transcript:BL95356_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95356_evm0
Unique Nametranscript:BL95356_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95356_evm0

>transcript:BL95356_evm0-protein ID=transcript:BL95356_evm0-protein|Name=transcript:BL95356_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=266bp
MAQGNRSHGSDFDDVVVRMEIEENHSVGTGAQGYYRPRIEPVYRNYYYSG
DSGWDCFTDSTKVQLRDGRKIAMKDLKPGDWVKVVKPDGRIVYSKFIAML
HYEPDEKTTFLQIYVEGKSGPICLTANHLIYATKSHAQANIGRPVFAKDV
EEGMFVFVANEEGKKVVPTEVLEVRETEATGFCAPLTKEGTIMADGVAAS
CYTIVDHEISHKAFWLLRRLDGVKSALGGVGKEREVATVGIHWYPKALMK
VYKFLFHVQPASTTAM
Run BLAST on NCBI

mRNA from alignment at Sc0000026:1231571..1233596+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95356_evm0 ID=transcript:BL95356_evm0|Name=transcript:BL95356_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=2026bp|location=Sequence derived from alignment at Sc0000026:1231571..1233596+ (Branchiostoma lanceolatum)
ATGGCACAGGGGAACAGATCACATGGTAGCGACTTTGACGATGTCGTTGT
GAGGATGGAAATCGAAGAAAATCATTCCGTAGGAACTGGGGCACAAGGGT
ACTACCGTCCACGCATAGGTATGTTAAAAATAAGAAATATATCATGGACA
TGGGTAGATTATAAGCCCATTTATATGTTCAAGACCCTACTTAGGGTTCC
TCAATCCAGCATTTGCCGAGCAGTTGGTTATTTCATTTTATGATTCTTGT
ACGATTCTTGTAAGTTTAAGGTTGCTAATTGTCACCAATTTATGCAGCAG
TATATTTTTGTGTGTGCAAAAATACCCCAACTTTTTAGTCAAGCAGAATA
GAGTCTCTTTCAACCGTATTACATGTGTTAACAAAAGCAGTAGCATGAAA
TTTCGTCTGTGTTGGTAAATGACATAATATGAAACAAAAGCAGTAGTATA
GAAATTCTAAGTTAGGGAACCGTGACTTATAACTTGTTTGAAAAAAAAAA
AAAACCATGTGGCATGGGATGATATCTGCATTTCGTACTTGCTAGCTTAA
TATACACTACAGTGCAAATCTATAAAGCAAGCAGCTGATGGAACGTTGTT
GTTGTTGTTGTATTGTGAAATGTACGTTTAAAAGTGTTTTTTTTTACAAT
CATGTTTTTCTGTTTCAGAGCCCGTATATCGCAACTATTACTACAGCGGC
GATTCTGGTAAGTTTGCTACAGATCATATTGTGAAGACGTATTATCATAA
TCTCAGTTTCGCCTAAGCCCGCTTTGGAGATTAATTGCCGGTAATTGTCT
TTTACCTATGGACATGAGTCAAACTAAGATTGGCAGGTTTATCTAAAGCT
TTCCTGACAAATACATTTTGAAAATGACTTGAATTTTTACTACAACGACC
AGGCTTTATGTAGTTAATCGTTACAATACTAGAGTAATTTGTTTTTCATA
GTTTCGGTCACAAGACACGCAGGCGCACTAGCGCGAAGGGAAATATAAAA
CTGCTCTGTGAAATTTGTCGATTTCACAATCTGCAAGATGTCACAGCGTA
ACAAGAGTCATGGGAGTGACAGAAGTGGTATATAAGTCTTTAAGTATGGT
TGGCAACAACGTTTATAGAGCTGAAATACGGAAGAATTTCACGTAACAAA
ACTTTATATCTATTTTACTTCTCTCTCAAAAAAGTTCTCAATGAACTTCT
TGTCTTTTTCTTTCAACAGGCTGGGACTGTTTCACAGACAGCACCAAAGT
CCAGCTCCGTGATGGCCGTAAAATCGCCATGAAGGACCTGAAGCCCGGGG
ACTGGGTCAAAGTCGTGAAGCCTGATGGCCGAATCGTGTACAGCAAGTTC
ATCGCCATGCTTCACTACGAACCAGACGAGAAAACGACCTTCCTCCAAAT
CTACGTCGAGGGAAAGAGTGGACCAATTTGTTTGACTGCCAACCATCTGA
