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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96367_cuf1 >transcript:BL96367_cuf1-protein ID=transcript:BL96367_cuf1-protein|Name=transcript:BL96367_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=332bp
DCQRGDGPSYRGTVSVTATGNTCQRWDSQTPQAHYGFNTPEANPSSGLEQ
NYCRNPDGESGVWCYDADNSTRWEYCDVPVCDLDSGCYNLASWTGAATGT
ISSMYYGTNSNYEDNASCKWEITVTSGKYVTLTFHRTFRVDPFCLGGDKV
TVYSGVTNGLTELGSFCGTTTPSTVQSCSNKMTVEFTTDSANAYRGFLAS
FSESDTACAVVTTSMTSTAGRTSAAATTTSSATTHPVTTPVRTVPTTTPT
PLSTPRTTTSTTTAPPPSTARTTPSTTTTAPPPSTARTTPTTTQRTTKST
TTTTTPSSTSRASTSTASNVSPTHPATTATTT Run BLAST on NCBI mRNA from alignment at Sc0000049:579318..581972+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96367_cuf1 ID=transcript:BL96367_cuf1|Name=transcript:BL96367_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2655bp|location=Sequence derived from alignment at Sc0000049:579318..581972+ (Branchiostoma lanceolatum)
AGATTGTCAGAGAGGGGATGGACCAAGCTACCGAGGAACGGTCTCTGTGA
CAGCAACGGGCAACACGTGTCAACGCTGGGACAGTCAGACACCTCAAGCA
CACTATGGCTTCAACACACCTGAAGCTAACCCATCATCCGGACTGGAGCA
GAACTACTGCCGGAATCCGGACGGCGAATCCGGAGTTTGGTGCTACGACG
CGGATAACAGCACCAGATGGGAGTACTGTGACGTACCAGTCTGCGGTAAG
GTCTGATTCTGTAACCTTTGATTTCATTTGATTTCATTATACAGTATTTG
CAACGGTACAATACACGTGGTCGTGACCCACACATAAAACAGCACAAAAC
ACGTAGCGAAACAAATATTTCACGGACTACAAGAAACAAAGCGATACATA
CAATCTAGAAATAACAGCATGATCAGATAGGACCTAACTATACCTTAGAT
AAGAGCTGATGTTTGTAACGTCTGTGTTTTAAAGATATCCATTATCTCCA
ATACCTTCTTACACTAAGCTCACTCAACTAGATGGTACGCCGCACGCTAC
TCAGTAACTAAAGAATACTAAAGTGGGGAACCTCATGTCTAATCCAATTT
GATGTGTATAAAATAGTCATTACATGATATGATGATCTAGATGTATGCAA
ATGATACAATCTGATACTTTAACAATGTTGATTGGTGGCAAATGACAGTT
GATATTTGAAGGGAGGCTATGGTTTTCTGTGAGTGTCTGTGTACTACTCC
TATACACATTGTACTGGTTTTTACTTAGTTTTGTTGTGGCCCGTGTATGT
CCATCTTCTGAATATCTATTTGAATTTGCAATTTTCTTTTGAAAACCAAT
AAAGAGAAAAACAATGCAGCAAGTTATGCAATAAACAATCTTTTTTGTCC
TTTTCCTGCCGCTATCTTTTTTATGAAATTGTGTTAAGACCTGGACTCGG
GGTGTTACAACCTTGCGAGCTGGACCGGTGCTGCAACTGGGACCATCTCG
TCCATGTACTACGGTACCAATAGTAACTACGAGGACAACGCTTCCTGCAA
GTGGGAGATCACGGTCACATCCGGGAAGTACGTGACCTTGACCTTTCACC
