transcript:BL95910_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95910_evm0
Unique Nametranscript:BL95910_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95910_evm0

>transcript:BL95910_evm0-protein ID=transcript:BL95910_evm0-protein|Name=transcript:BL95910_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=198bp
MADSAELFSQLVAFLLFVSFLQFVGGLVLAQIFGRGVSRVDKWVLVWLFY
DATVHFTFEGPFVYFSLVGTVAKSDSLLTEVWKEYGKADSRWLHSDPTIV
SLEILTVVLDGLLCLVAVYAICKDKHYRHFVQITLCWMTFCPEWLTGSPS
LDTSNALYLWIYLVFFNGLWVVVPGLLMLQSWGELRDLHRGQKTAKRK
Run BLAST on NCBI

mRNA from alignment at Sc0000202:285168..287339-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95910_evm0 ID=transcript:BL95910_evm0|Name=transcript:BL95910_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=2172bp|location=Sequence derived from alignment at Sc0000202:285168..287339- (Branchiostoma lanceolatum)
ATGGCGGACTCTGCAGAACTTTTCTCCCAACTTGTTGCTTTCTTGCTGTT
CGTCTCGTTCTTGCAGTTCGTGGGCGGCCTAGTTTTGGCGCAGATTTTCG
GCAGAGGAGTTTCCAGGGTGGACAAATGGGTGCTCGTGTGGCTGTTCTAT
GACGCTACCGTCCATTTTACCTTCGTAAGTTGGACCTATGCTATGTTCAA
AGTCCACAAAACCTTTTTTAATGTAACGTTACAGCATCAGCCCAGGCAGG
ATCCTAGAAACATTACTAAAATGAAAGTACAGACCACCGAAATTAGTTAA
GTTCGACTCCTATTCCATTCACAAATGTTACATGTATATATAAAAACCGT
GAAAACATATTAGAGCTAAGTTTCGAGGCCAGAGTGGACACGCCCCCTCA
CCCGGCTTAATTAAGGGTGGTGGGTTGGTAGGTTGGTTGGGGGGTGGTGT
GGTGTTATGTATGAAGAAAAAAGTGAACTAATTTTCCCTCGGTGTATCTT
TATTCCAGGAGGGACCATTTGTATACTTCTCACTTGTCGGAACTGTTGCG
AAATCAGACAGCCTGCTGACGGAAGTGTGTAAGTAACTTTGAAATTATGG
TTTTCACCAAGAATTCACAAGAAGAATAACTGTAAATTGATATTTGGTGC
AGGGAGTTAATTTTGGAGTAGGGAGAGAAAGGAGACTTTCACAGAGCTTT
ACGTTTGCAGTTGAAACAACTGTAGTATAAATGCATTGCAAGACAAGATC
TGGACACAACAGGCAGACGCCTTCTATCCTGCAAGCGGTATCAAGGTATG
AAGACAGAGCAAACTTAAAAGAAACCATGCATGGCAGAGATTTAATGTTT
GAAGGGATCTAACGTTAAATCAACACAGAAGGCCTGCTTGCTTCCCACAC
CCATTTGAATTAACCACCGAGTCTGTTTCGCTCATTTAAAAAAGATTAAA
CAAGGAGAATATTTGACAACATTGGAAAGGCTATGTATATATATATATGA
TGATTTTGTATTAATTTCCCTGATCTTATGGAGAAATATACACCTCGGGG
ATAGATACAAATAGATACTAAGAGTATTTAACCCTATACATGTATTATCC
TCCCCCCAGGGAAGGAGTACGGTAAGGCCGACTCCCGCTGGCTGCACTCT
GACCCCACCATCGTGTCGCTGGAGATCCTGACGGTCGTGTTAGACGGACT
CCTATGTCTGGTGGCTGTCTACGCCATCTGCAAGGACAAACACTACAGGT
AATAAACATTACTGGTAACAAACATTACAGGTAATTTTGGCTTAGCCATG
TAATGCATACTAGTAGCTTCAAACAGAGCCCATACTCATTGGTTTTAAAA
GTTGTGCATATATACAAATGTATAATCATTGGCATTGTATGGTAATATTT
TCTCCTTGGCTGCTGTATCTCTCCTTGTGTATTCAATATTTTATTGTCTT
TGCAGGCACTTTGTCCAGATCACTCTGTGTGTCTGAGAGTTGTATGGAGG
