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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041016 ID=TCONS_00041016|Name=TCONS_00041016|organism=Clytia hemisphaerica|type=transcript|length=2272bp
TCACCGACAACATAAAATTAtttattcaataaaaaaatcgatTCCTAATT
CGTACTTATAaggtaaaaaattttcagtgattttaaATTGTCATATGAAC
TTCTTTTTAAATGTCTACTACTAGCATTAAAGAAGCGCTACTAATgcatt
tttcaacaaacaaacaaattaaGTCCCagtgaaatcttaaaaattttgcg
gatgagctcaaccacaaatttaatccccgtgaaAAGTTATCCCGTTAAAA
TGAgtttctaaaaagaaaattagGCAATATATCATCATAAAAGACAACTT
AAATCATGACCACCACTTTTATTTCGTGCTAATTTATATAAATTCTACTC
CACTCATTTCATACACTTCTTACACGGTCTTTGCTGCTAGACGTCAGATA
CATGAATGAAAAAAGTTCATTTCTTCAAGCCCAAAAACTGTTTGAAACGG
GTACTTAGCGATCTTTTTACTGCTTTGAAATTCAACACTTGATTGTCTTC
AACAATTAGAACATTCGAACATAGACTTATCGAATTGTCGAGTTCAACAA
AGAATTTAAGTTTAGTCTCTTGACAGCAAAAACCATTCGGAAAATCCgca
caaaatttattttcaacgtCTTTAACTGACACATCTGAGAGGGCAATAGC
AAATGTCTTTTGAAAAGGTTCGGGTGACTGGCAATCGTCGCAACGTTGTA
TTTGAACATTAACATTTCTGAAAACCCGCAAAAAGAAAGATCCGATGCAT
TTCCGTTCCAATTCGTAAATATACATTTCGTCTTTTGGTAAGTTGAAGTC
CTgatcattaaaaaatatatttttctcttgTAGCTGTGCTTTATATAATT
CTTGATAAGTTTCAACTGGTGGATATACGGTAAATTGTATTTTAGTAGTC
TCTAATAAAGCTTTTTCAACGTCCATTAAAGTTGCAGTTTCCTTTATACG
AATAGTTTGTGGAACACCTAACCTTTGGGTATGTGAGCTGTCATAAGGAC
ATTCAAGATCTATATTAATAAAATTCGGTTCTTTTGATATCAGATTCAGA
ATTAAGCATCTGTTGAGCCTCTCTTCAGAAGTACCATGATCCAGAAATAG
ATCAACaaacattgaaatattttggatttcTTGACCATGATGCATATAAA
CTTGTAAGTGCTTTGGGATCTTCCAATCTCTATCAATGAAGTCttgcaaa
atatgaaaaaatttatAATCCGACATCTTCAACTTCTCCACTCTGGTCAA
AGATTTCAAAACTAACGTTTCAACTTTTAATATTgagaaataaaaatctt
ttctcTTTTCCTCATCAAGGCAACCACCCACAAGAGATAGTTCTAAATAA
ACAATTTCTTTAAATTCCTCTATGTTTGACGAAAAAAACAAGTCTTCAAG
ACGGGCAAAAGACTTCAATGGCCGCTTTGTAGAAGTACTGTTACCCGATT
TATTCAAGTTCACAATATCATCCACTAACTTCAAGGTGTATTTTGACGAA
ATTAATCCATAGTTACGATACATCAAACTTTGAACACATTTTAACCAGTG
TCTTTGCCCATTAATGGATGATAgatcaagaatattttcaataagAATAG
CTTTAGAACGGCCTTCAATAATCTTGACACACCGTGCTTGCATCAGGTCA
AATTTCTTAGCTAATTTGTCAATAACAATTTGATCACCACCGTTACAATA
GTTTCTCAATGCAATCTTGACAACTGCTGGTCTATTGGACACCAAAATCT
CCTCATCATGCCAACGATTATCTTGGATACCAATTTTATAGGTTAAGCTT
TGATCGCCAAGATAGAGGATTAGAAAATTAAAAGGAACACCAAGATCTTC
