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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040876 ID=TCONS_00040876|Name=TCONS_00040876|organism=Clytia hemisphaerica|type=transcript|length=2604bp
TCTCAATGCAAGGCACACGAAAAAAGCCCACAATGTTGTTCCAAAATAAA
AGCATAAACTCTCACCTTTTTCTCTGCTAATATTTCTTCTGCATTGTATA
TACATCTCTTCTTCTTCTGCATACTTTCTGTTGTGCCAGCACTTCATGTT
CACTGGCACTTGAAAAGTCATTCAAAGATTTGTAGTGAATGTACAGTACT
ACGTCTACGAGACATTTTATTCTTTCGATGTTTTCATCTTGCCAGCCAAA
AATCAAATGACCTCCCCGCGTGAAATttacaacttgaaattttgctgacg
caACAATATTCGCAGAATCATGCAATCACGCACGGGAAGAACTGTTGCAT
TGGCCAATCAGAAGCCCTTACGCAAACGAAGAAAAAGCCGGGGGAACACG
TCAATCACGGAAACGTGACAAGATTTGGAAACCCCATTTGTCGCGATGGT
TTGTTTCTGACCTTTTATTTTCGGTGATCTGATTGGTTGTGTTGCCGTTT
GGGATGGTCCTTTCTCTAACTTACTCTTTTTCACTTGTTTCCAATGGTCT
TTCTCTGATTTTCTTTGACCAGGTGTTGTGGATGCTGGTCTTTTTCTTGC
CCGAAGATTATAGTGATGTTGcttcggtgtttcggtgttaaTCGCATTGG
TTTCCAAAGTTTGTAGTACTGCTGGGTACCACAGGTGTTGGTATTGGTGC
TGCCACATTAACAATTTGGTTTCTGGTCTTTGATGAATCTCTCTTCAACT
TTGGTGATTGTACAGTATAATGCCACTTGTGACATCGCCAGTAGATTGAT
TTCTGGAATTTGTAACactagtttttgtttttttgcttgcTAAAGATTGT
GTTGATCTTTTGGGCGACTTATATGGTATGCATAATCTGTTTTCTTAGTT
TTCTCGCCTTTTTAGAATGTCCAGGAATGTCTTCTAATTTGTTTAGCAAA
CGGTCAGAGGTTAAAAGAATCACTCGACAGTGCTTCGATGACAAtcaatt
tttcagatttcatAATTATAACAATAATATATTTAGTTAAAAATTGGTTT
TTAATGGCAAATCTTCGtctaaattaatttttcatttgagtcATGTGCCG
TCTCATTCAACAAATCTTCATCGCTTGGGCAGACATGATGATTGAACAGC
TTGCATCTATATGCTCACCCTACCAGCAATAAGGAACCGGTACAAGAAGC
CTCCTTTGGTTCAATAAATTGTCTCTACCTTGGGTCCATGTATTTCTCTT
CTCTAAGCTGGTTAAGTGCTCTGTgcataagtaatagttatcctCTGATG
CCTCCAACGGATCTAAAATAAAGAATTCTGGTGTTACTGTCAAATATTAG
TTTTTAATGCCAAATTTTTGTCCAAATAAGATGTCATCAGTACGGCGTGG
GACTTCATTCAACAAGTCTTTATCGCTTGGGCAGACATGATTGAAGAGCC
TTCATCTATATGCTCACCAACAATAAGGTATAAGATAGTAAGAACTATTC
TTGGGTTCAACGAATCATCTTTACCTTGTTCGCAGGGTCGCTAGCCATAC
TAGAAATCTTGAATATGCTTGGAAAAGTGATAGTACTTTGACTATTCTAG
AAATTCTGAAACAAtccattaattttgaaaaagaactttcgGGAAATATA
AAGTAGAGATGTCAAAGTTTTGTATGTAGTAAAACTTCTGTATAACTTAT
TTTCCTCTGcggatttgagagaaatttcaaatttgccCGACGTTTTGTGG
CTACATGCTGTATATTTTAGTTTCTAATTTCATCTTTCACTCCTCGCAGT
GAGTCATATTTTCTCTCGTTaagatcaatttttttctctcgatTTATTTG
GATAACACACTTCACTATCCTCTTCCTTTGTGCTCTTGAAAACCAATCTG
AGAATCAATCTATCAATCTCCGAGAACATATGAAACAATAATCattttat
cataaattttaGTTTCGATTATTTCCAATCCAGCTATGTTTTCAAAGGCT
GTCTCAgcctatttcaaaattttctaatcCAACCATAGTTTTATTTTTCG
TTTATGGGTTGGAGGGTTAGTGTTCCTAATCCAATTTTTGAGCgagatta
tttttgaaataagcGCTTATTTTGGATCGACAAAAGAcaaatttcactgg
tttgaagaagacctgaaaaatttgaaatcacccAGCCAAAGCATTTGTGC
