transcript:BL70727_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL70727_cuf0
Unique Nametranscript:BL70727_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL70727_cuf0

>transcript:BL70727_cuf0-protein ID=transcript:BL70727_cuf0-protein|Name=transcript:BL70727_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=167bp
DEVTKLRSCMDRSDTDGLTSENSHPLNSDALPGQPSFSFDPVTDRDVHKI
LSQLQDCKAPGPDGIENRFLKISSDTIAGPMAYIINLSFTTKTFPTRWKH
AKIIPIPKDNSKPLSGPNSRPVSLLPACGKICERIASEQIASYILKSNLN
QRHNMLTENYTPRKQPY
Run BLAST on NCBI

mRNA from alignment at Sc0000264:26346..27258-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL70727_cuf0 ID=transcript:BL70727_cuf0|Name=transcript:BL70727_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=913bp|location=Sequence derived from alignment at Sc0000264:26346..27258- (Branchiostoma lanceolatum)
GATGAGGTCACTAAGCTTCGTTCCTGCATGGACCGATCGGATACCGATGG
ATTAACATCTGAAAACTCACATCCGTTAAACTCTGATGCGTTGCCTGGTC
AGCCGTCTTTCTCTTTCGATCCTGTAACAGACAGGGACGTGCACAAAATC
CTCTCACAACTTCAGGACTGTAAAGCACCAGGTCCAGATGGTATCGAAAA
CAGGTTTCTGAAGATTAGTTCAGACACCATAGCTGGCCCAATGGCTTACA
TCATCAACCTGTCATTTACAACAAAAACCTTCCCCACACGATGGAAACAT
GCCAAAATCATTCCAATCCCCAAGGATAACAGTAAGCCACTGTCGGGGCC
AAACTCAAGACCTGTGAGTCTTCTCCCAGCTTGTGGGAAGATATGTGAGA
GAATCGCTTCTGAGCAGATTGCATCCTACATACTCAAGTCAAATCTCAAT
CAGAGGCACAACATGCTTACAGAAAACTACACTCCACGGAAACAGCCCTA
CTAAAGATGACAGACGACTGGCTAGACAACATGGACAATGGTTTCATGAC
AGCGGTAGTTTTACTAGACTACAGCGCAGCATTTGATTTAGTGGACCACA
CTTTGCTTTTAAAGAAGCTCACGACCTACGGGTTCACAGGGGATGCATTA
TCTTGGACTGAATCGTACCTGACAAACCGCAAATGGCAAGTATACACAAA
TGGAGCCTACAGCAAGCAGAGAACCTTATACTGTGGTGTGCCACAGGGAA
GCTGCTTAGGTCCGCAATTGTACAATATTTATGTAAATGACATGCCGGAG
TCTGTACAAAATGGGTCACTAGACCAATATGCTGGTGACAGCACGGTTCA
CACACGAGGACACACATTGGACGACATAAGAACAGAAACTGAAACAGACT
TAGAAAGAGTGGC

Coding sequence (CDS) from alignment at Sc0000264:26346..27258-

>transcript:BL70727_cuf0 ID=transcript:BL70727_cuf0|Name=transcript:BL70727_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=504bp|location=Sequence derived from alignment at Sc0000264:26346..27258- (Branchiostoma lanceolatum)
GATGAGGTCACTAAGCTTCGTTCCTGCATGGACCGATCGGATACCGATGG
ATTAACATCTGAAAACTCACATCCGTTAAACTCTGATGCGTTGCCTGGTC
AGCCGTCTTTCTCTTTCGATCCTGTAACAGACAGGGACGTGCACAAAATC
CTCTCACAACTTCAGGACTGTAAAGCACCAGGTCCAGATGGTATCGAAAA
CAGGTTTCTGAAGATTAGTTCAGACACCATAGCTGGCCCAATGGCTTACA
TCATCAACCTGTCATTTACAACAAAAACCTTCCCCACACGATGGAAACAT
GCCAAAATCATTCCAATCCCCAAGGATAACAGTAAGCCACTGTCGGGGCC
AAACTCAAGACCTGTGAGTCTTCTCCCAGCTTGTGGGAAGATATGTGAGA
GAATCGCTTCTGAGCAGATTGCATCCTACATACTCAAGTCAAATCTCAAT
CAGAGGCACAACATGCTTACAGAAAACTACACTCCACGGAAACAGCCCTA
CTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL70727gene:BL70727Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL70727_cuf0-E1BL70727_cuf0-E1-1564476830-414347Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL70727_cuf0transcript:BL70727_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000264genomeSc0000264:26346..27258 -
Properties
Property NameValue
Transcript idBL70727_cuf0
Biotypeprotein_coding