TCTTAGAAATATCAAAAGATTTATAGGTGTAATATCATTGGTTTTGGGTG
GTGGATACCATTTACAAAGTGTTTTACCAGACGTGTTTTGGATAGTGACA
TAAAATAATTCTTCGTTGTCATTGGATGTTGAAACAGGGTTTTGACAAGG
AAGCATCACTGTTTTCTTCTTCTATTCTTCTGCAAAGGGTGCTTGCGACC
ATTACCGGCGTGAAATGCAAATTATTACAACTCCTTTATTCCAAGAATCC
TCATGAGAATCTAGGTAATCCTTCGAGGGATTTGAATGAGGATCTCTATC
ATCATCTTATTCTATTCTTCAAAGGGATGGAACACAAACTGACGGCGGTG
ATCGATGCATTCGCTAAGCTGGTCGAATCTTTCTTTTATTTTCATGTATT
TTTCTTATTAGTTAACTCTGga Run BLAST on NCBI protein sequence of TCONS_00041016-protein >TCONS_00041016-protein ID=TCONS_00041016-protein|Name=TCONS_00041016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp
MLPCQNPVSTSNDNEELFYVTIQNTSGKTLCKWYPPPKTNDITPINLLIF
LREDLGVPFNFLILYLGDQSLTYKIGIQDNRWHDEEILVSNRPAVVKIAL
RNYCNGGDQIVIDKLAKKFDLMQARCVKIIEGRSKAILIENILDLSSING
QRHWLKCVQSLMYRNYGLISSKYTLKLVDDIVNLNKSGNSTSTKRPLKSF
ARLEDLFFSSNIEEFKEIVYLELSLVGGCLDEEKRKDFYFSILKVETLVL
KSLTRVEKLKMSDYKFFHILQDFIDRDWKIPKHLQVYMHHGQEIQNISMF
VDLFLDHGTSEERLNRCLILNLISKEPNFINIDLECPYDSSHTQRLGVPQ
TIRIKETATLMDVEKALLETTKIQFTVYPPVETYQELYKAQLQEKNIFFN
DQDFNLPKDEMYIYELERKCIGSFFLRVFRNVNVQIQRCDDCQSPEPFQK
TFAIALSDVSVKDVENKFCADFPNGFCCQETKLKFFVELDNSISLCSNVL
IVEDNQVLNFKAVKRSLSTRFKQFLGLKK Run BLAST on NCBI transcript from alignment at sc0002667:11000..13271 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041016 ID=TCONS_00041016|Name=TCONS_00041016|organism=Clytia hemisphaerica|type=transcript|length=2272bp|location=Sequence derived from alignment at sc0002667:11000..13271 (Clytia hemisphaerica)
tcCAGAGTTAACTAATAAGAAAAATACATGAAAATAAAAGAAAGATTCGA
CCAGCTTAGCGAATGCATCGATCACCGCCGTCAGTTTGTGTTCCATCCCT
TTGAAGAATAGAATAAGATGATGATAGAGATCCTCATTCAAATCCCTCGA
AGGATTACCTAGATTCTCATGAGGATTCTTGGAATAAAGGAGTTGTAATA
ATTTGCATTTCACGCCGGTAATGGTCGCAAGCACCCTTTGCAGAAGAATA
GAAGAAGAAAACAGTGATGCTTCCTTGTCAAAACCCTGTTTCAACATCCA
ATGACAACGAAGAATTATTTTATGTCACTATCCAAAACACGTCTGGTAAA
ACACTTTGTAAATGGTATCCACCACCCAAAACCAATGATATTACACCTAT
AAATCTTTTGATATTTCTAAGAGAAGATCTTGGTGTTCCTTTTAATTTTC
TAATCCTCTATCTTGGCGATCAAAGCTTAACCTATAAAATTGGTATCCAA
GATAATCGTTGGCATGATGAGGAGATTTTGGTGTCCAATAGACCAGCAGT
TGTCAAGATTGCATTGAGAAACTATTGTAACGGTGGTGATCAAATTGTTA
