TCONS_00041081 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041081
Unique NameTCONS_00041081
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length226

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041081 ID=TCONS_00041081|Name=TCONS_00041081|organism=Clytia hemisphaerica|type=transcript|length=226bp
CCTGGAGAGCTTGATCGACCAGTTTAACGTTCGTTACTGAAATTGAACCG
ATGAAGACGACAACTGGATTGTTACTTCCATAACATAGGATTTCGCCACC
TTCCAAACTAGGTACAAGCtgtaaaaagtagaaaaagtaatgagttTTGG
TACAACAGTCCAGTCTTTGTGGCTCAAGCAGAGTCCAGTATACTACGACT
ACGTAGTCGATCGAGTTATGGGGCGT
Run BLAST on NCBI

transcript from alignment at sc0002696:8693..8918

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041081 ID=TCONS_00041081|Name=TCONS_00041081|organism=Clytia hemisphaerica|type=transcript|length=226bp|location=Sequence derived from alignment at sc0002696:8693..8918 (Clytia hemisphaerica)
ACGCCCCATAACTCGATCGACTACGTAGTCGTAGTATACTGGACTCTGCT
TGAGCCACAAAGACTGGACTGTTGTACCAAaactcattactttttctact
ttttacaGCTTGTACCTAGTTTGGAAGGTGGCGAAATCCTATGTTATGGA
AGTAACAATCCAGTTGTCGTCTTCATCGGTTCAATTTCAGTAACGAACGT
TAAACTGGTCGATCAAGCTCTCCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025098XLOC_025098Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041081-exon-sc0002696-1491911889:8693..8918TCONS_00041081-exon-sc0002696-1491911889:8693..8918Clytia hemisphaericaexon
TCONS_00041081-exon-sc0002696-1510915933:8693..8918TCONS_00041081-exon-sc0002696-1510915933:8693..8918Clytia hemisphaericaexon
TCONS_00041081-exon-sc0002696-1575043694:8693..8918TCONS_00041081-exon-sc0002696-1575043694:8693..8918Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002696supercontigsc0002696:8693..8918 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.730182	0.673392	0.623453	1.05485	437.822	394.424	153.655	217.678	26.9015	14.9155	18.3455	12.2865	6.16155	3.93488	0	1.21832	11.6353	7.44023	0	1.19253	0.394454	0.113347	0.751286	0	4.08156	4.76703	0	0	0	1.88829
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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