TCONS_00040663 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040663
Unique NameTCONS_00040663
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length621

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040663 ID=TCONS_00040663|Name=TCONS_00040663|organism=Clytia hemisphaerica|type=transcript|length=621bp
CCGATCGTTTGTGCAACCCGTTCAAACCGATCTAAACcggtttcaaaaaa
atctgaaatctcagTCAATGAGAACCGGTTGCTACCAGTTTGGAAGAGAA
GAACACCGGTTTTGCAATAGATTTCGGATTCAaaatcaataaagaaaaaa
aggcacatataaagaaataaaaagaaaaaactattgTAATATTGAAATAA
TCTCAAGGGTTGTGGAACTCATTCATGACAAATTTATTGTTACTGGAATT
TATATGGTAAACAGGACGAGGATTTGGATTTGACATTATTTGGTTTTGAG
GAAGTGTTGTTGATGATGTAGTTGTTGGACGGTTTAATTTTAATTGGTTT
GTTGGCTGACATTGTGTTGTGTTGTTGTTTTGTGCAGGAATTGAGCTCAA
AGGCTTCACCGTATGTTGGATTAAACGTTCCAACAGTTCAGCTCGTTCCT
ATAAATGTCTGCGTTCTTCCCTATATTGTTGCCGCTTATGGTGCCTTTCC
ATTTTAAGGGCCTCCCTGTATTGTTGTAGGGAGAAATTTGCGAAATTTCC
ACCAGTTGGATGGTTATTTGCAGCCAATTGGATGAAATTGTTGCCTCTAC
CTCTGCCTTTTCGTTTTAAAG
Run BLAST on NCBI

transcript from alignment at sc0002513:14268..16070-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040663 ID=TCONS_00040663|Name=TCONS_00040663|organism=Clytia hemisphaerica|type=transcript|length=1803bp|location=Sequence derived from alignment at sc0002513:14268..16070- (Clytia hemisphaerica)
CCGATCGTTTGTGCAACCCGTTCAAACCGATCTAAACCGGTTTCAAAAAA
ATCTGAAATCTCAGTCAATGAGAACCGGTTGCTACCAGTTTGGAAGAGAA
GAACACCGGTTTTGCAATAGATTTCGGATTCAAAATCAATAAAGAAAAAA
AGGCACATATAAAGAAATAAAAAGAAAAAACTATTGTAATATTGAAATAA
TCTCAAGGGTTGTGGAACTCATTCATGACAAATTTATTGTTACTGGAATT
TATATGGTAAACAGGACGAGGATTTGGATTTGACATTATTTGGTTTTGAG
GAAGTGTTGTTGATGATGTAGTTGTTGGACGGTTTAATTTTAATTGGTTT
GTTGGCTGACATTGTGTTGTGTTGATGTTTTGTGCAGGAATTGAGCTCAA
AGGCTTCACCGTATGTTGGATTAAACGTTCCAACAGTTCAGCTCGTTCCT
CTAAATGTCTGCGTTCTTCCCTGTATTGTTGCCGCTTATGGTGCTATTCC
ATTTTAAGGGCCTCCCTGTATTATTGTAGGGAGAAATTTGGGAAATTTCC
ACCAGTTGGATGGTTATTTGCAGCCAATTGGATGAAATTGTTGCCTCTAC
CTCTGCCTTTTCGTTTTAAAGATCTTGATTTTGTTCACCAGTTATTGGGC
ACATATGTTTTCGAGAGATCCCTCTATCCTGTCCTCATCCTGGTTGAGAT
CCCTTTAAATCAGAATCAAGATAATTCCGGATAGGAATGACACCCGATTT
AAACCGGTTATCGAAAAACCGATCTTTGCACCGGTGCCGATCGTTCGTGC
AACCCGTTCAAACCGATCTAAACCGGTTTCAAAAAAATCTGAAATCTCAG
TCAATGAGAACCTGTTGCTACCAGTTTGGAAGAGAAGAACACCGGTTTTG
CAATAGATTTCGGATTCAAAATCAAAAAAGAAAAAAAGGCACATATAAAG
AAATAAAAAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAAATAAAAAGAAAAAACTATTGTAATATTGAAATAATCTCAAGGGTGGT
GGAACTCATTCATGACAAATTTATTGTTACTGAAATTTATATGGTAAACA
AAAATCAAAAAAGAAAAAAAAGGCACATATAAANGTTGTTTTGTGCAGGA
ATTGAGCTCAAAGGCTTCACCGTATGTTGGATTAAACGTTCCAACAGTTC
AGCTCGTTCCTCTAAATGTCTGCGTTCCTCCCTGTATTGTTGCCGCTTAT
GGTGCCTTTCCATTTTAAGGGCCTCCCTGTATTGTTGTAGGGAGAAATTT
GGGAAATTTCCACCAGTTGGATGGTTATTTGCAGCCAATTGGATGAAATT
GGTTNCATGACAAATTTATTGTTACTGAAATTTATATGGTAAACAGGACG
AGGATTTGGATTTGACATTATTTGGTTTTGAGCAAGTGTTGTTGATGGTG
TAGTTGTTGGACGGTTTAATTTTAATTGGTTTGTTAGCTGACATTGTGTT
GTGTTGTTGTTTTGTGCAGGAATTGAGCTCAAAGGCTTCACCGTATGTTG
GATTAAACGTTCCAACAGTTCAGCTCGTTCCTATAAATGTCTGCGTTCTT
CCCTATATTGTTGCCGCTTATGGTGCCTTTCCATTTTAAGGGCCTCCCTG
TATTGTTGTAGGGAGAAATTTGCGAAATTTCCACCAGTTGGATGGTTATT
TGCAGCCAATTGGATGAAATTGTTGCCTCTACCTCTGCCTTTTCGTTTTA
AAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024772XLOC_024772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040663-exon-sc0002513-1575043694:15711..16070TCONS_00040663-exon-sc0002513-1575043694:15711..16070Clytia hemisphaericaexon
TCONS_00040663-exon-sc0002513-1575043694:14268..14528TCONS_00040663-exon-sc0002513-1575043694:14268..14528Clytia hemisphaericaexon
TCONS_00040663-exon-sc0002513-1510915933:15711..16070TCONS_00040663-exon-sc0002513-1510915933:15711..16070Clytia hemisphaericaexon
TCONS_00040663-exon-sc0002513-1510915933:14268..14528TCONS_00040663-exon-sc0002513-1510915933:14268..14528Clytia hemisphaericaexon
TCONS_00040663-exon-sc0002513-1491911889:15711..16070TCONS_00040663-exon-sc0002513-1491911889:15711..16070Clytia hemisphaericaexon
TCONS_00040663-exon-sc0002513-1491911889:14268..14528TCONS_00040663-exon-sc0002513-1491911889:14268..14528Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002513supercontigsc0002513:14268..16070 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.0898824	0	0	0	0	0.276024	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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