CAGCCGACGatgaaattttgtttcattttgtttaACCCTGGTAGAAAATC
TTGATAAGATCTTACCAAGATCTTTTAAAGAAACTTTACAAGAACTTTAT
AGGTTTCTTCTCAAGATCTGTGCAAAGAACCTTAAAGATCTTGACACGAT
CGTTTAGGATCTTTAAAGTTTCTTGAAGGTTTaagatctttttcaaaaaa
tcgttttcaaaaatatacgcACCCAAAAGATAAATCTGCTAAATTTTCTC
CTTTCAACGAATAAAGAATTCATAAGATTCTTAGACCTAAATATTAATTG
TtcctaaatttgataaaaaaaacctCGACTTTGACGATTACAAGATCTCA
AAACCGATACACATATGAAATCTTTTAACTTCGAATACATATATACAATA
tgta Run BLAST on NCBI protein sequence of TCONS_00040876-protein >TCONS_00040876-protein ID=TCONS_00040876-protein|Name=TCONS_00040876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MWQHQYQHLWYPAVLQTLETNAINTETPKQHHYNLRARKRPASTTPGQRK
SEKDHWKQVKKSKLEKGPSQTATQPIRSPKIKGQKQTIATNGVSKSCHVS
VIDVFPRLFLRLRKGF Run BLAST on NCBI transcript from alignment at sc0002611:3870..6473 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040876 ID=TCONS_00040876|Name=TCONS_00040876|organism=Clytia hemisphaerica|type=transcript|length=2604bp|location=Sequence derived from alignment at sc0002611:3870..6473 (Clytia hemisphaerica)
tacaTATTGTATATATGTATTCGAAGTTAAAAGATTTCATATGTGTATCG
GTTTTGAGATCTTGTAATCGTCAAAGTCGaggttttttttatcaaattta
ggaACAATTAATATTTAGGTCTAAGAATCTTATGAATTCTTTATTCGTTG
AAAGGAGAAAATTTAGCAGATTTATCTTTTGGGTgcgtatatttttgaaa
acgattttttgaaaaagatcttAAACCTTCAAGAAACTTTAAAGATCCTA
AACGATCGTGTCAAGATCTTTAAGGTTCTTTGCACAGATCTTGAGAAGAA
ACCTATAAAGTTCTTGTAAAGTTTCTTTAAAAGATCTTGGTAAGATCTTA
TCAAGATTTTCTACCAGGGTtaaacaaaatgaaacaaaatttcatCGTCG
GCTGGCACAAATGCTTTGGCTgggtgatttcaaatttttcaggtcttctt
caaaccagtgaaatttgTCTTTTGTCGATCCAAAATAAGCgcttatttca
aaaataatctcGCTCAAAAATTGGATTAGGAACACTAACCCTCCAACCCA
TAAACGAAAAATAAAACTATGGTTGgattagaaaattttgaaataggcTG
AGACAGCCTTTGAAAACATAGCTGGATTGGAAATAATCGAAACtaaaatt
tatgataaaatGATTATTGTTTCATATGTTCTCGGAGATTGATAGATTGA
TTCTCAGATTGGTTTTCAAGAGCACAAAGGAAGAGGATAGTGAAGTGTGT
TATCCAAATAAatcgagagaaaaaaattgatcttAACGAGAGAAAATATG
ACTCACTGCGAGGAGTGAAAGATGAAATTAGAAACTAAAATATACAGCAT
GTAGCCACAAAACGTCGggcaaatttgaaatttctctcaaatccgCAGAG
GAAAATAAGTTATACAGAAGTTTTACTACATACAAAACTTTGACATCTCT
ACTTTATATTTCCcgaaagttctttttcaaaattaatggaTTGTTTCAGA
ATTTCTAGAATAGTCAAAGTACTATCACTTTTCCAAGCATATTCAAGATT
TCTAGTATGGCTAGCGACCCTGCGAACAAGGTAAAGATGATTCGTTGAAC
CCAAGAATAGTTCTTACTATCTTATACCTTATTGTTGGTGAGCATATAGA
TGAAGGCTCTTCAATCATGTCTGCCCAAGCGATAAAGACTTGTTGAATGA
AGTCCCACGCCGTACTGATGACATCTTATTTGGACAAAAATTTGGCATTA
AAAACTAATATTTGACAGTAACACCAGAATTCTTTATTTTAGATCCGTTG
GAGGCATCAGaggataactattacttatgcACAGAGCACTTAACCAGCTT
AGAGAAGAGAAATACATGGACCCAAGGTAGAGACAATTTATTGAACCAAA
