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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040031 ID=TCONS_00040031|Name=TCONS_00040031|organism=Clytia hemisphaerica|type=transcript|length=1559bp
TGCATAATGTTCCAGGGAGCGGACAAAATTTACAACAACACAAAGGCAGA
CAGTGCCTTGAATGGAGTTTCTGGTTTAAATTTCTTTGTGTCAAGTTGCA
CAGCCACCACGACTTAGAATGACAATGACGATGACAAGTTTTGGTGTTGC
ATACTGCCCACAAAACGGNTGACAATGACAATGACAATGACAATGACGAT
GACAAGTTTTGGTGTTGCATACTGCCCACAAAACGGATAGAATCACTACA
GACAAAATCTTTGACGTGATTTACGATCAGGGTGATCTCGACATAACGCC
CTCTGCcttgaaaaaaagaaacgaaaaagTGCTAAAAAGACTGGTGCTAT
AATACTTTCAAAGCTGAAACAGGTTGACAAGGACCATAAGAACGAATTTA
TCAACTCTCAGCTACCTCATGGTTATGTGCAAACAAAAATTCGGTGTTGT
GAGCCAAACTTCGCTAAAAAGCTACAAAAAGCATCAACCCAGCTTCGTGA
AAAGGATTGAGACACACCTTTGACGACGAAAATCCTGAGTCAGCCACTTT
CGAGCCGGAAAAAGAAACAGCCTTGGGGCAGACGGTTGAATTCTGTAAAA
AACTGATGATGAAATTGAAGCACAGAATCCACAATGGTGCCATTTACCAA
AAAGAGCCCAATGcaaCATTCGCCTTTTCGTACCATTGTACAATTGAAGA
CTGCTTGGAAATTTTATGTGCAAACGAAAAGAAGGGAGAGCAGATCATGC
GATTTCGAGACAAAATCAAAGCTCGCATGGAagcttcccagctggcacac
aacgttgtttcaacgttcatctaacgttatatggacgttatgaacgttag
ataaacgttgaaaaaacgttgtgtgccagctgggtgagTATGTCAAGGTA
ACGAGTTTTACCCTTAGATTGGAGATAATTTGACATATTTGGTCTTGAGC
ATTGAGTATATCAGATGATGGAAGTCACTCAACCCTGTTTCCACTGTTCC
TTTATGTTTGATAATTTTTGGTGTGTTTGTTATTATAAGATCAATACATG
ACCCTGATATTGATTTAAAACAAGTTTTGATTTAATGACGTCGTTTAATt
caagaaaattcaaaacttttggatCAGTGGGTTCAAGGTTGAAGTCacat
ataataaaaatattatcaTAATCTACTTCATAAAAATGAATAGCTTCAGA
CAGTGTTTCAAAGAATATGTCTATACTAATCCTATCTGGCcgataaatat
taaaaatgagtatttttgttttcctgAATCTAACCTCAATGGGTAAAATA
TGCAAAGATGGATCAAGCTTGAATTTAATTAGTTTACGTGCAGGGATATC
AGATTTTACATAAGTCAGTAAGCCTCCACTATTGTATTTACAATCTAGAC
GAAAAGGGGGGAAGTGATAGCCCTGCCATTTGAATTAGGAGCTAGGAAAG
AATTCGTCGATCTTTGTTTCAGCGATAGTAAATATATCAAAAGAGTTTTC
AAGCAGAATTTTCAGGTCAGAGAACTTATTTCTGATAGAGTTAATATTCA
AATAGCCCA Run BLAST on NCBI transcript from alignment at sc0002274:2842..4738+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040031 ID=TCONS_00040031|Name=TCONS_00040031|organism=Clytia hemisphaerica|type=transcript|length=1897bp|location=Sequence derived from alignment at sc0002274:2842..4738+ (Clytia hemisphaerica)
TGCATAATGTTCCAGGGAGCGGACAAAATTTACAACAACACAAAGGCAGA
CAGTGCCTTGAATGGAGTTTCTGGTTTAAATTTCTTTGTGTCAAGTTGCA
CAGCCACCACGACTTAGAATGACAATGACGATGACAAGTTTTGGTGTTGC
ATACTGCCCACAAAACGGNTGACAATGACAATGACAATGACAATGACGAT
GACAAGTTTTGGTGTTGCATACTGCCCACAAAACGGATAGAATCACTACA
GACAAAATCTTTGACGTGATTTACGATCAGGGTGATCTCGACATAACGCC
CTCTGCcttgaaaaaaagaaacgaaaaagTGCTAAAAAGACTGGTGCTAT
AATACTTTCAAAGCTGAAACAGGTTGACAAGGTAATTGTTtgtgattttc
aaaagtttgcCATCTGGAAATTCGATTAGGGAAGAGGACAGATTTGGTAG
CCTTTAAATCAGATAAAGCTTATTTTTCGTATCCTTTATTTTGCTaaatc
tttttgtttgtttgttgacTTTTTCAACATAATGAACTGAGGCTATGTTT
GCTTACTTTCATATAGGACCATAAGAACGAATTTATCAACTCTCAGCTAC
CTCATGGTTATGTGCAAACAAAAATTCGGTGTTGTGAGCCAAACTTCGCT
