TCONS_00045249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045249
Unique NameTCONS_00045249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045249 ID=TCONS_00045249|Name=TCONS_00045249|organism=Clytia hemisphaerica|type=transcript|length=831bp
CTCGTTGACAATTTAATCACCCATTTTTTTGAGAACCGATTTAATTCAAA
AACTACTGaaccaattttaaaaagtaacagctcaaaatttaagttagatc
AGGTTAGACCTTCAGCTttcttaggggggggggttgtaggggttTGAAAT
ACCGTTTTACCGTCAAAACTTTTGCTGAATCCTGGAATTccgtaaaataa
aaaacaatcaataacaccgtcacaccggtttgtagagGTTAAGATACcgg
caaaatgacaaaaaataaggctaaaaacgTCACCGTCTGTATTTTAAAGT
ACCATTTTCCCATCTCTTTTTCGTCAAATActgtaataccgtactaaaat
aGGACCAATCCCGACACatcgtaaaagtacaaaccccccctgTTTGAAGG
TGTTGCCAAACATCCAAAGCTTTTTTTTGACCACCCagtattatttcatt
tttagccTGACTTGATTACAACAatagaacttttgatttttttaatttta
taaaaaaactctaGAAATTATGCTTTGTATCTAGTACACCCAGTAGAAAA
AAAGCCTAACTTACCATGTTCAAAGAAGTATTATATATCAATAGGTGGTT
TATTTTAAGtagctttgttttgatttctaaaAGGAATAAGATAAATAGTT
AGTGCAGTGTCTATTGCAAAAGGTGAAgtaattcttcatttttaaattgG
AATGGTATTGACAAGAGGTATTAAAAGTGATTTAGAAGAAATCAATTTTT
GAGGTTCCAACATTCAAGTTTTGTATCAGATCTACCTTCAGATAGTTTAG
AAAATCTGATtttaataaaccagctgcgctg
Run BLAST on NCBI

transcript from alignment at sc0007307:176..1006

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045249 ID=TCONS_00045249|Name=TCONS_00045249|organism=Clytia hemisphaerica|type=transcript|length=831bp|location=Sequence derived from alignment at sc0007307:176..1006 (Clytia hemisphaerica)
cagcgcagctggtttattaaaATCAGATTTTCTAAACTATCTGAAGGTAG
ATCTGATACAAAACTTGAATGTTGGAACCTCAAAAATTGATTTCTTCTAA
ATCACTTTTAATACCTCTTGTCAATACCATTCcaatttaaaaatgaagaa
ttacTTCACCTTTTGCAATAGACACTGCACTAACTATTTATCTTATTCCT
tttagaaatcaaaacaaagctaCTTAAAATAAACCACCTATTGATATATA
ATACTTCTTTGAACATGGTAAGTTAGGCTTTTTTTCTACTGGGTGTACTA
GATACAAAGCATAATTTCtagagtttttttataaaattaaaaaaatcaaa
agttctatTGTTGTAATCAAGTCAggctaaaaatgaaataatactGGGTG
GTCAAAAAAAAGCTTTGGATGTTTGGCAACACCTTCAAAcagggggggtt
tgtacttttacgatGTGTCGGGATTGGTCCtattttagtacggtattaca
gTATTTGACGAAAAAGAGATGGGAAAATGGTACTTTAAAATACAGACGGT
GAcgtttttagccttattttttgtcattttgccgGTATCTTAACctctac
aaaccggtgtgacggtgttattgattgttttttattttacggAATTCCAG
GATTCAGCAAAAGTTTTGACGGTAAAACGGTATTTCAaacccctacaacc
cccccccctaagaaAGCTGAAGGTCTAACCTgatctaacttaaattttga
gctgttactttttaaaattggttCAGTAGTTTTTGAATTAAATCGGTTCT
CAAAAAAATGGGTGATTAAATTGTCAACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028831XLOC_028831Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045249-exon-sc0007307-1491911889:176..1006TCONS_00045249-exon-sc0007307-1491911889:176..1006Clytia hemisphaericaexon
TCONS_00045249-exon-sc0007307-1510915933:176..1006TCONS_00045249-exon-sc0007307-1510915933:176..1006Clytia hemisphaericaexon
TCONS_00045249-exon-sc0007307-1575043694:176..1006TCONS_00045249-exon-sc0007307-1575043694:176..1006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007307supercontigsc0007307:176..1006 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.4307	14.5171	22.539	23.8822	1.9999	1.76269	0.439989	1.23574	22.3021	23.0405	29.5871	23.628	26.3643	26.3553	26.8822	31.8726	28.6027	28.7463	6.85151	6.28134	20.515	19.2867	14.4531	16.7669	0.0612394	0.601201	11.7316	11.2683	11.8386	10.0621
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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