TCONS_00040361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040361
Unique NameTCONS_00040361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1920

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040361 ID=TCONS_00040361|Name=TCONS_00040361|organism=Clytia hemisphaerica|type=transcript|length=1920bp
NAACGTCAATTCATGAATACATGGGGTCCTGTTCTTCATGGTAACGATAT
AATGCCGATAATACATTTCCTGCAAGGTCAAGGAGTGATTGCTGTCAATA
AAGTTTGCCGATTTTGTAACCAACCAATGGCAATATCTGCTTATCGTGAT
GTTCTTGATGGTCACAAATGGTAAGAATTTATGCAAGGTTGAGTTTTATT
TTTCCACTTGTGGTATTTTAAAGATTTGATAGGAAGGATGGATATTAGGC
TTTGGCGGGGTAAAAGGTTGCTATATGATTTGGCAGATGCACTGGTTTTG
ACccacaaaaattttcagctttattcttaaccaaaagtattttgaaaatt
tgttcttagaaaaagaaagttaaaagGTTTCACTGTAAATTGTTGGATTT
AATTCATGTCTAGGAGATGCCCTCGACCTTGTCAAAGAACTCTTAGTTTG
CGCAATGGatcattttttgcacagtggCCGAAGATACGGTTGGGAAGATT
GTTTATGGTAATTTATTATTGGTCCAACAAAATAGGTGTTACAAAAATCG
AGACGATGACTGATTTGCCTTTAAAAACTGTTATTGCTGTATGTCAGTCA
CTACGCACAGTTTGTGGTAATCATCTACAGCGGAATCCAATTGTTGTTGG
AGGGGGTGGTTTCGTTGTACAGATTGATGAAACAATGATGCACCACAGAC
AAAGAAATGGTGTAGGAAGAGCAGCCCAACAGCCAGTTTGGGTATTTGGA
ATGGTGGACACCCAATTTACTCCTGCCCGCGGGTACATGGAAATAGTACA
AAGGAGAGACCGTGCAACATTGACCGGTGTGATCAATAGAAATTTGGCAG
CAAACAGCACCATTCATTCGGACTCCTGGGCTGCATACAATAACCTGCCA
CTGCATGTCCCAAACTGTATCCAGCATGATCGTGTGAACCATAGGTATCA
TTTTGTGGACCCAAATACTGGAGCACACACACAGAACATCGAATCCTACT
GGAACAGGTTTAAGCATGGAATTAAATCAATGAAAGGGGTTAGAAGAGTG
GATCTGACCAGTTATTTAAAGGAATTTATATGGCGTGATTGGTATGGTTT
GGATGCCCCTTTGGACAATATCATCCAAGCTATCAACATCGACTATCCAC
TATAGAAGATGATTCATTTCCTTGGCTGCTGACAAACTTAACCGatcttt
tgttactttttatttattagtttttgtcACATTATCGTACACATGTAAAT
AGCTAAACCTATATACAATTCAAGTTTCAGAAGTTtgtactttcttttta
ttattgtaATCAGAAAGACATTGTTGCGTTTCATAAATATTTGGTTCTTT
GGCTTATGTTGCCTGTCCAGATGCCGAAAATGAAGAGGGAAAAATTATTT
GTTAGAGTCACGAGAAAAGCATATCTTCCCGcgggttttttttttcctaT
CCATCTTCCAATACCATGATGCATTACCCAAAACTGAAATACGATATCGT
TTAATAGACATTCAACACCAGTATAAAAACGACTATttttaaacatcaaa
ttttcGAACTCTTTTGGCCTTTCCACGAAGCATTATTATATAAGTATACG
GACATTAAAACCTACTCAATTCTAAGCCACTGCGTGTTGGCCCAAATTAC
TTAGAGATTGAAATTACAAACAATCAGTCTCCTTAAATCAGGCTCAGAAA
GCTTCAAGAGTTTTGGCATacgcctagatatgcttatactTTGGGTATTA
GTGGACCAGtgattttgggtaaatagtggaccagtcgagGATTTGGGGTA
AAAAGTGAACCagtgagatattttgggtaaatagtggaccagtgagacat
tttgggtaaatagtggaccagtgacatattttgggtaaatagtggaccag
tgacatattttgggtaaata
Run BLAST on NCBI

transcript from alignment at sc0002399:2435..5031-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040361 ID=TCONS_00040361|Name=TCONS_00040361|organism=Clytia hemisphaerica|type=transcript|length=2597bp|location=Sequence derived from alignment at sc0002399:2435..5031- (Clytia hemisphaerica)
