TCONS_00040642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040642
Unique NameTCONS_00040642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length227

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040642 ID=TCONS_00040642|Name=TCONS_00040642|organism=Clytia hemisphaerica|type=transcript|length=227bp
ggccgattttcagaccgcgccaACAAAACTCCTCACGCCCGCCACGCGGA
AGGCTAGAATTCACCCGCCATCTTTAATGTTTTTCGGTGCTGTCCAAAGG
TCATTTCTTGGTTGCGCGTGGTAGGGAGACGATTCCttgaaaaggtggtt
tttttgtggtttgaaaatggaataactttggaactacttaaccaatttta
acaaatcacccctcatttttctcacaa
Run BLAST on NCBI

transcript from alignment at sc0002506:9277..9503

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040642 ID=TCONS_00040642|Name=TCONS_00040642|organism=Clytia hemisphaerica|type=transcript|length=227bp|location=Sequence derived from alignment at sc0002506:9277..9503 (Clytia hemisphaerica)
ttgtgagaaaaatgaggggtgatttgttaaaattggttaagtagttccaa
agttattccattttcaaaccacaaaaaaaccaccttttcaaGGAATCGTC
TCCCTACCACGCGCAACCAAGAAATGACCTTTGGACAGCACCGAAAAACA
TTAAAGATGGCGGGTGAATTCTAGCCTTCCGCGTGGCGGGCGTGAGGAGT
TTTGTtggcgcggtctgaaaatcggcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024751XLOC_024751Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040642-exon-sc0002506-1491911889:9277..9503TCONS_00040642-exon-sc0002506-1491911889:9277..9503Clytia hemisphaericaexon
TCONS_00040642-exon-sc0002506-1510915933:9277..9503TCONS_00040642-exon-sc0002506-1510915933:9277..9503Clytia hemisphaericaexon
TCONS_00040642-exon-sc0002506-1575043694:9277..9503TCONS_00040642-exon-sc0002506-1575043694:9277..9503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002506supercontigsc0002506:9277..9503 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.32407	5.40248	8.78192	7.36434	16.4365	17.7114	4.27361	4.0009	2.80113	6.18518	2.24515	4.42762	2.21073	6.8876	3.33751	4.23754	5.51384	8.02081	9.42282	6.66105	3.2139	4.70288	0	2.31002	4.75854	4.24688	1.51932	3.24292	0	3.75897
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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