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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL81713_cuf0 >transcript:BL81713_cuf0-protein ID=transcript:BL81713_cuf0-protein|Name=transcript:BL81713_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=842bp
VRPLPWCEDLNLHLGEVYTNLQLQSRDGRGHFQNTDTIVSLAGIYKINSG
EDSQVNVRSAMRKIRVEGDPGIGKSCSCQKLAYDWSYGKLDRFKIVFFLE
MRHLAGKVKDAIFEQLLPQDTKTTQDQLWSYIQENQDDVLFILDGLDELS
QTASEVTDVVNLIQGKILRSCHVLVTSRPYHCVKDLEKCHKFYKIVGYTK
ANSEEFIHKYFCESPEYASRLVEQLQRNSNLSEIVVNPLNNVLICVVWEE
NNQELPSSKAELYRDIVHSVAKRFCTKRAIPMEGDTLPPDIEEALRGLEQ
LSWEGLEEEQLQFNQDEITKKYGTTADNMLNMGLLTRDYSFSRIKRTCYC
AFLHKTFQEFMAARYISDLVINDGSNREEGMKCLRSLFGLNNGSEIDREL
ILSSRSKYREVQDLLLSILGENADPLFDMFAEELNNAKTDRDRELLSFLC
VLWLGKIESAGVRMAEIVAPCLLRHLTNINNLVGFSNDFVSHINWCVGLM
HVLTCQKKLASTNNPRFTQHLTVDLDRIGGIGADHSLAQEKLDMLESTLS
DYGTMRSVTLRATLAGTRAGNHTFSPLPTLIPRNGAERVSFHIDIKSLVR
SLEQLSEVPRLEDVSITVESIGTDRCDADFSEYDRLLAQMIRRQSSLKSI
KLEIKTWNRTDPETGNLTATLQSISEHTKLEVVEFTLPRTDGVMVVNEEM
HIISQTYTFNVKPTVQELTECIKNNRVLKTLRLQWRRGPYLTNNIEDVVC
NRQSLSRLCSAIRRNQTLETLVIEEMFCDFEGHREIIDDLKRNKPSNYKE
LSITMIDRGKIKVKRTFQAAAEGDPIAREQLESQGITISFKK Run BLAST on NCBI mRNA from alignment at Sc0000024:1781607..1784191- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL81713_cuf0 ID=transcript:BL81713_cuf0|Name=transcript:BL81713_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2585bp|location=Sequence derived from alignment at Sc0000024:1781607..1784191- (Branchiostoma lanceolatum)
TGTGCGGCCTCTACCGTGGTGCGAAGACCTCAACCTGCATCTTGGAGAAG
TCTACACCAACCTGCAGCTTCAGAGCAGGGACGGTAGGGGGCACTTCCAG
AACACAGACACTATTGTAAGCTTAGCAGGTATTTACAAAATAAATTCAGG
TGAAGATAGTCAAGTTAACGTTAGGTCAGCTATGAGAAAGATACGAGTAG
AGGGGGACCCTGGTATTGGGAAGTCGTGCTCTTGTCAGAAGCTTGCTTAT
GATTGGTCCTATGGGAAACTGGACAGGTTTAAGATTGTCTTCTTTCTTGA
AATGCGACACTTAGCTGGGAAAGTCAAAGATGCTATTTTTGAGCAGCTCC
TTCCACAAGATACAAAAACAACCCAGGACCAGCTCTGGTCCTACATCCAA
GAGAACCAGGATGATGTTCTCTTCATTCTAGACGGTCTAGATGAGCTCAG
TCAGACAGCTAGTGAAGTCACAGATGTGGTGAACTTGATTCAGGGTAAAA
TCCTCAGGAGCTGTCATGTCCTGGTGACCTCCAGGCCGTACCACTGTGTC
AAAGACCTGGAGAAATGTCACAAGTTCTACAAAATTGTAGGCTACACTAA
GGCAAATTCCGAGGAGTTCATACACAAATACTTTTGCGAGTCCCCAGAGT
ATGCCTCAAGACTAGTGGAACAGCTTCAAAGAAACAGCAATTTGTCAGAA
ATAGTAGTTAATCCCCTCAACAACGTGCTCATATGTGTTGTGTGGGAAGA
GAACAACCAAGAACTGCCCTCGAGCAAAGCTGAACTATATCGAGATATTG
TCCATTCAGTTGCCAAACGATTCTGTACAAAGAGAGCCATTCCAATGGAA
GGTGATACACTTCCTCCTGACATAGAAGAAGCATTGCGAGGCCTGGAACA
