TCONS_00041592 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041592
Unique NameTCONS_00041592
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length805

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041592 ID=TCONS_00041592|Name=TCONS_00041592|organism=Clytia hemisphaerica|type=transcript|length=805bp
CAACCCTGATTCTGCATTTAGGAGGAAATCgcaaaattttggtttctatt
TCTCCAGTCCTTGAAAAACTCCACCAACCCTAAAATACGCCAACAGAAGG
CGGTATAAAAAGGACTTAAAATACAGTATTAATCCACATTAAGTATTCTA
GAATGTCTTTTTGCAAGATCACTGTTTCGAAAATATGCTCATCATTAGTT
GCTTTTTACAAGACAATTAATCATATTGAATCGGTATGTTAAAAACCCGT
CACTTAACCAATCATGACCAAGTTATTGTCATTTTATGATGCTGACATGC
ATTTTTTCCTTAAAGATTTACAAGACAGGAGGTCAACAACATTAGTAACC
TGTGGTGACAAAGTGGTGCTCTTTACCAAGGGAGAGctaaattcaaagtt
ttttgaGGAAAGAGGAGACAGGAGGTCTGAATTTCCCCAAGCTGTTGAAA
TCCAATATATTTATAAATCCAGCGCTCAACAACAGATAAGCGAATAAGAG
TCTTATCAATGAACGGAACAGGCCCTATCCAGGACAGCATTCAATATATA
TCCTAGAAAGGTCATGAGAGTCAAGTCTGCCAACTCGTTCTCGCGAAATA
CAGAGCGGCTAGTTTTATGACAACTATACTCGAATCAAACGACTCTGTAG
GACAGTACATCCTTGCATGATCGAACCTGACAAGCATTGGCAACGACACT
ACACTAGCCAGGCATAGCCCTAAACTCTTATATCGGAGAATataccgttt
aggagtctcgctatctccaccgtgttccaccatgaaggcggtaggtaaaa
atgca
Run BLAST on NCBI

transcript from alignment at sc0002924:11877..12681

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041592 ID=TCONS_00041592|Name=TCONS_00041592|organism=Clytia hemisphaerica|type=transcript|length=805bp|location=Sequence derived from alignment at sc0002924:11877..12681 (Clytia hemisphaerica)
tgcatttttacctaccgccttcatggtggaacacggtggagatagcgaga
ctcctaaacggtatATTCTCCGATATAAGAGTTTAGGGCTATGCCTGGCT
AGTGTAGTGTCGTTGCCAATGCTTGTCAGGTTCGATCATGCAAGGATGTA
CTGTCCTACAGAGTCGTTTGATTCGAGTATAGTTGTCATAAAACTAGCCG
CTCTGTATTTCGCGAGAACGAGTTGGCAGACTTGACTCTCATGACCTTTC
TAGGATATATATTGAATGCTGTCCTGGATAGGGCCTGTTCCGTTCATTGA
TAAGACTCTTATTCGCTTATCTGTTGTTGAGCGCTGGATTTATAAATATA
TTGGATTTCAACAGCTTGGGGAAATTCAGACCTCCTGTCTCCTCTTTCCt
caaaaaactttgaatttagCTCTCCCTTGGTAAAGAGCACCACTTTGTCA
CCACAGGTTACTAATGTTGTTGACCTCCTGTCTTGTAAATCTTTAAGGAA
AAAATGCATGTCAGCATCATAAAATGACAATAACTTGGTCATGATTGGTT
AAGTGACGGGTTTTTAACATACCGATTCAATATGATTAATTGTCTTGTAA
AAAGCAACTAATGATGAGCATATTTTCGAAACAGTGATCTTGCAAAAAGA
CATTCTAGAATACTTAATGTGGATTAATACTGTATTTTAAGTCCTTTTTA
TACCGCCTTCTGTTGGCGTATTTTAGGGTTGGTGGAGTTTTTCAAGGACT
GGAGAaatagaaaccaaaattttgcGATTTCCTCCTAAATGCAGAATCAG
GGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025528XLOC_025528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041592-exon-sc0002924-1491911889:11877..12681TCONS_00041592-exon-sc0002924-1491911889:11877..12681Clytia hemisphaericaexon
TCONS_00041592-exon-sc0002924-1510915933:11877..12681TCONS_00041592-exon-sc0002924-1510915933:11877..12681Clytia hemisphaericaexon
TCONS_00041592-exon-sc0002924-1575043694:11877..12681TCONS_00041592-exon-sc0002924-1575043694:11877..12681Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002924supercontigsc0002924:11877..12681 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.178611	0.174143	0.269595	0.527514	0.642198	0.317171	0.382866	1.21856	0.150485	0.1864	0.723699	0.475731	1.18796	0.945616	0.574618	0.725474	0.223431	0.22901	0.126719	0.0662822	0.287768	0.168436	0	0.0620508	0.319554	0.285195	0.245032	0.17422	0.0660697	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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