GGACATTCAGGGTCGACCCGTTCTGCCTAGGAGGAGACAAAGTGACGGTC
TACTCTGGTGTTACCAATGGGCTGACAGAGCTTGGTACGTTTTCATTCTA
TTATCTACACGCGTACTTTACTTCGCCTCTTGTTTATTATGAACTGATGC
TGTAAATATCTATCGACATTTCCGAGAGGACGGCCTAAGGTCACTCTCAG
GCGAACACTGCAAAACGACGGGAAGAAGCTGGGATTACATTCATTGGAGG
AAATGGCAGCAGCGGCACAAGACCGCAACCTTTGGAGAAGAAGTATACGA
AGCCAAGTTGACCTATGCAACAAAGTTGCGGGAGGATCTAAGGTCTAAGG
GTCTAAGGTAAGGTAAGATGCTGTAAATGCATTCAAGTTCAAGGTGGTTT
AGTGTTCACCGTTTTCAAGTTCACTCGAAAATGCTTGATCTGTCTTCTGC
CCACCTGCCACATTGTTTCAACGGTGAACAACGAAAAACCACCGCGAACA
CTCCACATTCATAGATTTGTCGATAGATATTAACCATAGATCCAAAGATA
TATTATAAGATTTTTTTGCATTTTTTCCAGGATCATTCTGTGGTACCACA
ACTCCTTCCACGGTTCAGTCATGCTCCAATAAGATGACTGTAGAGTTCAC
AACGGACTCCGCTAACGCTTACCGTGGGTTTCTCGCATCATTTTCAGAAT
CAGGTACGTGTTTACCACTGTCTGTAGACGTACGTCAAGTCCCTGTCACA
CACAGCATGCCCCCCAACTTTCTCCAGACCATGGTTGGGAGTTAGTGGTG
AGCAAGGTCAACTGTGGTTGGGAGTTGGTTGGCGAGGTTGCGTACTAGTC
TTTAAAAGTCGTATGCGCCATTCGACTATAGATACAAATCAAAGTCAGGA
AAGTCAAATCTGCTTGGATGCATGCGATCAGATGAGTGAATCAGAGCTAA
AGTAAGATGGATTAAAGGCTACATCCAACCCATCACCGACCTTGGTTTGG
GGGTGGTCGTGGGCAAAGTCGTGAGAAGGCCCTGAATGTGTGAAAGGCAC
TTAGGAAGACATATCCATAGAAGACCGTCTTTCAAAAGGCCATACATTGA
ACTACATGTTGTTTTTAAGTTACGTATTTGTATTAGTTTGTAAACCATAG
AATTTGACTTGACTGTACAGACACGGCTTGTGCTGTCGTGACTACGTCGA
TGACCTCAACTGCTGGAAGAACGTCAGCTGCCGCTACGACGACATCTTCA
GCTACAACACACCCAGTCACTACACCTGTACGAACGGTGCCAACAACAAC
TCCAACGCCGTTATCTACGCCACGGACAACGACATCAACAACAACTGCGC
CACCGCCATCTACGGCACGTACAACGCCATCAACAACAACAACTGCGCCA
CCGCCATCTACGGCACGTACGACACCAACAACAACACAACGTACAACGAA
GTCAACAACAACAACTACAACGCCGTCATCTACGTCACGTGCATCGACCT
CTACAGCTTCCAATGTGTCACCTACACACCCAGCTACAACAGCAACAACA
ACAAC Coding sequence (CDS) from alignment at Sc0000049:579318..581972+ >transcript:BL96367_cuf1 ID=transcript:BL96367_cuf1|Name=transcript:BL96367_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3984bp|location=Sequence derived from alignment at Sc0000049:579318..581972+ (Branchiostoma lanceolatum)
GATTGTCAGAGAGGGGATGGACCAAGCTACCGAGGAACGGTCTCTGTGAC
AGCAACGGGCAACACGTGTCAACGCTGGGACAGTCAGACACCTCAAGCAC
ACTATGGCTTCAACACACCTGAAGCTAACCCATCATCCGGACTGGAGCAG
