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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041588 ID=TCONS_00041588|Name=TCONS_00041588|organism=Clytia hemisphaerica|type=transcript|length=1224bp
TCTGGTTTTCAAGTGAAGTAAATAAAGTTAGTCTTTCTTCCAGTTAGTGT
AACACACAGctcgcaggttacaggtcacaggttacaggtcaNTCTGGTTT
TCAAGTGAAGTAAATAAAGTTAGTCTTTCTTCCAGTTAGTGTAACACACA
Gctcgcaggttacaggtcacaggttacaggtcagctttaattactgtaaa
acaaagaaaatgtttgaaaaaacacttgttaatgtcaaaaatatcattCT
ATTATGAATTCAATGAGAAACGTAACATCTAGGTCAAAGTTTCAAATTGA
CAACTATGAGAAATCTTGTTTTTGGATATTAACAATGGTATTACGAATCA
TGCGAGGATATGTAAAGAGGGACAGAAATGGGATGATGTATCGCTCTTAA
AAGAgaggaaaataaatttgataggAAGTGACCAAAgtataaacaaaaac
atcaaaatggcTCCTCAATTACGTAATCTTCTTCAACGAAAAGTTACTTC
GACTATTGGAATTGGTATTGGTTTAGGATTAGCTTCTGCATTTACCTGGA
AATTCGCTCACGCAGATCCCAAGAGAGCAAAATACGAAGCATTCTATAAA
AACTATGATGCAGAGGCTGAAGCCAAAGCCCTTGAAGCAAGACTAGCTGC
AGCTGGAAAATAGATATTTTGGAAGTGACCaacaatgtttttttaatttt
attgatGAATATTGTGTAATTGAATTGTTTATAAAAAAGTTCTTACATCA
GATTTTTTTGATTCCGTCAATTTATTCTCCTTTAACCCATAGAGAAAACA
GTTTGAAAATCCATGCTAGTGCTGATTAAGTTAGGATTTACAATTCCTCA
GCTTTCTGAAACATATTCTGACTATGACTGTTCCAATGCCCCAAgaattg
atttttgatgacttgGATAACTTAAGTTTTTCTTTGCACAGTATACCTTA
AGTGTATTGATTTTGGCATGTCCTTAATTTGGcggtatttaatttggcgg
atttcggaatttgtaaaatttggcgaatggggaaatttataataaaaaat
tacttagttttttaataaaattttaggtttttacctaaaatgatgatttt
atatagaatttttatctttaaaagattttgttaaatttggtgAGTGTTTT
TGGCAGAGGgtcaatttaaaaaatgttggcgggtatttgaatttaattcc
agccaaaattaattcaaaaagtac Run BLAST on NCBI transcript from alignment at sc0002923:6433..9068- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041588 ID=TCONS_00041588|Name=TCONS_00041588|organism=Clytia hemisphaerica|type=transcript|length=2636bp|location=Sequence derived from alignment at sc0002923:6433..9068- (Clytia hemisphaerica)
TCTGGTTTTCAAGTGAAGTAAATAAAGTTAGTCTTTCTTCCAGTTAGTGT
AACACACAGCTCGCAGGTTACAGGTCACAGGTTACAGGTCANTCTGGTTT
TCAAGTGAAGTAAATAAAGTTAGTCTTTCTTCCAGTTAGTGTAACACACA
GCTCGCAGGTTACAGGTCACAGGTTACAGGTCAGCTTTAATTACTGTAAA
ACAAAGAAAATGTTTGAAAAAACACTTGTTAATGTCAAAAATATCATTCT
ATTATGAATTCAATGAGAAACGTAACATCTAGGTCAAAGTTTCAAATTGA
CAACTATGAGAAATCTTGTTTTTGGATATTAACAATGGTATTACGAATCA
TGCGAGGATATGTAAAGAGGGACAGAAATGGGATGATGTATCGCTCTTAA
AAGAGAGGAAAATAAATTTGATAGGAAGGTGCGAGAACTGGCCTTTCTTC
TACAAGGTTACACTTTATCATAATGCAAAGAATGCATGCAAGTTTTATAT
TAGTACTATCTTTTTGCATAGTATTACCTTAAGGGGATTAATTTTCGCGG
GGATTATATTTCGCGAATTTCGCGAGTTTTTCCAAAATTTGCAAAAATTA
ATCCTCGCAAAAATTTTAAAAACCTTTGGATTTGCGAAATTCGCAAAATA
AAATCCTCGCAAAAATTTTAAAAACCTTTGGATTTGCGAAATTCGCAAAA
TAAAATCCTCGCAAAAATTAAGTTTTTAGAGATACGTAATTTTAAGGGGT
TTTTTAGACATAATTTCCCTTTGTTTAAACAAAAAACAAGCCAATTTCTC
GCAAAACTCGCGAAATTTGATCCTCGCGAAAATTTAGAATTCCCGTCTTC
GCGAAAATAAGTCCCGCAAAAATTAAATTATTTCGCGAAAAAATTGTCTC
GCAAAAATAAGTCCCGCGAAAATTTATCCCCTTAAGGTCGCATATTTTCC