NAACGTCAATTCATGAATACATGGGGTCCTGTTCTTCATGGTAACGATAT
AATGCCGATAATACATTTCCTGCAAGGTCAAGGAGTGATTGCTGTCAATA
AAGTTTGCCGATTTTGTAACCAACCAATGGCAATATCTGCTTATCGTGAT
GTTCTTGATGGTCACAAATGGTAAGAATTTATGCAAGGTTGAGTTTTATT
TTTCCACTTGTGGTATTTTAAAGATTTGATAGGAAGGATGGATATTAGGC
TTTGGCGGGGTAAAAGGTTGCTATATGATTTGGCAGATGCACTGGTTTTG
ACCCACAAAAATTTTCAGCTTTATTCTTAACCAAAAGTATTTTGAAAATT
TGTTCTTAGAAAAAGAAAGTTAAAAGGTTTCACTGTAAATTGTTGGATTT
AATTCATGTCTAGGAGATGCCCTCGACCTTGTCAAAGAACTCTTAGTTTG
CGCAATGGATCATTTTTTGCACAGTGGCCGAAGATACGGTTGGGAAGATT
GTTTATGGTAATTTATTATTGGTCCAACAAAATAGGTGTTACAAAAATCG
AGACGATGACTGATTTGCCTTTAAAAACTGTTATTGCTGTATGTCAGTCA
CTACGCACAGTTTGTGGTAATCATCTACAGCGGAATCCAATTGTTGTTGG
AGGGGGTGGTTTCGTTGTACAGATTGATGAAACAATGATGCACCACAGAC
AAAGAGTGAGTCTAAGATTTTTACCTATACTTAGTTGCTTCGACAAAAAA
GTACGCAAGGTCGAGATGAAATTTGTAATGTTTCTGTATGGAGGAATAGT
ACTAATAGTAATAATGACAATTGAGTAGTAAATCTTCAATTTTTCAACTT
AGCCCCTTCTGTACTTTGTTTTCGTTATTTTTTTGTTACCTACAGAATGG
TGTAGGAAGAGCAGCCCAACAGCCAGTTTGGGTATTTGGAATGGTGGACA
CCCAATTTACTCCTGCCCGCGGGTACATGGAAATAGTACAAAGGAGAGAC
CGTGCAACATTGACCGGTGTGATCAATAGAAATTTGGCAGCAAACAGCAC
CATTCATTCGGACTCCTGGGCTGCATACAATAACCTGCCACTGCATGTCC
CAAACTGTATCCAGCATGATCGTGTGAACCATAGGTATCATTTTGTGGAC
CCAAATACTGGAGCACACACACAGGTTTGTTATAAGTTTACGCTTGATTA
ACGTTTATCATTCTTGACTGGTTTAACTTGATCAAATATAACGCAATAAT
TTGAAGGGAACAATTTTAAGTCGACGAAGCGGAAAATATCTTTTTTACGG
TACTTTTTTAAAAAGATGTCTTTGAAGCTTAAAGTACATTTTTAACAACT
CTTCTCTTTTAAGAACATCGAATCCTACTGGAACAGGTTTAAGCATGGAA
TTAAATCAATGAAAGGGGTTAGAAGAGTGGATCTGACCAGTTATTTAAAG
GAATTTATATGGCGGTAAGTTGAATTTGCTCAATCTTTTGAATAATTTGC
TAGCATTTATTGTGATGTTATTTACTTTTTGCTAAAGAAAACCCACAATT
TTTATATCTTTTAAATATAAATTCTAAATTTTGTTTTTCTTCTCTAGTGA
TTGGTATGGTTTGGATGCCCCTTTGGACAATATCATCCAAGCTATCAACA
TCGACTATCCACTATAGAAGGTAAAAGCAGTAGATTTCTAACATTCATAC
ATTCATAAATTTTGAGATTGTTTAGAGAATATGGGTTTTACCACGTTTTC
CATGTATTTGAGTATTTGAGAATTATTTCATTTTCCCAAAGCTCAAAATT
TTCTGTTGTAACAGTTTTATTTTCTACATCTTTAGATGATTCATTTCCTT
GGCTGCTGACAAACTTAACCGATCTTTTGTTACTTTTTATTTATTAGTTT
TTGTCACATTATCGTACACATGTAAATAGCTAAACCTATATACAATTCAA
GTTTCAGAAGTTTGTACTTTCTTTTTATTATTGTAATCAGAAAGACATTG
TTGCGTTTCATAAATATTTGGTTCTTTGGCTTATGTTGCCTGTCCAGATG
CCGAAAATGAAGAGGGAAAAATTATTTGTTAGAGTCACGAGAAAAGCATA
TCTTCCCGCGGGTTTTTTTTTTCCTATCCATCTTCCAATACCATGATGCA
TTACCCAAAACTGAAATACGATATCGTTTAATAGACATTCAACACCAGTA
TAAAAACGACTATTTTTAAACATCAAATTTTCGAACTCTTTTGGCCTTTC
CACGAAGCATTATTATATAAGTATACGGACATTAAAACCTACTCAATTCT
AAGCCACTGCGTGTTGGCCCAAATTACTTAGAGATTGAAATTACAAACAA
TCAGTCTCCTTAAATCAGGCTCAGAAAGCTTCAAGAGTTTTGGCATACGC
CTAGATATGCTTATACTTTGGGTATTAGTGGACCAGTGATTTTGGGTAAA