AACTACTGCCGGAATCCGGACGGCGAATCCGGAGTTTGGTGCTACGACGC
GGATAACAGCACCAGATGGGAGTACTGTGACGTACCAGTCTGCGACCTGG
ACTCGGGGTGTTACAACCTTGCGAGCTGGACCGGTGCTGCAACTGGGACC
ATCTCGTCCATGTACTACGGTACCAATAGTAACTACGAGGACAACGCTTC
CTGCAAGTGGGAGATCACGGTCACATCCGGGAAGTACGTGACCTTGACCT
TTCACCGGACATTCAGGGTCGACCCGTTCTGCCTAGGAGGAGACAAAGTG
ACGGTCTACTCTGGTGTTACCAATGGGCTGACAGAGCTTGGATCATTCTG
TGGTACCACAACTCCTTCCACGGTTCAGTCATGCTCCAATAAGATGACTG
TAGAGTTCACAACGGACTCCGCTAACGCTTACCGTGGGTTTCTCGCATCA
TTTTCAGAATCAGACACGGCTTGTGCTGTCGTGACTACGTCGATGACCTC
AACTGCTGGAAGAACGTCAGCTGCCGCTACGACGACATCTTCAGCTACAA
CACACCCAGTCACTACACCTGTACGAACGGTGCCAACAACAACTCCAACG
CCGTTATCTACGCCACGGACAACGACATCAACAACAACTGCGCCACCGCC
ATCTACGGCACGTACAACGCCATCAACAACAACAACTGCGCCACCGCCAT
CTACGGCACGTACGACACCAACAACAACACAACGTACAACGAAGTCAACA
ACAACAACTACAACGCCGTCATCTACGTCACGTGCATCGACCTCTACAGC
TTCCAATGTGTCACCTACACACCCAGCTACAACAGCAACAACAACAGATT
GTCAGAGAGGGGATGGACCAAGCTACCGAGGAACGGTCTCTGTGACAGCA
ACGGGCAACACGTGTCAACGCTGGGACAGTCAGACACCTCAAGCACACTA
TGGCTTCAACACACCTGAAGCTAACCCATCATCCGGACTGGAGCAGAACT
ACTGCCGGAATCCGGACGGCGAATCCGGAGTTTGGTGCTACGACGCGGAT
AACAGCACCAGATGGGAGTACTGTGACGTACCAGTCTGCGACCTGGACTC
GGGGTGTTACAACCTTGCGAGCTGGACCGGTGCTGCAACTGGGACCATCT
CGTCCATGTACTACGGTACCAATAGTAACTACGAGGACAACGCTTCCTGC
AAGTGGGAGATCACGGTCACATCCGGGAAGTACGTGACCTTGACCTTTCA
CCGGACATTCAGGGTCGACCCGTTCTGCCTAGGAGGAGACAAAGTGACGG
TCTACTCTGGTGTTACCAATGGGCTGACAGAGCTTGGATCATTCTGTGGT
ACCACAACTCCTTCCACGGTTCAGTCATGCTCCAATAAGATGACTGTAGA
GTTCACAACGGACTCCGCTAACGCTTACCGTGGGTTTCTCGCATCATTTT
CAGAATCAGACACGGCTTGTGCTGTCGTGACTACGTCGATGACCTCAACT
GCTGGAAGAACGTCAGCTGCCGCTACGACGACATCTTCAGCTACAACACA
CCCAGTCACTACACCTGTACGAACGGTGCCAACAACAACTCCAACGCCGT
TATCTACGCCACGGACAACGACATCAACAACAACTGCGCCACCGCCATCT
ACGGCACGTACAACGCCATCAACAACAACAACTGCGCCACCGCCATCTAC
GGCACGTACGACACCAACAACAACACAACGTACAACGAAGTCAACAACAA
CAACTACAACGCCGTCATCTACGTCACGTGCATCGACCTCTACAGCTTCC
AATGTGTCACCTACACACCCAGCTACAACAGCAACAACAACAGATTGTCA
GAGAGGGGATGGACCAAGCTACCGAGGAACGGTCTCTGTGACAGCAACGG
GCAACACGTGTCAACGCTGGGACAGTCAGACACCTCAAGCACACTATGGC
TTCAACACACCTGAAGCTAACCCATCATCCGGACTGGAGCAGAACTACTG
CCGGAATCCGGACGGCGAATCCGGAGTTTGGTGCTACGACGCGGATAACA