ACTATCCTGGGAGGGGCTAGAGGAGGAGCAGCTCCAGTTTAACCAAGATG
AGATCACAAAGAAGTACGGCACAACTGCTGATAACATGTTGAACATGGGC
CTCCTGACTAGAGATTACTCTTTCTCCAGAATCAAACGCACCTGCTACTG
CGCCTTTCTGCACAAAACGTTTCAAGAATTCATGGCCGCTCGCTATATCA
GTGACTTGGTCATCAATGATGGAAGTAACAGAGAAGAGGGGATGAAATGT
CTCCGTAGTTTGTTTGGTTTGAATAACGGTTCTGAGATTGACAGGGAACT
GATTTTAAGTAGCCGCAGTAAATACAGGGAGGTTCAGGACTTGTTGCTTT
CAATCCTGGGTGAGAACGCAGACCCGCTGTTTGACATGTTTGCAGAGGAA
CTAAACAATGCTAAAACCGATAGGGACAGGGAACTGTTGTCGTTTCTGTG
TGTCCTGTGGCTGGGGAAAATTGAATCTGCAGGTGTTAGAATGGCAGAGA
TTGTGGCACCATGTCTGTTGCGGCACTTAACTAACATCAACAACCTAGTA
GGCTTTTCGAATGACTTTGTTAGTCATATCAACTGGTGTGTAGGTTTGAT
GCACGTACTGACCTGTCAAAAGAAACTCGCTTCAACCAACAATCCGAGGT
TCACACAGCATTTGACTGTTGACTTAGATCGTATAGGCGGTATAGGTGCT
GATCATTCTTTAGCACAAGAGAAACTTGACATGCTGGAAAGCACATTATC
AGATTATGGCACAATGCGCTCAGTGACATTACGAGCGACCTTAGCTGGTA
CTAGGGCTGGTAACCATACTTTCTCCCCATTGCCTACTTTGATACCCCGG
AATGGAGCAGAGAGGGTGTCCTTTCACATTGACATTAAGTCACTGGTAAG
GTCATTGGAACAGCTTTCTGAGGTACCGAGGTTAGAGGATGTCAGCATTA
CTGTAGAGTCGATTGGCACGGACCGGTGTGATGCAGACTTCTCAGAATAT
GACAGGCTGTTGGCCCAAATGATCAGGAGGCAGAGCTCTCTCAAGTCCAT
AAAGCTGGAGATAAAAACTTGGAATCGTACCGACCCTGAAACAGGTAACC
TAACAGCGACCCTACAGAGCATCTCAGAACATACAAAACTAGAGGTCGTT
GAGTTCACGCTTCCAAGGACTGATGGTGTAATGGTGGTCAATGAAGAAAT
GCACATAATTTCCCAAACATACACATTTAATGTGAAGCCAACAGTTCAAG
AACTCACAGAATGTATAAAGAACAACAGGGTACTGAAGACACTGAGGCTT
CAGTGGAGGCGCGGGCCTTATTTAACAAATAACATTGAGGACGTAGTCTG
CAACCGTCAGTCCCTCTCAAGGCTGTGTTCAGCGATCCGGAGGAACCAAA
CCCTCGAAACATTGGTGATTGAGGAGATGTTCTGTGACTTTGAGGGTCAT
CGAGAGATAATTGATGATCTGAAGCGTAATAAACCTAGCAACTATAAGGA
ACTCAGTATAACCATGATCGACAGGGGGAAAATCAAGGTTAAAAGAACAT
TTCAGGCAGCTGCCGAGGGTGACCCCATAGCAAGGGAACAGCTAGAGAGC
CAGGGCATCACGATCAGCTTTAAGAAATAGGTGCCCAAAAAATTAGGTAC
GCAGAGAGAAATTTTGGCTCCATATGATATTTGAT Coding sequence (CDS) from alignment at Sc0000024:1781607..1784191- >transcript:BL81713_cuf0 ID=transcript:BL81713_cuf0|Name=transcript:BL81713_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2529bp|location=Sequence derived from alignment at Sc0000024:1781607..1784191- (Branchiostoma lanceolatum)
GTGCGGCCTCTACCGTGGTGCGAAGACCTCAACCTGCATCTTGGAGAAGT
CTACACCAACCTGCAGCTTCAGAGCAGGGACGGTAGGGGGCACTTCCAGA
ACACAGACACTATTGTAAGCTTAGCAGGTATTTACAAAATAAATTCAGGT
GAAGATAGTCAAGTTAACGTTAGGTCAGCTATGAGAAAGATACGAGTAGA
GGGGGACCCTGGTATTGGGAAGTCGTGCTCTTGTCAGAAGCTTGCTTATG
ATTGGTCCTATGGGAAACTGGACAGGTTTAAGATTGTCTTCTTTCTTGAA
ATGCGACACTTAGCTGGGAAAGTCAAAGATGCTATTTTTGAGCAGCTCCT
TCCACAAGATACAAAAACAACCCAGGACCAGCTCTGGTCCTACATCCAAG