TAGTGGACCAGTCGAGGATTTGGGGTAAAAAGTGAACCAGTGAGATATTT
TGGGTAAATAGTGGACCAGTGAGACATTTTGGGTAAATAGTGGACCAGTG
ACATATTTTGGGTAAATAGTGGACCAGTGACATATTTTGGGTAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024523XLOC_024523Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040361-exon-sc0002399-1575043694:4327..5031TCONS_00040361-exon-sc0002399-1575043694:4327..5031Clytia hemisphaericaexon
TCONS_00040361-exon-sc0002399-1575043694:3858..4136TCONS_00040361-exon-sc0002399-1575043694:3858..4136Clytia hemisphaericaexon
TCONS_00040361-exon-sc0002399-1575043694:3568..3668TCONS_00040361-exon-sc0002399-1575043694:3568..3668Clytia hemisphaericaexon
TCONS_00040361-exon-sc0002399-1575043694:3362..3434TCONS_00040361-exon-sc0002399-1575043694:3362..3434Clytia hemisphaericaexon
TCONS_00040361-exon-sc0002399-1575043694:2435..3196TCONS_00040361-exon-sc0002399-1575043694:2435..3196Clytia hemisphaericaexon
TCONS_00040361-exon-sc0002399-1510915933:4327..5031TCONS_00040361-exon-sc0002399-1510915933:4327..5031Clytia hemisphaericaexon
TCONS_00040361-exon-sc0002399-1510915933:3858..4136TCONS_00040361-exon-sc0002399-1510915933:3858..4136Clytia hemisphaericaexon
TCONS_00040361-exon-sc0002399-1510915933:3568..3668TCONS_00040361-exon-sc0002399-1510915933:3568..3668Clytia hemisphaericaexon
TCONS_00040361-exon-sc0002399-1510915933:3362..3434TCONS_00040361-exon-sc0002399-1510915933:3362..3434Clytia hemisphaericaexon
TCONS_00040361-exon-sc0002399-1510915933:2435..3196TCONS_00040361-exon-sc0002399-1510915933:2435..3196Clytia hemisphaericaexon
TCONS_00040361-exon-sc0002399-1491911889:4327..5031TCONS_00040361-exon-sc0002399-1491911889:4327..5031Clytia hemisphaericaexon
TCONS_00040361-exon-sc0002399-1491911889:3858..4136TCONS_00040361-exon-sc0002399-1491911889:3858..4136Clytia hemisphaericaexon
TCONS_00040361-exon-sc0002399-1491911889:3568..3668TCONS_00040361-exon-sc0002399-1491911889:3568..3668Clytia hemisphaericaexon
TCONS_00040361-exon-sc0002399-1491911889:3362..3434TCONS_00040361-exon-sc0002399-1491911889:3362..3434Clytia hemisphaericaexon
TCONS_00040361-exon-sc0002399-1491911889:2435..3196TCONS_00040361-exon-sc0002399-1491911889:2435..3196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002399supercontigsc0002399:2435..5031 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.458167	0.397781	0.165307	0	1.81219	1.08662	1.73202	2.68879	0.921326	0.767225	0.591666	1.24057	1.06524	0.775149	0.226963	0.299057	0.575734	0.124666	0.616474	0	0.629408	0.827966	0.215477	0.125362	1.20828	1.86711	0.403984	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top