GCACCAGATGGGAGTACTGTGACGTACCAGTCTGCGACCTGGACTCGGGG
TGTTACAACCTTGCGAGCTGGACCGGTGCTGCAACTGGGACCATCTCGTC
CATGTACTACGGTACCAATAGTAACTACGAGGACAACGCTTCCTGCAAGT
GGGAGATCACGGTCACATCCGGGAAGTACGTGACCTTGACCTTTCACCGG
ACATTCAGGGTCGACCCGTTCTGCCTAGGAGGAGACAAAGTGACGGTCTA
CTCTGGTGTTACCAATGGGCTGACAGAGCTTGGATCATTCTGTGGTACCA
CAACTCCTTCCACGGTTCAGTCATGCTCCAATAAGATGACTGTAGAGTTC
ACAACGGACTCCGCTAACGCTTACCGTGGGTTTCTCGCATCATTTTCAGA
ATCAGACACGGCTTGTGCTGTCGTGACTACGTCGATGACCTCAACTGCTG
GAAGAACGTCAGCTGCCGCTACGACGACATCTTCAGCTACAACACACCCA
GTCACTACACCTGTACGAACGGTGCCAACAACAACTCCAACGCCGTTATC
TACGCCACGGACAACGACATCAACAACAACTGCGCCACCGCCATCTACGG
CACGTACAACGCCATCAACAACAACAACTGCGCCACCGCCATCTACGGCA
CGTACGACACCAACAACAACACAACGTACAACGAAGTCAACAACAACAAC
TACAACGCCGTCATCTACGTCACGTGCATCGACCTCTACAGCTTCCAATG
TGTCACCTACACACCCAGCTACAACAGCAACAACAACAGATTGTCAGAGA
GGGGATGGACCAAGCTACCGAGGAACGGTCTCTGTGACAGCAACGGGCAA
CACGTGTCAACGCTGGGACAGTCAGACACCTCAAGCACACTATGGCTTCA
ACACACCTGAAGCTAACCCATCATCCGGACTGGAGCAGAACTACTGCCGG
AATCCGGACGGCGAATCCGGAGTTTGGTGCTACGACGCGGATAACAGCAC
CAGATGGGAGTACTGTGACGTACCAGTCTGCGACCTGGACTCGGGGTGTT
ACAACCTTGCGAGCTGGACCGGTGCTGCAACTGGGACCATCTCGTCCATG
TACTACGGTACCAATAGTAACTACGAGGACAACGCTTCCTGCAAGTGGGA
GATCACGGTCACATCCGGGAAGTACGTGACCTTGACCTTTCACCGGACAT
TCAGGGTCGACCCGTTCTGCCTAGGAGGAGACAAAGTGACGGTCTACTCT
GGTGTTACCAATGGGCTGACAGAGCTTGGATCATTCTGTGGTACCACAAC
TCCTTCCACGGTTCAGTCATGCTCCAATAAGATGACTGTAGAGTTCACAA
CGGACTCCGCTAACGCTTACCGTGGGTTTCTCGCATCATTTTCAGAATCA
GACACGGCTTGTGCTGTCGTGACTACGTCGATGACCTCAACTGCTGGAAG
AACGTCAGCTGCCGCTACGACGACATCTTCAGCTACAACACACCCAGTCA
CTACACCTGTACGAACGGTGCCAACAACAACTCCAACGCCGTTATCTACG
CCACGGACAACGACATCAACAACAACTGCGCCACCGCCATCTACGGCACG
TACAACGCCATCAACAACAACAACTGCGCCACCGCCATCTACGGCACGTA
CGACACCAACAACAACACAACGTACAACGAAGTCAACAACAACAACTACA
ACGCCGTCATCTACGTCACGTGCATCGACCTCTACAGCTTCCAATGTGTC
ACCTACACACCCAGCTACAACAGCAACAACAACA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000049 | genome | Sc0000049:579318..581972 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96367_cuf1 |
| Biotype | protein_coding |
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