TCONS_00040494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040494
Unique NameTCONS_00040494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040494 ID=TCONS_00040494|Name=TCONS_00040494|organism=Clytia hemisphaerica|type=transcript|length=386bp
GAACCAAAGGGGTTGAACAGAGACATGGCATATCAGTGATCATATCAGTT
CTTCGAAAAATAGTGCACACGTAAAATAGGAATAGACTacgaaaataaaa
ggaaaacacTGTGACAAGACTAACATAAATGACAATAAAAAACACAAACA
TATAACAATGAATATACctaatcaaataaatttcatgaCAATGAACGTAT
AAAGCAAAACATATGTAATAAACAAATACAGGAAGTAGCATAAAGCCAAA
CTAGAATATAATATGCCTAATATGAACATTGGATAAATATGTGTTATAAG
CAAATCGTATAAAGCTTTCCCCCATGTAGTTGATGGGGAGGGCTGGCGGA
GCAAATTATAAAACAGCAGTACAGCAAAATGAAGAA
Run BLAST on NCBI

transcript from alignment at sc0002441:7413..7798

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040494 ID=TCONS_00040494|Name=TCONS_00040494|organism=Clytia hemisphaerica|type=transcript|length=386bp|location=Sequence derived from alignment at sc0002441:7413..7798 (Clytia hemisphaerica)
TTCTTCATTTTGCTGTACTGCTGTTTTATAATTTGCTCCGCCAGCCCTCC
CCATCAACTACATGGGGGAAAGCTTTATACGATTTGCTTATAACACATAT
TTATCCAATGTTCATATTAGGCATATTATATTCTAGTTTGGCTTTATGCT
ACTTCCTGTATTTGTTTATTACATATGTTTTGCTTTATACGTTCATTGtc
atgaaatttatttgattagGTATATTCATTGTTATATGTTTGTGTTTTTT
ATTGTCATTTATGTTAGTCTTGTCACAgtgttttccttttattttcgtAG
TCTATTCCTATTTTACGTGTGCACTATTTTTCGAAGAACTGATATGATCA
CTGATATGCCATGTCTCTGTTCAACCCCTTTGGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024625XLOC_024625Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040494-exon-sc0002441-1491911889:7413..7798TCONS_00040494-exon-sc0002441-1491911889:7413..7798Clytia hemisphaericaexon
TCONS_00040494-exon-sc0002441-1510915933:7413..7798TCONS_00040494-exon-sc0002441-1510915933:7413..7798Clytia hemisphaericaexon
TCONS_00040494-exon-sc0002441-1575043694:7413..7798TCONS_00040494-exon-sc0002441-1575043694:7413..7798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002441supercontigsc0002441:7413..7798 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.300036	0	0	0	1.6556	0.91595	0.887262	0.347968	1.41309	1.34484	0	1.46436	0.966051	0.444951	0.914617	0.345591	0.500259	0.793124	1.20295	0.904873	0.894804	0.708466	0	0.507199	1.25647	0.431904	0.444198	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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