TTTACGCCACCAAGAGCCACGCACAAGCAAACATCGGTAGGTTTTTCTCC
ATATCATTTACCCTAGGGACTATTTGAGGGTTTTGTTCGCAGGACACGGT
AGCTGATATTTTCCCGCTTTTGGATAAAACAAAATGGCGCTTCTTTCCCA
TGCTTTCTCCTTTTATAAGTCGCTAAAACTGCGTTATTTCCCCCACTAGG
GCGTCCTGTTTTTGCCAAAGACGTGGAAGAGGGTATGTTCGTCTTTGTGG
CCAACGAGGAAGGCAAAAAAGTGGTCCCGACTGAAGTGCTCGAGGTCCGA
GAGACTGAAGCAACTGGATTCTGCGCCCCGCTAACTAAGGAAGGAACCAT
CATGGCGGACGGCGTGGCGGCCTCGTGCTATACCATTGTTGACCACGAGA
TCTCTCACAAGGCCTTCTGGCTGCTCCGTCGCCTGGACGGGGTTAAGTCA
GCCCTAGGAGGCGTTGGGAAAGAGAGGGAGGTGGCCACAGTTGGCATCCA
CTGGTACCCCAAAGCTCTGATGAAAGTGTACAAGTTTCTGTTCCATGTTC
AGCCTGCTAGTACTACAGCTATGTAA

Coding sequence (CDS) from alignment at Sc0000026:1231571..1233596+

>transcript:BL95356_evm0 ID=transcript:BL95356_evm0|Name=transcript:BL95356_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=3204bp|location=Sequence derived from alignment at Sc0000026:1231571..1233596+ (Branchiostoma lanceolatum)
ATGGCACAGGGGAACAGATCACATGGTAGCGACTTTGACGATGTCGTTGT
GAGGATGGAAATCGAAGAAAATCATTCCGTAGGAACTGGGGCACAAGGGT
ACTACCGTCCACGCATAGAGCCCGTATATCGCAACTATTACTACAGCGGC
GATTCTGGCTGGGACTGTTTCACAGACAGCACCAAAGTCCAGCTCCGTGA
TGGCCGTAAAATCGCCATGAAGGACCTGAAGCCCGGGGACTGGGTCAAAG
TCGTGAAGCCTGATGGCCGAATCGTGTACAGCAAGTTCATCGCCATGCTT
CACTACGAACCAGACGAGAAAACGACCTTCCTCCAAATCTACGTCGAGGG
AAAGAGTGGACCAATTTGTTTGACTGCCAACCATCTGATTTACGCCACCA
AGAGCCACGCACAAGCAAACATCGGGCGTCCTGTTTTTGCCAAAGACGTG
GAAGAGGGTATGTTCGTCTTTGTGGCCAACGAGGAAGGCAAAAAAGTGGT
CCCGACTGAAGTGCTCGAGGTCCGAGAGACTGAAGCAACTGGATTCTGCG
CCCCGCTAACTAAGGAAGGAACCATCATGGCGGACGGCGTGGCGGCCTCG
TGCTATACCATTGTTGACCACGAGATCTCTCACAAGGCCTTCTGGCTGCT
CCGTCGCCTGGACGGGGTTAAGTCAGCCCTAGGAGGCGTTGGGAAAGAGA
GGGAGGTGGCCACAGTTGGCATCCACTGGTACCCCAAAGCTCTGATGAAA
GTGTACAAGTTTCTGTTCCATGTTCAGCCTGCTAGTACTACAGCTATGTA
AATGGCACAGGGGAACAGATCACATGGTAGCGACTTTGACGATGTCGTTG
TGAGGATGGAAATCGAAGAAAATCATTCCGTAGGAACTGGGGCACAAGGG
TACTACCGTCCACGCATAGAGCCCGTATATCGCAACTATTACTACAGCGG
CGATTCTGGCTGGGACTGTTTCACAGACAGCACCAAAGTCCAGCTCCGTG
ATGGCCGTAAAATCGCCATGAAGGACCTGAAGCCCGGGGACTGGGTCAAA
GTCGTGAAGCCTGATGGCCGAATCGTGTACAGCAAGTTCATCGCCATGCT
TCACTACGAACCAGACGAGAAAACGACCTTCCTCCAAATCTACGTCGAGG
GAAAGAGTGGACCAATTTGTTTGACTGCCAACCATCTGATTTACGCCACC
AAGAGCCACGCACAAGCAAACATCGGGCGTCCTGTTTTTGCCAAAGACGT
GGAAGAGGGTATGTTCGTCTTTGTGGCCAACGAGGAAGGCAAAAAAGTGG
TCCCGACTGAAGTGCTCGAGGTCCGAGAGACTGAAGCAACTGGATTCTGC
GCCCCGCTAACTAAGGAAGGAACCATCATGGCGGACGGCGTGGCGGCCTC
GTGCTATACCATTGTTGACCACGAGATCTCTCACAAGGCCTTCTGGCTGC