TGGGTTAATTTTAATACGTGGTGTCAACTGTTGATGTTTGAATATTACGG
TAGCATTTGAACTTCATATTCCTATCTTAAATGGTAAATATGATCTTTAA
TTTTTTTTTTTTACATCAGAAAAAAAGAAAAGCGGCAAAATCAGTGTAGC
AGGCCCCAATCTACACCTGGTCAGAATAAACCTGGGTATATTCAGAGTGG
CCAGGGGCAGAGTCCGGCTTGCTACACCTGTAACTAAGAAAGCTTTTGAT
TGGCCTAATTTACAAAAGTCTAGTAGATCATTATTGTTGCACATCTTCTT
TGAATTTTCAGACAGCTGGGAGGCCCATTCAATTTTAACAAAAATTGATT
TTCAATGGGGCCCAGACTACAAAACAGTAAAATCATCAGTATGACAGCGA
AAATATACTTATGAGAAAATTTATTTCTTTATCATTTTCTACTACTCTCT
ATTAAACATAATACCTTTGTTCCATGGCCAGGTTGGATGACGTTCTGCCC
TGAATGGCTGACAGGCAGCCCCAGTCTGGACACCAGTAACGCCCTGTACC
TGTGGATCTATCTGGTGTTCTTTAACGGCCTGTGGGTGGTGGTGCCCGGG
CTACTGATGCTTCAGTCATGGGGGGAACTCAGGGACCTACACAGGGGGCA
GAAAACAGCCAAGCGGAAATAG

Coding sequence (CDS) from alignment at Sc0000202:285168..287339-

>transcript:BL95910_evm0 ID=transcript:BL95910_evm0|Name=transcript:BL95910_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=2985bp|location=Sequence derived from alignment at Sc0000202:285168..287339- (Branchiostoma lanceolatum)
ATGGCGGACTCTGCAGAACTTTTCTCCCAACTTGTTGCTTTCTTGCTGTT
CGTCTCGTTCTTGCAGTTCGTGGGCGGCCTAGTTTTGGCGCAGATTTTCG
GCAGAGGAGTTTCCAGGGTGGACAAATGGGTGCTCGTGTGGCTGTTCTAT
GACGCTACCGTCCATTTTACCTTCGAGGGACCATTTGTATACTTCTCACT
TGTCGGAACTGTTGCGAAATCAGACAGCCTGCTGACGGAAGTGTGGAAGG
AGTACGGTAAGGCCGACTCCCGCTGGCTGCACTCTGACCCCACCATCGTG
TCGCTGGAGATCCTGACGGTCGTGTTAGACGGACTCCTATGTCTGGTGGC
TGTCTACGCCATCTGCAAGGACAAACACTACAGGCACTTTGTCCAGATCA
CTCTGTGTTGGATGACGTTCTGCCCTGAATGGCTGACAGGCAGCCCCAGT
CTGGACACCAGTAACGCCCTGTACCTGTGGATCTATCTGGTGTTCTTTAA
CGGCCTGTGGGTGGTGGTGCCCGGGCTACTGATGCTTCAGTCATGGGGGG
AACTCAGGGACCTACACAGGGGGCAGAAAACAGCCAAGCGGAAATAGATG
GCGGACTCTGCAGAACTTTTCTCCCAACTTGTTGCTTTCTTGCTGTTCGT
CTCGTTCTTGCAGTTCGTGGGCGGCCTAGTTTTGGCGCAGATTTTCGGCA
GAGGAGTTTCCAGGGTGGACAAATGGGTGCTCGTGTGGCTGTTCTATGAC
GCTACCGTCCATTTTACCTTCGAGGGACCATTTGTATACTTCTCACTTGT
CGGAACTGTTGCGAAATCAGACAGCCTGCTGACGGAAGTGTGGAAGGAGT
ACGGTAAGGCCGACTCCCGCTGGCTGCACTCTGACCCCACCATCGTGTCG
CTGGAGATCCTGACGGTCGTGTTAGACGGACTCCTATGTCTGGTGGCTGT
CTACGCCATCTGCAAGGACAAACACTACAGGCACTTTGTCCAGATCACTC
TGTGTTGGATGACGTTCTGCCCTGAATGGCTGACAGGCAGCCCCAGTCTG
GACACCAGTAACGCCCTGTACCTGTGGATCTATCTGGTGTTCTTTAACGG
CCTGTGGGTGGTGGTGCCCGGGCTACTGATGCTTCAGTCATGGGGGGAAC
TCAGGGACCTACACAGGGGGCAGAAAACAGCCAAGCGGAAATAGATGGCG
GACTCTGCAGAACTTTTCTCCCAACTTGTTGCTTTCTTGCTGTTCGTCTC
GTTCTTGCAGTTCGTGGGCGGCCTAGTTTTGGCGCAGATTTTCGGCAGAG
GAGTTTCCAGGGTGGACAAATGGGTGCTCGTGTGGCTGTTCTATGACGCT