TATGAAACCTCACCACAGCAAATTTGCTGCCATTGCACCTGCATATAATC
CAAGATGGCGAGATAAAAATCAAAAAGGTATATTAAAACAATATAGTAAG
ACTAGTAACTAGACTAATAACTGATCAATAGGGGTGGTAGTTTTCTACCA
CTTTAAAGGGTGGGCTAAAAAATCAAATTAGATCGGACAGAGATCAATAA
TTTTCAACACAGAAAATCTTAGTCCCGGAGGGGGGGGGCTTTCTAAAGAA
AAAATCTGAACAAGGGGGATTGGAAATTCTCCTGGAAAAGGGAGGGACTG
ATATATATATTCTCAACAAGTGGTATTATTGACCAGACATTTTCAATCTC
GAAAGATTTTTTCTAATTTCTAGGGGATTGAAGATTTGTTGATTGTGGTC
ACATTTTGAGGTCCAAGTACAGAAAGCTTAGAGATATTTACTTTGCCTAT
TCACCCATATCACCGTTATCATTACAAACCATTCAAAGATATGTTTTTTT
CGAATTGAGGAGAAATCTTATACGAGCAAGCCAAATGTTCGATACAAAAA
AAGTAGGCTCCAAGAAAAAAGTTTTTCAGGCACACCTTTTACAATTTATT
ACAATGATGAAAACTTGAGTAAAGTTGGTATCTCAAAACTGTACTTTGAA
AATAACAGCTGGTAATAAATTAATNAGTTGGTATCTCAAAACTGTACTTT
GAAAATAACAGCTGGTAATAAATTAATTAGTAGTAGCTAACTTCAATTAG
AAGTAAAATATTTCCAGAAATCAATGGTTTTATGGCAAATATGGAACGAG
TCATAATTAAATATACAAAAAGGAAATGTGATTCTAAGGTCATCAATCCA
CCTTATTCTTTTCTTTAATGAGTTGTGTTTTTTTATTCAGTGACCAAAGT
ATAAACAAAAACATCAAAATGGCTCCTCAATTACGTAATCTTCTTCAACG
AAAAGTTACTTCGACTATTGGAATTGGTATTGGTTTAGGATTAGCTTCTG
CATTTACCTGGAAATTCGCTCACGCAGATCCCAAGAGAGCAAAATACGAA
GCATTCTATAAAAACTATGATGCAGAGGCTGAAGCCAAAGCCCTTGAAGC
AAGACTAGCTGCAGCTGGAAAATAGATATTTTGGAAGTGACCAACAATGT
TTTTTTAATTTTATTGATGAATATTGTGTAATTGAATTGTTTATAAAAAA
GTTCTTACATCAGATTTTTTTGATTCCGTCAATTTATTCTCCTTTAACCC
ATAGAGAAAACAGTTTGAAAATCCATGCTAGTGCTGATTAAGTTAGGATT
TACAATTCCTCAGCTTTCTGAAACATATTCTGACTATGACTGTTCCAATG
CCCCAAGAATTGATTTTTGATGACTTGGATAACTTAAGTTTTTCTTTGCA
CAGTATACCTTAAGTGTATTGATTTTGGCATGTCCTTAATTTGGCGGTAT
TTAATTTGGCGGATTTCGGAATTTGTAAAATTTGGCGAATGGGGAAATTT
ATAATAAAAAATTACTTAGTTTTTTAATAAAATTTTAGGTTTTTACCTAA
AATGATGATTTTATATAGAATTTTTATCTTTAAAAGATTTTGTTAAATTT
GGTGAGTGTTTTTGGCAGAGGGTCAATTTAAAAAATGTTGGCGGGTATTT
GAATTTAATTCCAGCCAAAATTAATTCAAAAAGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041588-exon-sc0002923-1575043694:8641..9068 | TCONS_00041588-exon-sc0002923-1575043694:8641..9068 | Clytia hemisphaerica | exon |
| TCONS_00041588-exon-sc0002923-1575043694:6433..7228 | TCONS_00041588-exon-sc0002923-1575043694:6433..7228 | Clytia hemisphaerica | exon |
| TCONS_00041588-exon-sc0002923-1510915933:8641..9068 | TCONS_00041588-exon-sc0002923-1510915933:8641..9068 | Clytia hemisphaerica | exon |
| TCONS_00041588-exon-sc0002923-1510915933:6433..7228 | TCONS_00041588-exon-sc0002923-1510915933:6433..7228 | Clytia hemisphaerica | exon |
| TCONS_00041588-exon-sc0002923-1491911889:8641..9068 | TCONS_00041588-exon-sc0002923-1491911889:8641..9068 | Clytia hemisphaerica | exon |
| TCONS_00041588-exon-sc0002923-1491911889:6433..7228 | TCONS_00041588-exon-sc0002923-1491911889:6433..7228 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002923 | supercontig | sc0002923:6433..9068 - |
Blast
The following BLAST results are available for this feature:
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