCCCCACGACAGTTACCACG
GACTTAACAACAACCCAGTCGACCCCAAACCCTACCACAGTTCCCAAAAC
AACAGCCTTAACGACACATTTTACGATAAGTCCGACCAAAAAGAAGCCAA
TTACTGTTGTAACTACGAACAACCCCAGCACACCTCAAACAACAAACAAT
CCTACGACAGTTACCACGGACTTAACAACAACCAAAATGACCCCAAACCC
AACCACTGTGCACAAAATAACAACCTTGACGACAATCCGGGCTACACCGA
ACCCTACTACAGGTGTAACGACAATAATTCCGACGACCAAACGAACAACG
GTACGGAGGCGTCTTGTACTCATTCTTAGTGTGAAATGAAATGCTAGGTT
AGACCAGCGTTAATATCCAGATACACAGAACATCTATATGCGAGATGTAA
TTGGATACGGCAAAGCAAACTATAACAACAATAACACTCTTCCGAAAGAA
AATCTAATGGTCGTTTGTAAATTTTCCAAAGTAGAAACTGCTTTAAGCAC
AGTGTCGTTAAATAACAAAGGCCAACACAAATTTGTTATAATCTAAATAC
ACACAAAAGCAAGACACATTCACACAGCCAACTTAAGTATCGACCACACA
ACGTACGCCTTAACGCTTCAATAGGGTTCAGGACCGAAAGATCTAGAGAT
TCGACCTTTCGTGAAAGACAGTCGTAAGCTTTTCTGGACATACGTTCTTT
TACAAGTCTCCCAAATCTTCCAAACATGACTTTTGGTACATGTGCATATA
CATGTATATAGATAGTCCTCCTTCTTAATCTATCTATCTATTTGTTTATT
TACCGTTCAAAACACCTGAACAGCCCCTACATACAACAATTAATTGTTTT
CCAAGAACGTCAAGGTTAAATGGAACATGGGGAAAATGGTACGTTTATCA
TAGAACAGAAATTGAAAAAACGATAGGAAACGATAGAAAGGAAATTTGAA
TAACCGGACGGAAAAATTTTACAAAACCAAATCATCAAATCAGAGTCGTT
ATCCAAAATCAAGTCCAGTACAGCTCATAGGGCAGATATCGCTGAATGTA
AGAGATCAGTTTCACGTAGCTGTTTTGAAGCTGTCTTATAAACCCTTAAG
CTGCCATTCCCGGTTTAAACAGGGATACAGAAACATGCCCTGTGTGCTGC
ACCCGGTTATAACCGGGATAGAGTATTCCCCAGAAGAAAACAGCTTTGCG
TGCATGTAGCGCGGAAAGTCCGGAAGTTAGGGGAGTTAGGGCCGCCGGCT
GTTTTTCGGGTTTTGTGAGTGAGGTCAGGGGTCAAACATTTTTTATTCTT
ACTTGGCTAAAAAGCCTGGGAGATTAAGGGTTATGTTGTGTGGCAGTTGG
TTTATTACTTTAGTACTTTGTACTTTTATACGCAACTGTTCAGTCCAGTT
GTACAGTGTAGTGAGACTGTGTAAAGCATAGACGAACTGCATTAGATACC
TCTTTTGGAGCAGCAATATGGCCACAACTGGTCAGACTACGCTTGTAACC
ACACAGCAAAGTACAGTATTGGCAATGCTCATTGCAATATCATTCCAGAG
CAAAACAGAAATATCACTTTTCTTCTTTATCTAATTGCAGAGACAAACAA
CAGTGAGCACAAGTGACAGAACAACATTACCGACACCTCTTGTCACAACA
GAGCGGACGACTGACGATTCCACACTCGTTACGACAATCCCAACCACAAA
GAATCCTACCACTCTTTTGACAACGAACAGTCCGACGACATTTACCACGG
ATTTAACAACAACACAGAAGACAACACCGAACCCTTCTACACATTCGACG
ACCGACCGAACAACAGTAAGGAGGGTTCTTACACTTATTCGTAGCGCGGA
AGAAAAGGAGAGGTTGTACTAGCGTAAATATACCGGTGTGCAGATCTTAT
TGTTTTTATATGCAAGCTGTCATTTTACCTTTCACATCGTAACCATAATA
ACATTACACCAAAAAATATAATGGTGGTTGATGAAGTTTNAATATCATGG
TGGTTGATGAAGTTTTTAAAGGGGTCAGAAATGATCGATTTTTTAAAAGC
ACTAATAGAAGAGTAGGGCCCACACATTTGCAGCACAAATTTAATAAGTT
ATAGAACAACAATGCCCTCAGCTCATCTCAGTACGCAGAGGACAAGTGAA
AAATCCACACTACTGACCACAATACCAACTACAGTATTCTCAACACTACA
GACAAGTCCATCCACAACTACGGTACAGAAACAAACCAGGCTTAAACACA
ATAACTATCAAACCGAACAACTTCATTTAACTCTTTTCCGGGTTTTGGGT