ACCGTCCATTTTACCTTCGAGGGACCATTTGTATACTTCTCACTTGTCGG
AACTGTTGCGAAATCAGACAGCCTGCTGACGGAAGTGTGGAAGGAGTACG
GTAAGGCCGACTCCCGCTGGCTGCACTCTGACCCCACCATCGTGTCGCTG
GAGATCCTGACGGTCGTGTTAGACGGACTCCTATGTCTGGTGGCTGTCTA
CGCCATCTGCAAGGACAAACACTACAGGCACTTTGTCCAGATCACTCTGT
GTTGGATGACGTTCTGCCCTGAATGGCTGACAGGCAGCCCCAGTCTGGAC
ACCAGTAACGCCCTGTACCTGTGGATCTATCTGGTGTTCTTTAACGGCCT
GTGGGTGGTGGTGCCCGGGCTACTGATGCTTCAGTCATGGGGGGAACTCA
GGGACCTACACAGGGGGCAGAAAACAGCCAAGCGGAAATAGATGGCGGAC
TCTGCAGAACTTTTCTCCCAACTTGTTGCTTTCTTGCTGTTCGTCTCGTT
CTTGCAGTTCGTGGGCGGCCTAGTTTTGGCGCAGATTTTCGGCAGAGGAG
TTTCCAGGGTGGACAAATGGGTGCTCGTGTGGCTGTTCTATGACGCTACC
GTCCATTTTACCTTCGAGGGACCATTTGTATACTTCTCACTTGTCGGAAC
TGTTGCGAAATCAGACAGCCTGCTGACGGAAGTGTGGAAGGAGTACGGTA
AGGCCGACTCCCGCTGGCTGCACTCTGACCCCACCATCGTGTCGCTGGAG
ATCCTGACGGTCGTGTTAGACGGACTCCTATGTCTGGTGGCTGTCTACGC
CATCTGCAAGGACAAACACTACAGGCACTTTGTCCAGATCACTCTGTGTT
GGATGACGTTCTGCCCTGAATGGCTGACAGGCAGCCCCAGTCTGGACACC
AGTAACGCCCTGTACCTGTGGATCTATCTGGTGTTCTTTAACGGCCTGTG
GGTGGTGGTGCCCGGGCTACTGATGCTTCAGTCATGGGGGGAACTCAGGG
ACCTACACAGGGGGCAGAAAACAGCCAAGCGGAAATAGATGGCGGACTCT
GCAGAACTTTTCTCCCAACTTGTTGCTTTCTTGCTGTTCGTCTCGTTCTT
GCAGTTCGTGGGCGGCCTAGTTTTGGCGCAGATTTTCGGCAGAGGAGTTT
CCAGGGTGGACAAATGGGTGCTCGTGTGGCTGTTCTATGACGCTACCGTC
CATTTTACCTTCGAGGGACCATTTGTATACTTCTCACTTGTCGGAACTGT
TGCGAAATCAGACAGCCTGCTGACGGAAGTGTGGAAGGAGTACGGTAAGG
CCGACTCCCGCTGGCTGCACTCTGACCCCACCATCGTGTCGCTGGAGATC
CTGACGGTCGTGTTAGACGGACTCCTATGTCTGGTGGCTGTCTACGCCAT
CTGCAAGGACAAACACTACAGGCACTTTGTCCAGATCACTCTGTGTTGGA
TGACGTTCTGCCCTGAATGGCTGACAGGCAGCCCCAGTCTGGACACCAGT
AACGCCCTGTACCTGTGGATCTATCTGGTGTTCTTTAACGGCCTGTGGGT
GGTGGTGCCCGGGCTACTGATGCTTCAGTCATGGGGGGAACTCAGGGACC
TACACAGGGGGCAGAAAACAGCCAAGCGGAAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95910gene:BL95910Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95910_evm0transcript:BL95910_evm0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95910_evm0-E1BL95910_evm0-E1-1564476830-385189Branchiostoma lanceolatumexon
BL95910_evm0-E2BL95910_evm0-E2-1564476830-385187Branchiostoma lanceolatumexon
BL95910_evm0-E3BL95910_evm0-E3-1564476830-385185Branchiostoma lanceolatumexon
BL95910_evm0-E4BL95910_evm0-E4-1564476830-385183Branchiostoma lanceolatumexon
BL95910_evm0-E5BL95910_evm0-E5-1564476830-385181Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000202genomeSc0000202:285168..287339 -
Properties
Property NameValue
Transcript idBL95910_evm0
Biotypeprotein_coding