TTGACAAATTAGCTAAGAAATTTGACCTGATGCAAGCACGGTGTGTCAAG
ATTATTGAAGGCCGTTCTAAAGCTATTcttattgaaaatattcttgatcT
ATCATCCATTAATGGGCAAAGACACTGGTTAAAATGTGTTCAAAGTTTGA
TGTATCGTAACTATGGATTAATTTCGTCAAAATACACCTTGAAGTTAGTG
GATGATATTGTGAACTTGAATAAATCGGGTAACAGTACTTCTACAAAGCG
GCCATTGAAGTCTTTTGCCCGTCTTGAAGACTTGTTTTTTTCGTCAAACA
TAGAGGAATTTAAAGAAATTGTTTATTTAGAACTATCTCTTGTGGGTGGT
TGCCTTGATGAGGAAAAgagaaaagatttttatttctcAATATTAAAAGT
TGAAACGTTAGTTTTGAAATCTTTGACCAGAGTGGAGAAGTTGAAGATGT
CGGATTataaattttttcatattttgcaaGACTTCATTGATAGAGATTGG
AAGATCCCAAAGCACTTACAAGTTTATATGCATCATGGTCAAgaaatcca
aaatatttcaatgtttGTTGATCTATTTCTGGATCATGGTACTTCTGAAG
AGAGGCTCAACAGATGCTTAATTCTGAATCTGATATCAAAAGAACCGAAT
TTTATTAATATAGATCTTGAATGTCCTTATGACAGCTCACATACCCAAAG
GTTAGGTGTTCCACAAACTATTCGTATAAAGGAAACTGCAACTTTAATGG
ACGTTGAAAAAGCTTTATTAGAGACTACTAAAATACAATTTACCGTATAT
CCACCAGTTGAAACTTATCAAGAATTATATAAAGCACAGCTAcaagagaa
aaatatattttttaatgatcAGGACTTCAACTTACCAAAAGACGAAATGT
ATATTTACGAATTGGAACGGAAATGCATCGGATCTTTCTTTTTGCGGGTT
TTCAGAAATGTTAATGTTCAAATACAACGTTGCGACGATTGCCAGTCACC
CGAACCTTTTCAAAAGACATTTGCTATTGCCCTCTCAGATGTGTCAGTTA
AAGacgttgaaaataaattttgtgcGGATTTTCCGAATGGTTTTTGCTGT
CAAGAGACTAAACTTAAATTCTTTGTTGAACTCGACAATTCGATAAGTCT
ATGTTCGAATGTTCTAATTGTTGAAGACAATCAAGTGTTGAATTTCAAAG
CAGTAAAAAGATCGCTAAGTACCCGTTTCAAACAGTTTTTGGGCTTGAAG
AAATGAACTTTTTTCATTCATGTATCTGACGTCTAGCAGCAAAGACCGTG
TAAGAAGTGTATGAAATGAGTGGAGTAGAATTTATATAAATTAGCACGAA
ATAAAAGTGGTGGTCATGATTTAAGTTGTCTTTTATGATGATATATTGCc
taattttctttttagaaacTCATTTTAACGGGATAACTTttcacggggat
taaatttgtggttgagctcatccgcaaaatttttaagatttcactGGGAC
ttaatttgtttgtttgttgaaaaatgcATTAGTAGCGCTTCTTTAATGCT
AGTAGTAGACATTTAAAAAGAAGTTCATATGACAATttaaaatcactgaa
aattttttacctTATAAGTACGAATTAGGAatcgatttttttattgaata
aaTAATTTTATGTTGTCGGTGA Coding sequence (CDS) from alignment at sc0002667:11000..13271 >TCONS_00041016 ID=TCONS_00041016|Name=TCONS_00041016|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at sc0002667:11000..13271 (Clytia hemisphaerica)
ATGCTTCCTTGTCAAAACCCTGTTTCAACATCCAATGACAACGAAGAATT
ATTTTATGTCACTATCCAAAACACGTCTGGTAAAACACTTTGTAAATGGT
ATCCACCACCCAAAACCAATGATATTACACCTATAAATCTTTTGATATTT
CTAAGAGAAGATCTTGGTGTTCCTTTTAATTTTCTAATCCTCTATCTTGG