AGATATTTTTAAGAAACTTTTGAATTATTCTAACATGACTTTCTAATACG
GGTTATGGTTACAAATAACACTCATTACAATGCAAAAACATAACCATTGT
TTTTCTTTAATTCACGTAGAGACAACCTACCTTAAAAACAAGTCATAGAT
CAACAGAGTCCAAGACAATTTTACCAAGTCACAAGACAACTGACCAATCT
ACACTACTGACCACAAAGCCAACTACAGTATCGACAACGCTACGGACAAC
TCCATCCGCAACTACGGT Coding sequence (CDS) from alignment at Sc0000427:149459..154726+ >transcript:BL76930_cuf0 ID=transcript:BL76930_cuf0|Name=transcript:BL76930_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3879bp|location=Sequence derived from alignment at Sc0000427:149459..154726+ (Branchiostoma lanceolatum)
ACACATAAAACAACAATCTCGACTACACCGAACCCTACTACACATAAAAC
AACAATCTCGACTACACCGAACCCTACTACACATAAAACAACAATCTCGA
CTACACCGAACCCTACTACACATAAAACAACAATCTCGACTACACCGAAC
CCTACTACACATAAAACAACAATCTCGACTACACCGAACCCTACTACACA
TAAAACAGCAATCACGACAACACCGAACCCTACTACACATAAAACAACAC
TCCCGTCAACACTTGAAACGACAGTCCCGACATCAAAGAACCCTACTACA
GGTATAACGACAATCCCGACAACAAAGTATCCTACTACACATTTCACGAC
AGTCCCGACAACAGTATATCATACTACGCTCCCGACAACTCCGAACCCTA
CTTCAGGTAAAACAACAATCTCGACTACACAGAACCCCACGAACCGCCCT
ACAACAATTACCACGGATATAACAACAGCCCAGACGACTCCTAACCCTAC
AACAGCTCATAAAACAATAACAGTTACAACGGATATAACAGCCCAGGCGA
CTCCTAACCCTACAACAGCTCAGAAAACAACAACAGTTGCGACGGATATA
ACAACAGCCCAGACGACTCCTAACCCTACAACAGCTCAGAAAACAACAAC
AGTTACGACGGATATAACAACAGCCCAGACGACTCCTCACCCTACAACAG
CTCAGAAAACAACAACAGTTGCGACGGATATAACAACAGCCCAGACGACT
CCTAACCCTACAACAGCTCAGAAAACAACAACAGTTACGACGGATATAAC
AACAGCCCAGACGACTCCTCACCCTACAACAGCTCAGAAAACAACAACAG
TTACGACGGATATAACAACAGCCCAGACGACTCCTAACCCGACAACATAT
GTGACAACCGAAAGACCAACGAGACAAACAACAGTGAGCACAAGTGACAG
AACAACATTACCGACACCTCTTGTCACAACAGAGCGGACGACTGACGATT
CCACACTCGTTACGACAATCCCAACCACAAAGAATCCTACCACTCTTTTG
ACAACGAACAGTCCGACGACATTTACCACGGATTTAACAACAACACAGAA
GACAACACCGAACCCTTCTACACATTCGACGACCGACCGAACAACAAGAC
AACCTACCTTAAAAACAAGTCATAGATCAACAGAGTCCAAGACAATTTTA
CCAAGTCACAAGACAACTGACCAATCTACACTACTGACCACAAAGCCAAC
TACAGTATCGACAACGCTACGGACAACTCCATCCGCAACTACGACACATA
AAACAACAATCTCGACTACACCGAACCCTACTACACATAAAACAACAATC
TCGACTACACCGAACCCTACTACACATAAAACAACAATCTCGACTACACC
GAACCCTACTACACATAAAACAACAATCTCGACTACACCGAACCCTACTA
CACATAAAACAACAATCTCGACTACACCGAACCCTACTACACATAAAACA
GCAATCACGACAACACCGAACCCTACTACACATAAAACAACACTCCCGTC
AACACTTGAAACGACAGTCCCGACATCAAAGAACCCTACTACAGGTATAA
CGACAATCCCGACAACAAAGTATCCTACTACACATTTCACGACAGTCCCG
ACAACAGTATATCATACTACGCTCCCGACAACTCCGAACCCTACTTCAGG
TAAAACAACAATCTCGACTACACAGAACCCCACGAACCGCCCTACAACAA
TTACCACGGATATAACAACAGCCCAGACGACTCCTAACCCTACAACAGCT
