TCONS_00040533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040533
Unique NameTCONS_00040533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040533 ID=TCONS_00040533|Name=TCONS_00040533|organism=Clytia hemisphaerica|type=transcript|length=717bp
CCATAATGCTTCAAAGACTCGACTCGGTTGGACTCTGCTTGGAGTGTACG
ATGGTACTTCAGATCCGATTGAAAGTCGAATTGTTGCACTGACCAGAAAT
ttggaactcgcatcagccaacaccagggtattctctggcgtcaatcagta
acgtaaataaagcctgggatacacggggacgaagTTGGAAAAAACTCCAA
TGGTATTTTcgttcatttttttcttaactAACGTTTACCTTTGCTCGATC
GCCGTTCCGCCCTACGTTAATCTGTGAAACTGTCCTACTTTGAATCATAA
GTTTAATTACTTTTTCTTAGGTATATTTCTCTTTCACTCTCATCATTCAG
GGAGAACAAAACTAACCAACCGATCCGTCCCAAACCAAAACCGCTAAACT
TAGAAGTAGAGCCACCGAGAACGCGGACAGTCAAACCACCGGCACGTGAA
CACAGGAGGCCATCCCGACCGCAACCGAAACCACAACCCTCAGCCAACAG
ACCATCGGAGAATAAAAGCTCTTCAACTTGTGAGCTGTTGTAGTCTGCTC
GCGTGCAATCTATCGACAATTGTTATTTGTTTGTAATCGAAACATAGCTA
AAACAACATAAGGCGTCTACGCTTCTACCCTCTACTGTCGATATGGCAAA
AAACACACGCATCCCACCTTCGAATCTTCTTTGATGGGTCCTAACGCGAC
CCCTTCAATTTAGAAAG
Run BLAST on NCBI

transcript from alignment at sc0002455:20791..21507

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040533 ID=TCONS_00040533|Name=TCONS_00040533|organism=Clytia hemisphaerica|type=transcript|length=717bp|location=Sequence derived from alignment at sc0002455:20791..21507 (Clytia hemisphaerica)
CTTTCTAAATTGAAGGGGTCGCGTTAGGACCCATCAAAGAAGATTCGAAG
GTGGGATGCGTGTGTTTTTTGCCATATCGACAGTAGAGGGTAGAAGCGTA
GACGCCTTATGTTGTTTTAGCTATGTTTCGATTACAAACAAATAACAATT
GTCGATAGATTGCACGCGAGCAGACTACAACAGCTCACAAGTTGAAGAGC
TTTTATTCTCCGATGGTCTGTTGGCTGAGGGTTGTGGTTTCGGTTGCGGT
CGGGATGGCCTCCTGTGTTCACGTGCCGGTGGTTTGACTGTCCGCGTTCT
CGGTGGCTCTACTTCTAAGTTTAGCGGTTTTGGTTTGGGACGGATCGGTT
GGTTAGTTTTGTTCTCCCTGAATGATGAGAGTGAAAGAGAAATATACCTA
AGAAAAAGTAATTAAACTTATGATTCAAAGTAGGACAGTTTCACAGATTA
ACGTAGGGCGGAACGGCGATCGAGCAAAGGTAAACGTTagttaagaaaaa
aatgaacgAAAATACCATTGGAGTTTTTTCCAActtcgtccccgtgtatc
ccaggctttatttacgttactgattgacgccagagaataccctggtgttg
gctgatgcgagttccaaATTTCTGGTCAGTGCAACAATTCGACTTTCAAT
CGGATCTGAAGTACCATCGTACACTCCAAGCAGAGTCCAACCGAGTCGAG
TCTTTGAAGCATTATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024660XLOC_024660Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040533-exon-sc0002455-1491911889:20791..21507TCONS_00040533-exon-sc0002455-1491911889:20791..21507Clytia hemisphaericaexon
TCONS_00040533-exon-sc0002455-1510915933:20791..21507TCONS_00040533-exon-sc0002455-1510915933:20791..21507Clytia hemisphaericaexon
TCONS_00040533-exon-sc0002455-1575043694:20791..21507TCONS_00040533-exon-sc0002455-1575043694:20791..21507Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002455supercontigsc0002455:20791..21507 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.110429	0.0923287	0	0.151134	1.23541	1.12144	0.592634	0.913524	0.224635	0	0	0.374218	0.301395	0.285493	0.143747	0.318461	0.392302	0	0.103974	0.22554	0	0.360901	0.114272	0.0900884	0	0.239147	0.114558	0.157618	0.23447	0.247502
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top