CGATCAAAGCTTAACCTATAAAATTGGTATCCAAGATAATCGTTGGCATG
ATGAGGAGATTTTGGTGTCCAATAGACCAGCAGTTGTCAAGATTGCATTG
AGAAACTATTGTAACGGTGGTGATCAAATTGTTATTGACAAATTAGCTAA
GAAATTTGACCTGATGCAAGCACGGTGTGTCAAGATTATTGAAGGCCGTT
CTAAAGCTATTcttattgaaaatattcttgatcTATCATCCATTAATGGG
CAAAGACACTGGTTAAAATGTGTTCAAAGTTTGATGTATCGTAACTATGG
ATTAATTTCGTCAAAATACACCTTGAAGTTAGTGGATGATATTGTGAACT
TGAATAAATCGGGTAACAGTACTTCTACAAAGCGGCCATTGAAGTCTTTT
GCCCGTCTTGAAGACTTGTTTTTTTCGTCAAACATAGAGGAATTTAAAGA
AATTGTTTATTTAGAACTATCTCTTGTGGGTGGTTGCCTTGATGAGGAAA
AgagaaaagatttttatttctcAATATTAAAAGTTGAAACGTTAGTTTTG
AAATCTTTGACCAGAGTGGAGAAGTTGAAGATGTCGGATTataaattttt
tcatattttgcaaGACTTCATTGATAGAGATTGGAAGATCCCAAAGCACT
TACAAGTTTATATGCATCATGGTCAAgaaatccaaaatatttcaatgttt
GTTGATCTATTTCTGGATCATGGTACTTCTGAAGAGAGGCTCAACAGATG
CTTAATTCTGAATCTGATATCAAAAGAACCGAATTTTATTAATATAGATC
TTGAATGTCCTTATGACAGCTCACATACCCAAAGGTTAGGTGTTCCACAA
ACTATTCGTATAAAGGAAACTGCAACTTTAATGGACGTTGAAAAAGCTTT
ATTAGAGACTACTAAAATACAATTTACCGTATATCCACCAGTTGAAACTT
ATCAAGAATTATATAAAGCACAGCTAcaagagaaaaatatattttttaat
gatcAGGACTTCAACTTACCAAAAGACGAAATGTATATTTACGAATTGGA
ACGGAAATGCATCGGATCTTTCTTTTTGCGGGTTTTCAGAAATGTTAATG
TTCAAATACAACGTTGCGACGATTGCCAGTCACCCGAACCTTTTCAAAAG
ACATTTGCTATTGCCCTCTCAGATGTGTCAGTTAAAGacgttgaaaataa
attttgtgcGGATTTTCCGAATGGTTTTTGCTGTCAAGAGACTAAACTTA
AATTCTTTGTTGAACTCGACAATTCGATAAGTCTATGTTCGAATGTTCTA
ATTGTTGAAGACAATCAAGTGTTGAATTTCAAAGCAGTAAAAAGATCGCT
AAGTACCCGTTTCAAACAGTTTTTGGGCTTGAAGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041016-exon-sc0002667-1491911889:11000..13271 | TCONS_00041016-exon-sc0002667-1491911889:11000..13271 | Clytia hemisphaerica | exon |
| TCONS_00041016-exon-sc0002667-1510915933:11000..13271 | TCONS_00041016-exon-sc0002667-1510915933:11000..13271 | Clytia hemisphaerica | exon |
| TCONS_00041016-exon-sc0002667-1575043694:11000..13271 | TCONS_00041016-exon-sc0002667-1575043694:11000..13271 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002667 | supercontig | sc0002667:11000..13271 . |
Blast
The following BLAST results are available for this feature:
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