AAAAAGCTACAAAAAGCATCAACCCAGCTTCGTGAAAAGGATTGAGACAC
ACCTTTGACGACGAAAATCCTGAGTCAGCCACTTTCGAGCCGGAAAAAGA
AACAGCCTTGGGGCAGACGGTTGAATTCTGTAAAAAACTGATGATGAAAT
TGAAGCACAGAATCCACAATGGTGCCATTTACCAAAAAGAGCCCAATGGT
ATAAACATaataaaagtttgattttaaagTCAAGTTTTGTATCTAAAATC
AGCTATTTTAGATGATCATTCGTTTGTGATTTCTTCTTTGTTCATATCAT
TGACAAAATTTTCCTATTAATTTACGGAAGGAgtacctttttatttttaa
gcaaCATTCGCCTTTTCGTACCATTGTACAATTGAAGACTGCTTGGAAAT
TTTATGTGCAAACGAAAAGAAGGGAGAGCAGATCATGCGATTTCGAGACA
AAATCAAAGCTCGCATGGAagcttcccagctggcacacaacgttgtttca
acgttcatctaacgttatatggacgttatgaacgttagataaacgttgaa
aaaacgttgtgtgccagctgggtgagTATGTCAAGGTAACGAGTTTTACC
CTTAGATTGGAGATAATTTGACATATTTGGTCTTGAGCATTGAGTATATC
AGATGATGGAAGTCACTCAACCCTGTTTCCACTGTTCCTTTATGTTTGAT
AATTTTTGGTGTGTTTGTTATTATAAGATCAATACATGACCCTGATATTG
ATTTAAAACAAGTTTTGATTTAATGACGTCGTTTAATtcaagaaaattca
aaacttttggatCAGTGGGTTCAAGGTTGAAGTCacatataataaaaata
ttatcaTAATCTACTTCATAAAAATGAATAGCTTCAGACAGTGTTTCAAA
GAATATGTCTATACTAATCCTATCTGGCcgataaatattaaaaatgagta
tttttgttttcctgAATCTAACCTCAATGGGTAAAATATGCAAAGATGGA
TCAAGCTTGAATTTAATTAGTTTACGTGCAGGGATATCAGATTTTACATA
AGTCAGTAAGCCTCCACTATTGTATTTACAATCTAGACGAAAAGGGGGGA
AGTGATAGCCCTGCCATTTGAATTAGGAGCTAGGAAAGAATTCGTCGATC
TTTGTTTCAGCGATAGTAAATATATCAAAAGAGTTTTCAAGCAGAATTTT
CAGGTCAGAGAACTTATTTCTGATAGAGTTAATATTCAAATAGCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040031-exon-sc0002274-1491911889:2842..3222 | TCONS_00040031-exon-sc0002274-1491911889:2842..3222 | Clytia hemisphaerica | exon |
| TCONS_00040031-exon-sc0002274-1510915933:2842..3222 | TCONS_00040031-exon-sc0002274-1510915933:2842..3222 | Clytia hemisphaerica | exon |
| TCONS_00040031-exon-sc0002274-1575043694:2842..3222 | TCONS_00040031-exon-sc0002274-1575043694:2842..3222 | Clytia hemisphaerica | exon |
| TCONS_00040031-exon-sc0002274-1491911889:3408..3689 | TCONS_00040031-exon-sc0002274-1491911889:3408..3689 | Clytia hemisphaerica | exon |
| TCONS_00040031-exon-sc0002274-1510915933:3408..3689 | TCONS_00040031-exon-sc0002274-1510915933:3408..3689 | Clytia hemisphaerica | exon |
| TCONS_00040031-exon-sc0002274-1575043694:3408..3689 | TCONS_00040031-exon-sc0002274-1575043694:3408..3689 | Clytia hemisphaerica | exon |
| TCONS_00040031-exon-sc0002274-1491911889:3843..4738 | TCONS_00040031-exon-sc0002274-1491911889:3843..4738 | Clytia hemisphaerica | exon |
| TCONS_00040031-exon-sc0002274-1510915933:3843..4738 | TCONS_00040031-exon-sc0002274-1510915933:3843..4738 | Clytia hemisphaerica | exon |
| TCONS_00040031-exon-sc0002274-1575043694:3843..4738 | TCONS_00040031-exon-sc0002274-1575043694:3843..4738 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002274 | supercontig | sc0002274:2842..4738 + |
Blast
The following BLAST results are available for this feature:
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