CATAAAACAATAACAGTTACAACGGATATAACAGCCCAGGCGACTCCTAA
CCCTACAACAGCTCAGAAAACAACAACAGTTGCGACGGATATAACAACAG
CCCAGACGACTCCTAACCCTACAACAGCTCAGAAAACAACAACAGTTACG
ACGGATATAACAACAGCCCAGACGACTCCTCACCCTACAACAGCTCAGAA
AACAACAACAGTTGCGACGGATATAACAACAGCCCAGACGACTCCTAACC
CTACAACAGCTCAGAAAACAACAACAGTTACGACGGATATAACAACAGCC
CAGACGACTCCTCACCCTACAACAGCTCAGAAAACAACAACAGTTACGAC
GGATATAACAACAGCCCAGACGACTCCTAACCCGACAACATATGTGACAA
CCGAAAGACCAACGAGACAAACAACAGTGAGCACAAGTGACAGAACAACA
TTACCGACACCTCTTGTCACAACAGAGCGGACGACTGACGATTCCACACT
CGTTACGACAATCCCAACCACAAAGAATCCTACCACTCTTTTGACAACGA
ACAGTCCGACGACATTTACCACGGATTTAACAACAACACAGAAGACAACA
CCGAACCCTTCTACACATTCGACGACCGACCGAACAACAAGACAACCTAC
CTTAAAAACAAGTCATAGATCAACAGAGTCCAAGACAATTTTACCAAGTC
ACAAGACAACTGACCAATCTACACTACTGACCACAAAGCCAACTACAGTA
TCGACAACGCTACGGACAACTCCATCCGCAACTACGACACATAAAACAAC
AATCTCGACTACACCGAACCCTACTACACATAAAACAACAATCTCGACTA
CACCGAACCCTACTACACATAAAACAACAATCTCGACTACACCGAACCCT
ACTACACATAAAACAACAATCTCGACTACACCGAACCCTACTACACATAA
AACAACAATCTCGACTACACCGAACCCTACTACACATAAAACAGCAATCA
CGACAACACCGAACCCTACTACACATAAAACAACACTCCCGTCAACACTT
GAAACGACAGTCCCGACATCAAAGAACCCTACTACAGGTATAACGACAAT
CCCGACAACAAAGTATCCTACTACACATTTCACGACAGTCCCGACAACAG
TATATCATACTACGCTCCCGACAACTCCGAACCCTACTTCAGGTAAAACA
ACAATCTCGACTACACAGAACCCCACGAACCGCCCTACAACAATTACCAC
GGATATAACAACAGCCCAGACGACTCCTAACCCTACAACAGCTCATAAAA
CAATAACAGTTACAACGGATATAACAGCCCAGGCGACTCCTAACCCTACA
ACAGCTCAGAAAACAACAACAGTTGCGACGGATATAACAACAGCCCAGAC
GACTCCTAACCCTACAACAGCTCAGAAAACAACAACAGTTACGACGGATA
TAACAACAGCCCAGACGACTCCTCACCCTACAACAGCTCAGAAAACAACA
ACAGTTGCGACGGATATAACAACAGCCCAGACGACTCCTAACCCTACAAC
AGCTCAGAAAACAACAACAGTTACGACGGATATAACAACAGCCCAGACGA
CTCCTCACCCTACAACAGCTCAGAAAACAACAACAGTTACGACGGATATA
ACAACAGCCCAGACGACTCCTAACCCGACAACATATGTGACAACCGAAAG
ACCAACGAGACAAACAACAGTGAGCACAAGTGACAGAACAACATTACCGA
CACCTCTTGTCACAACAGAGCGGACGACTGACGATTCCACACTCGTTACG
ACAATCCCAACCACAAAGAATCCTACCACTCTTTTGACAACGAACAGTCC
GACGACATTTACCACGGATTTAACAACAACACAGAAGACAACACCGAACC
CTTCTACACATTCGACGACCGACCGAACAACAAGACAACCTACCTTAAAA
ACAAGTCATAGATCAACAGAGTCCAAGACAATTTTACCAAGTCACAAGAC
AACTGACCAATCTACACTACTGACCACAAAGCCAACTACAGTATCGACAA
CGCTACGGACAACTCCATCCGCAACTACG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000427 | genome | Sc0000427:149459..154726 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL76930_cuf0 |
| Biotype | protein_coding |
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