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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041598 ID=TCONS_00041598|Name=TCONS_00041598|organism=Clytia hemisphaerica|type=transcript|length=633bp
ATTGACTGAGAAGAATATCGATTGTGGAATTATTGTAGCTTTTCTTAGCA
TCAATAATGCAACTATTATATGCAGCTGtctaactttttcattgatttca
ctGCTTCGCTGCTTTAATATAAAACGACCTTTTCAACACATCCCAACAAA
ACTTGTTTATGTCACCATTGTATGCATCGCTGTCTTTAGCATTTCAATAG
CCTTGGTACTTGCTTGGCAATACAAAAATATGAGACAGGAAACATTCCAA
AAGATCCAACTTTTGACTTCTCTGACAATGTTTTTGTTGGTGgatttcat
tctttttataaatataatttCTTATTTGCATCTTAAGAAGAACTCGCAAA
GATTTGAGATCGAAATGCAAACATATAATAACACTGAAACAAATACTCCA
CGAAATACATCActggaaaataaaaagtcaGCTGGGAAAACTCTTCTTTT
AATATCTTTCTTCTATTCACTTTGTATGATGCCTTTTCCACTCTTTGTTA
TTTGGTCTCTGATTGATCGAACATTACTGGAATCATCCTTGTCAGTGAAG
TTTTTAAATTATTGTTACAATATTGTGATTCTCAATGGAGGAATCAATTC
AACAATTTATATTCTGcggaataagaaaataag Run BLAST on NCBI protein sequence of TCONS_00041598-protein >TCONS_00041598-protein ID=TCONS_00041598-protein|Name=TCONS_00041598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
LTEKNIDCGIIVAFLSINNATIICSCLTFSLISLLRCFNIKRPFQHIPTK
LVYVTIVCIAVFSISIALVLAWQYKNMRQETFQKIQLLTSLTMFLLVDFI
LFINIISYLHLKKNSQRFEIEMQTYNNTETNTPRNTSLENKKSAGKTLLL
ISFFYSLCMMPFPLFVIWSLIDRTLLESSLSVKFLNYCYNIVILNGGINS
TIYILRNKKI Run BLAST on NCBI transcript from alignment at sc0002929:722..1354 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041598 ID=TCONS_00041598|Name=TCONS_00041598|organism=Clytia hemisphaerica|type=transcript|length=633bp|location=Sequence derived from alignment at sc0002929:722..1354 (Clytia hemisphaerica)
cttattttcttattccgCAGAATATAAATTGTTGAATTGATTCCTCCATT
GAGAATCACAATATTGTAACAATAATTTAAAAACTTCACTGACAAGGATG
ATTCCAGTAATGTTCGATCAATCAGAGACCAAATAACAAAGAGTGGAAAA
GGCATCATACAAAGTGAATAGAAGAAAGATATTAAAAGAAGAGTTTTCCC
AGCtgactttttattttccagTGATGTATTTCGTGGAGTATTTGTTTCAG
TGTTATTATATGTTTGCATTTCGATCTCAAATCTTTGCGAGTTCTTCTTA
AGATGCAAATAAGaaattatatttataaaaagaatgaaatcCACCAACAA
AAACATTGTCAGAGAAGTCAAAAGTTGGATCTTTTGGAATGTTTCCTGTC
TCATATTTTTGTATTGCCAAGCAAGTACCAAGGCTATTGAAATGCTAAAG
ACAGCGATGCATACAATGGTGACATAAACAAGTTTTGTTGGGATGTGTTG
AAAAGGTCGTTTTATATTAAAGCAGCGAAGCagtgaaatcaatgaaaaag
ttagaCAGCTGCATATAATAGTTGCATTATTGATGCTAAGAAAAGCTACA
ATAATTCCACAATCGATATTCTTCTCAGTCAAT Coding sequence (CDS) from alignment at sc0002929:722..1354 >TCONS_00041598 ID=TCONS_00041598|Name=TCONS_00041598|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0002929:722..1354 (Clytia hemisphaerica)
tattttcttattccgCAGAATATAAATTGTTGAATTGATTCCTCCATTGA
GAATCACAATATTGTAACAATAATTTAAAAACTTCACTGACAAGGATGAT
TCCAGTAATGTTCGATCAATCAGAGACCAAATAACAAAGAGTGGAAAAGG
CATCATACAAAGTGAATAGAAGAAAGATATTAAAAGAAGAGTTTTCCCAG
CtgactttttattttccagTGATGTATTTCGTGGAGTATTTGTTTCAGTG
TTATTATATGTTTGCATTTCGATCTCAAATCTTTGCGAGTTCTTCTTAAG
ATGCAAATAAGaaattatatttataaaaagaatgaaatcCACCAACAAAA
ACATTGTCAGAGAAGTCAAAAGTTGGATCTTTTGGAATGTTTCCTGTCTC
ATATTTTTGTATTGCCAAGCAAGTACCAAGGCTATTGAAATGCTAAAGAC
AGCGATGCATACAATGGTGACATAAACAAGTTTTGTTGGGATGTGTTGAA
AAGGTCGTTTTATATTAAAGCAGCGAAGCagtgaaatcaatgaaaaagtt
agaCAGCTGCATATAATAGTTGCATTATTGATGCTAAGAAAAGCTACAAT
AATTCCACAATCGATATTCTTCTCAGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041598-exon-sc0002929-1491911889:722..1354 | TCONS_00041598-exon-sc0002929-1491911889:722..1354 | Clytia hemisphaerica | exon |
| TCONS_00041598-exon-sc0002929-1510915933:722..1354 | TCONS_00041598-exon-sc0002929-1510915933:722..1354 | Clytia hemisphaerica | exon |
| TCONS_00041598-exon-sc0002929-1575043694:722..1354 | TCONS_00041598-exon-sc0002929-1575043694:722..1354 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002929 | supercontig | sc0002929:722..1354 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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