AGAACCAGGATGATGTTCTCTTCATTCTAGACGGTCTAGATGAGCTCAGT
CAGACAGCTAGTGAAGTCACAGATGTGGTGAACTTGATTCAGGGTAAAAT
CCTCAGGAGCTGTCATGTCCTGGTGACCTCCAGGCCGTACCACTGTGTCA
AAGACCTGGAGAAATGTCACAAGTTCTACAAAATTGTAGGCTACACTAAG
GCAAATTCCGAGGAGTTCATACACAAATACTTTTGCGAGTCCCCAGAGTA
TGCCTCAAGACTAGTGGAACAGCTTCAAAGAAACAGCAATTTGTCAGAAA
TAGTAGTTAATCCCCTCAACAACGTGCTCATATGTGTTGTGTGGGAAGAG
AACAACCAAGAACTGCCCTCGAGCAAAGCTGAACTATATCGAGATATTGT
CCATTCAGTTGCCAAACGATTCTGTACAAAGAGAGCCATTCCAATGGAAG
GTGATACACTTCCTCCTGACATAGAAGAAGCATTGCGAGGCCTGGAACAA
CTATCCTGGGAGGGGCTAGAGGAGGAGCAGCTCCAGTTTAACCAAGATGA
GATCACAAAGAAGTACGGCACAACTGCTGATAACATGTTGAACATGGGCC
TCCTGACTAGAGATTACTCTTTCTCCAGAATCAAACGCACCTGCTACTGC
GCCTTTCTGCACAAAACGTTTCAAGAATTCATGGCCGCTCGCTATATCAG
TGACTTGGTCATCAATGATGGAAGTAACAGAGAAGAGGGGATGAAATGTC
TCCGTAGTTTGTTTGGTTTGAATAACGGTTCTGAGATTGACAGGGAACTG
ATTTTAAGTAGCCGCAGTAAATACAGGGAGGTTCAGGACTTGTTGCTTTC
AATCCTGGGTGAGAACGCAGACCCGCTGTTTGACATGTTTGCAGAGGAAC
TAAACAATGCTAAAACCGATAGGGACAGGGAACTGTTGTCGTTTCTGTGT
GTCCTGTGGCTGGGGAAAATTGAATCTGCAGGTGTTAGAATGGCAGAGAT
TGTGGCACCATGTCTGTTGCGGCACTTAACTAACATCAACAACCTAGTAG
GCTTTTCGAATGACTTTGTTAGTCATATCAACTGGTGTGTAGGTTTGATG
CACGTACTGACCTGTCAAAAGAAACTCGCTTCAACCAACAATCCGAGGTT
CACACAGCATTTGACTGTTGACTTAGATCGTATAGGCGGTATAGGTGCTG
ATCATTCTTTAGCACAAGAGAAACTTGACATGCTGGAAAGCACATTATCA
GATTATGGCACAATGCGCTCAGTGACATTACGAGCGACCTTAGCTGGTAC
TAGGGCTGGTAACCATACTTTCTCCCCATTGCCTACTTTGATACCCCGGA
ATGGAGCAGAGAGGGTGTCCTTTCACATTGACATTAAGTCACTGGTAAGG
TCATTGGAACAGCTTTCTGAGGTACCGAGGTTAGAGGATGTCAGCATTAC
TGTAGAGTCGATTGGCACGGACCGGTGTGATGCAGACTTCTCAGAATATG
ACAGGCTGTTGGCCCAAATGATCAGGAGGCAGAGCTCTCTCAAGTCCATA
AAGCTGGAGATAAAAACTTGGAATCGTACCGACCCTGAAACAGGTAACCT
AACAGCGACCCTACAGAGCATCTCAGAACATACAAAACTAGAGGTCGTTG
AGTTCACGCTTCCAAGGACTGATGGTGTAATGGTGGTCAATGAAGAAATG
CACATAATTTCCCAAACATACACATTTAATGTGAAGCCAACAGTTCAAGA
ACTCACAGAATGTATAAAGAACAACAGGGTACTGAAGACACTGAGGCTTC
AGTGGAGGCGCGGGCCTTATTTAACAAATAACATTGAGGACGTAGTCTGC
AACCGTCAGTCCCTCTCAAGGCTGTGTTCAGCGATCCGGAGGAACCAAAC
CCTCGAAACATTGGTGATTGAGGAGATGTTCTGTGACTTTGAGGGTCATC
GAGAGATAATTGATGATCTGAAGCGTAATAAACCTAGCAACTATAAGGAA
CTCAGTATAACCATGATCGACAGGGGGAAAATCAAGGTTAAAAGAACATT
TCAGGCAGCTGCCGAGGGTGACCCCATAGCAAGGGAACAGCTAGAGAGCC
AGGGCATCACGATCAGCTTTAAGAAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000024 | genome | Sc0000024:1781607..1784191 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL81713_cuf0 |
| Biotype | protein_coding |
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