TCONS_00040279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040279
Unique NameTCONS_00040279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040279 ID=TCONS_00040279|Name=TCONS_00040279|organism=Clytia hemisphaerica|type=transcript|length=485bp
ATTAAATCTATCATCATTGGACTAACCAAAGCCATTGCTTTTTTACAAGA
CAAACGGATTCTTCATAACATGATTGTTCCAGAAAACATTTGTTTAAAGT
ACAATGGCAAGATATACATACCCGTTCTTGTTGGATTTTCGCATGCTATT
AGACGCGATAGTGCAAGAACTCTCACATTATATCAACAGAAGCAGTTTGA
CGAGTTTATGCACATGCCACCAGAAGTACGAAAAGGAAAAGTGCCACCCT
CAGCATACTCAGACATCTATGCTTTCACAAGAATCTTAAGGGGATTCATG
AAGTATCCTAGTGTCCAAAATGTCATAACTTATGATATGATTCAAACTTT
ACTTGACATACCGTTTGGATCGGAACTTTTGATAGATTTTGTTTccagtt
ttttaaatgaatAGTTTAAATCAATGTAAGTGAATGATATTCAACAAACA
CCTTTTACAGCATTTCTATTTTGATATGTTTATTc
Run BLAST on NCBI

protein sequence of TCONS_00040279-protein

>TCONS_00040279-protein ID=TCONS_00040279-protein|Name=TCONS_00040279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
IKSIIIGLTKAIAFLQDKRILHNMIVPENICLKYNGKIYIPVLVGFSHAI
RRDSARTLTLYQQKQFDEFMHMPPEVRKGKVPPSAYSDIYAFTRILRGFM
KYPSVQNVITYDMIQTLLDIPFGSELLIDFVSSFLNE
Run BLAST on NCBI

transcript from alignment at sc0002375:18930..19414

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040279 ID=TCONS_00040279|Name=TCONS_00040279|organism=Clytia hemisphaerica|type=transcript|length=485bp|location=Sequence derived from alignment at sc0002375:18930..19414 (Clytia hemisphaerica)
gAATAAACATATCAAAATAGAAATGCTGTAAAAGGTGTTTGTTGAATATC
ATTCACTTACATTGATTTAAACTattcatttaaaaaactggAAACAAAAT
CTATCAAAAGTTCCGATCCAAACGGTATGTCAAGTAAAGTTTGAATCATA
TCATAAGTTATGACATTTTGGACACTAGGATACTTCATGAATCCCCTTAA
GATTCTTGTGAAAGCATAGATGTCTGAGTATGCTGAGGGTGGCACTTTTC
CTTTTCGTACTTCTGGTGGCATGTGCATAAACTCGTCAAACTGCTTCTGT
TGATATAATGTGAGAGTTCTTGCACTATCGCGTCTAATAGCATGCGAAAA
TCCAACAAGAACGGGTATGTATATCTTGCCATTGTACTTTAAACAAATGT
TTTCTGGAACAATCATGTTATGAAGAATCCGTTTGTCTTGTAAAAAAGCA
ATGGCTTTGGTTAGTCCAATGATGATAGATTTAAT

Coding sequence (CDS) from alignment at sc0002375:18930..19414

>TCONS_00040279 ID=TCONS_00040279|Name=TCONS_00040279|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0002375:18930..19414 (Clytia hemisphaerica)
CTattcatttaaaaaactggAAACAAAATCTATCAAAAGTTCCGATCCAA
ACGGTATGTCAAGTAAAGTTTGAATCATATCATAAGTTATGACATTTTGG
ACACTAGGATACTTCATGAATCCCCTTAAGATTCTTGTGAAAGCATAGAT
GTCTGAGTATGCTGAGGGTGGCACTTTTCCTTTTCGTACTTCTGGTGGCA
TGTGCATAAACTCGTCAAACTGCTTCTGTTGATATAATGTGAGAGTTCTT
GCACTATCGCGTCTAATAGCATGCGAAAATCCAACAAGAACGGGTATGTA
TATCTTGCCATTGTACTTTAAACAAATGTTTTCTGGAACAATCATGTTAT
GAAGAATCCGTTTGTCTTGTAAAAAAGCAATGGCTTTGGTTAGTCCAATG
ATGATAGATTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024449XLOC_024449Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040279-exon-sc0002375-1491911889:18930..19414TCONS_00040279-exon-sc0002375-1491911889:18930..19414Clytia hemisphaericaexon
TCONS_00040279-exon-sc0002375-1510915933:18930..19414TCONS_00040279-exon-sc0002375-1510915933:18930..19414Clytia hemisphaericaexon
TCONS_00040279-exon-sc0002375-1575043694:18930..19414TCONS_00040279-exon-sc0002375-1575043694:18930..19414Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040279-proteinTCONS_00040279-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002375supercontigsc0002375:18930..19414 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.11258	0.51503	1.67803	1.26602	1.57478	1.91141	1.31024	0.840814	0.873258	0.722954	0.306421	0.411788	0.330346	0.405547	0	0.303967	0.386002	0	0.0719148	0.211195	0.197567	0.420701	0.0860031	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001245Ser-Thr/Tyr_kinase_cat_dom
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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