GGAGGCTTCTTGTACCGGTTCCTTATTGCTGGTAGGGTGAGCATATAGAT
GCAAGCTGTTCAATCATCATGTCTGCCCAAGCGATGAAGATTTGTTGAAT
GAGACGGCACATgactcaaatgaaaaattaatttagaCGAAGATTTGCCA
TTAAAAACCAATTTTTAACTAAATATATTATTGTTATAATTatgaaatct
gaaaaattgaTTGTCATCGAAGCACTGTCGAGTGATTCTTTTAACCTCTG
ACCGTTTGCTAAACAAATTAGAAGACATTCCTGGACATTCTAAAAAGGCG
AGAAAACTAAGAAAACAGATTATGCATACCATATAAGTCGCCCAAAAGAT
CAACACAATCTTTAgcaagcaaaaaaacaaaaactagtGTTACAAATTCC
AGAAATCAATCTACTGGCGATGTCACAAGTGGCATTATACTGTACAATCA
CCAAAGTTGAAGAGAGATTCATCAAAGACCAGAAACCAAATTGTTAATGT
GGCAGCACCAATACCAACACCTGTGGTACCCAGCAGTACTACAAACTTTG
GAAACCAATGCGAttaacaccgaaacaccgaagCAACATCACTATAATCT
TCGGGCAAGAAAAAGACCAGCATCCACAACACCTGGTCAAAGAAAATCAG
AGAAAGACCATTGGAAACAAGTGAAAAAGAGTAAGTTAGAGAAAGGACCA
TCCCAAACGGCAACACAACCAATCAGATCACCGAAAATAAAAGGTCAGAA
ACAAACCATCGCGACAAATGGGGTTTCCAAATCTTGTCACGTTTCCGTGA
TTGACGTGTTCCCCCGGCTTTTTCTTCGTTTGCGTAAGGGCTTCTGATTG
GCCAATGCAACAGTTCTTCCCGTGCGTGATTGCATGATTCTGCGAATATT
GTtgcgtcagcaaaatttcaagttgtaaATTTCACGCGGGGAGGTCATTT
GATTTTTGGCTGGCAAGATGAAAACATCGAAAGAATAAAATGTCTCGTAG
ACGTAGTACTGTACATTCACTACAAATCTTTGAATGACTTTTCAAGTGCC
AGTGAACATGAAGTGCTGGCACAACAGAAAGTATGCAGAAGAAGAAGAGA
TGTATATACAATGCAGAAGAAATATTAGCAGAGAAAAAGGTGAGAGTTTA
TGCTTTTATTTTGGAACAACATTGTGGGCTTTTTTCGTGTGCCTTGCATT
GAGA Coding sequence (CDS) from alignment at sc0002611:3870..6473 >TCONS_00040876 ID=TCONS_00040876|Name=TCONS_00040876|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0002611:3870..6473 (Clytia hemisphaerica)
ATGTGGCAGCACCAATACCAACACCTGTGGTACCCAGCAGTACTACAAAC
TTTGGAAACCAATGCGAttaacaccgaaacaccgaagCAACATCACTATA
ATCTTCGGGCAAGAAAAAGACCAGCATCCACAACACCTGGTCAAAGAAAA
TCAGAGAAAGACCATTGGAAACAAGTGAAAAAGAGTAAGTTAGAGAAAGG
ACCATCCCAAACGGCAACACAACCAATCAGATCACCGAAAATAAAAGGTC
AGAAACAAACCATCGCGACAAATGGGGTTTCCAAATCTTGTCACGTTTCC
GTGATTGACGTGTTCCCCCGGCTTTTTCTTCGTTTGCGTAAGGGCTTCTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040876-exon-sc0002611-1491911889:3870..6473 | TCONS_00040876-exon-sc0002611-1491911889:3870..6473 | Clytia hemisphaerica | exon |
| TCONS_00040876-exon-sc0002611-1510915933:3870..6473 | TCONS_00040876-exon-sc0002611-1510915933:3870..6473 | Clytia hemisphaerica | exon |
| TCONS_00040876-exon-sc0002611-1575043694:3870..6473 | TCONS_00040876-exon-sc0002611-1575043694:3870..6473 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002611 | supercontig | sc0002611:3870..6473 . |
Blast
The following BLAST results are available for this feature:
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