TCCGTCGCCTGGACGGGGTTAAGTCAGCCCTAGGAGGCGTTGGGAAAGAG
AGGGAGGTGGCCACAGTTGGCATCCACTGGTACCCCAAAGCTCTGATGAA
AGTGTACAAGTTTCTGTTCCATGTTCAGCCTGCTAGTACTACAGCTATGT
AAATGGCACAGGGGAACAGATCACATGGTAGCGACTTTGACGATGTCGTT
GTGAGGATGGAAATCGAAGAAAATCATTCCGTAGGAACTGGGGCACAAGG
GTACTACCGTCCACGCATAGAGCCCGTATATCGCAACTATTACTACAGCG
GCGATTCTGGCTGGGACTGTTTCACAGACAGCACCAAAGTCCAGCTCCGT
GATGGCCGTAAAATCGCCATGAAGGACCTGAAGCCCGGGGACTGGGTCAA
AGTCGTGAAGCCTGATGGCCGAATCGTGTACAGCAAGTTCATCGCCATGC
TTCACTACGAACCAGACGAGAAAACGACCTTCCTCCAAATCTACGTCGAG
GGAAAGAGTGGACCAATTTGTTTGACTGCCAACCATCTGATTTACGCCAC
CAAGAGCCACGCACAAGCAAACATCGGGCGTCCTGTTTTTGCCAAAGACG
TGGAAGAGGGTATGTTCGTCTTTGTGGCCAACGAGGAAGGCAAAAAAGTG
GTCCCGACTGAAGTGCTCGAGGTCCGAGAGACTGAAGCAACTGGATTCTG
CGCCCCGCTAACTAAGGAAGGAACCATCATGGCGGACGGCGTGGCGGCCT
CGTGCTATACCATTGTTGACCACGAGATCTCTCACAAGGCCTTCTGGCTG
CTCCGTCGCCTGGACGGGGTTAAGTCAGCCCTAGGAGGCGTTGGGAAAGA
GAGGGAGGTGGCCACAGTTGGCATCCACTGGTACCCCAAAGCTCTGATGA
AAGTGTACAAGTTTCTGTTCCATGTTCAGCCTGCTAGTACTACAGCTATG
TAAATGGCACAGGGGAACAGATCACATGGTAGCGACTTTGACGATGTCGT
TGTGAGGATGGAAATCGAAGAAAATCATTCCGTAGGAACTGGGGCACAAG
GGTACTACCGTCCACGCATAGAGCCCGTATATCGCAACTATTACTACAGC
GGCGATTCTGGCTGGGACTGTTTCACAGACAGCACCAAAGTCCAGCTCCG
TGATGGCCGTAAAATCGCCATGAAGGACCTGAAGCCCGGGGACTGGGTCA
AAGTCGTGAAGCCTGATGGCCGAATCGTGTACAGCAAGTTCATCGCCATG
CTTCACTACGAACCAGACGAGAAAACGACCTTCCTCCAAATCTACGTCGA
GGGAAAGAGTGGACCAATTTGTTTGACTGCCAACCATCTGATTTACGCCA
CCAAGAGCCACGCACAAGCAAACATCGGGCGTCCTGTTTTTGCCAAAGAC
GTGGAAGAGGGTATGTTCGTCTTTGTGGCCAACGAGGAAGGCAAAAAAGT
GGTCCCGACTGAAGTGCTCGAGGTCCGAGAGACTGAAGCAACTGGATTCT
GCGCCCCGCTAACTAAGGAAGGAACCATCATGGCGGACGGCGTGGCGGCC
TCGTGCTATACCATTGTTGACCACGAGATCTCTCACAAGGCCTTCTGGCT
GCTCCGTCGCCTGGACGGGGTTAAGTCAGCCCTAGGAGGCGTTGGGAAAG
AGAGGGAGGTGGCCACAGTTGGCATCCACTGGTACCCCAAAGCTCTGATG
AAAGTGTACAAGTTTCTGTTCCATGTTCAGCCTGCTAGTACTACAGCTAT
GTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95356gene:BL95356Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95356_evm0-E1BL95356_evm0-E1-1564476830-164308Branchiostoma lanceolatumexon
BL95356_evm0-E2BL95356_evm0-E2-1564476830-164310Branchiostoma lanceolatumexon
BL95356_evm0-E3BL95356_evm0-E3-1564476830-164312Branchiostoma lanceolatumexon
BL95356_evm0-E4BL95356_evm0-E4-1564476830-164314Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95356_evm0transcript:BL95356_evm0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:1231571..1233596 +
Properties
Property NameValue
Transcript idBL95356_evm0
Biotypeprotein_coding