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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL86379_cuf1 >transcript:BL86379_cuf1-protein ID=transcript:BL86379_cuf1-protein|Name=transcript:BL86379_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=383bp
MRTHTGERPYRCEECSRQFSQLNHLKRHTKTHTGERPYRCEECNKAFSTM
GEVKSHMVTHTGERPCKCEECGKWFSHQYLKKHMRTHTDEQPYQCEKCNK
MFSALGPLKLHMRTHTGEKPYKCEECGKQFSQMHSLKRHMRTHTGETPYR
CEECGRQFNTRSNLKXQFNTRSNLKTHMRTHTGEKPYQCEKCMKRFVHLD
ALKYTSGITMVRSLTNVRSVVGSSVNEATGRYTHMSTHSGVKPYQCDICT
KRFRQSSHLKVHLRTHTGERPYRCEECGKQFTTLDTLSIHARVHTGEKPY
TCEECGKQLTTLSNLKIHMRTHTGEKPYMCENCGRHCITLSSLKTHMRTH
TGEKPYKCEECSKQFTTSSHLKSHMRLHKSECL Run BLAST on NCBI mRNA from alignment at Sc0000029:1733191..1738556+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL86379_cuf1 ID=transcript:BL86379_cuf1|Name=transcript:BL86379_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5366bp|location=Sequence derived from alignment at Sc0000029:1733191..1738556+ (Branchiostoma lanceolatum)
TGCAGTGTATCTGCGCCAATCTAAAGCTGTAAGTGGACACGGCCGGATAC
AGACAACCTCTTCTGTTTCAAAGAAAGCGGATTTACCTCCTCTGGTCCGT
CGTCACCACTGCTGATTTTAAGAGGTAAAGTATGATTTTCTAGGCCTGGA
TTGCCCACATCAAATAGACAAATGGCTTTTAATTCAATAACCACTATGAT
TTCAAATGTACGAAAATGGTATATTCTGTTTACAAATATTTAATTAAGAG
CGAGGGAAGAGAGTTCGTAAGATCTTAGTAACGAGTTCTTACTGAGGTCA
GCATTGCTAAGTTCAGCGATTAAACGTTATTGTTGAAGCAAATAATTCAC
AGCTTCGTAATGTTGTCAAAAATTAGCTTCTTGTACTGTTGAACCCTGAA
AAAATGCAGAGACACCAGGTAAATGTTAAAACCTAAGGGAATGCAGAATC
TGTCGGTTTCGTTGGGGGTATAAAAACAAACTAGACGGAAATGAATTATG
GTGGACATTGTGATGTAAAAGATGCGTTGTAGATATGTACTGTATTTACC
GATATCTGAATATCCCATAGGCTGTTGGTAAGACTCACATTATTGTAGTG
GTTTATATTATCTGTCTTGTTTGCACATTTTCACAACTGTTAATTGTGTC
ACCTCGTTGATATTTTTACCTAATTTCTGCGTAATCATTTCGGCTGTTAA
CCAAATTCTGGCTTGAATTAGAATGTAAAAAAATTGTCTGCTACCTAAAA
GTCAGACAACTACCAAAGCCTTGAACTGATTCTAGTCATCAGCGCAAAAT
AACAATGCAGGTGACATTGAGCAGGCAGTTTTTAATCGTCGAACGGTATG
CAGACAACAGGGCGGGGGCAATTTTACATACCAAACACACGGACTTCGGA
TAGAATAAATATGATTTCCTTGATTTTTTAACCCTGACCAGTAAGAGGGC
AGGTGAGACGCACACGCACCATAGGGCAAACGACAACAGTATTTAGTATC
GGTAAAAAGTTGTAAACACTGTAAATTGGAGAATTAACAAGTTTTACGCC
GGTCAGTGTGTTTACACATATCGTTATTAAGTCTTGAGAAGTTATTAAGT
CTTGATCAGTTTGGTCACTTTGTGATTTTATTTAGAAACCGCTTGTACGT
TTTTCTAAGGAAGTTGGACGTTTGTCCAACTGAAATTGTCTCGTGATTAT
GTTGATGAAGTGTTGCACACTTATTTTGTTTAATCTATTTGAGTATTATG
TAGACAGGAGGGAGGGAGAATAAGATAGATCTAGAGAACTTTGGATGTAA
GAGGCCATAACAGTCAGCAAAGCTACGCCTGCCATGTTATATAACGAATG
GGGTTTATGTTGATTTTTTGTTACATTACTTATAGTGTTTGCATTTGATA
CTATCTAAAGGTCGCCGAACATTTTGACTATAAAGGGTGTCTTATCTTAG
CCTCCTTCGCAGACTTCCTAGAACGGCGGCATATGTATGGGGGGGGCGGG
GGCACACACAAGGGAGTTATGTAGCCGAGGGAGTTGTGTAGCCGAGGGGT
GACAGCCGTCCTATCAAGTCTGCTCCCGATCGGCTTGAAAAAAAGGGGAA
TTAAAAAACACTTAGGGGCTATCGACATGGACTTGTGAACTCCGGCGTCC
CATGGACCCCAATAAACCGCATGCGCCTCCTCCCGGCAGTGAGTTTTCAC
GCCCCCGAGTTCACTGATCCGGCCATTTCCTAACGGTCACCGGGGTCAAA
TCAGTTTCAAAAAATCAAAACATTTCAACTTACCACAGAAGGCAAGGATT
GTTTTGTTGGCCTGGCTAGAGGTCACGGAAAGTCAATTTGTTACCAGATA
CTACCGTCTCTTGCCAAGGAAAAGACGATGGTCCACTACAAGCTCGTCCA
CTACAAGCTCGGTTGCACACCATCAGTGCCGTCAAAGGCAAGCTTGTTTT
GTGTAGTTTATTGGGACTGTCGACCTAGCTGGCCATAGCAAATCGATTTG
TTTTCAATTTCGCAATGAAGCCAAAGATGATGTTGCATATAAGCCTAAGA
GATGTGTATTTGTATTTTAAACTTGTCTAAAGTGGCGACCTCACATCTCC
CCTCCCCATTTCTGCCGGTTCCGGACTATAGATATAAAAAAATCGACAAA
ACTGTCCGACTGCCTTCAATAGAATAAATTACCACATTGATTCAAGAGAT
AGTTTTAGTTTAGCGGCGGTCACCCCTCGGCTACACAACTCCCTCGGCTA
CACAACTCCCTCGGCTACATAACTCCCTTGTGTGCCCCCCCCCCCACCAA
TACAAATGCCGCCGTTATAGGAAGTATGCGAAGGAGGCTAGTCTTATCTT
ATGCTTTTAGTGTAGGTTGATAAACGTTTTATAATTAGCCAGATCCGCGG
ATGTAATAGTTAAGAACCAAGTACATTCTTCCCTTTTTTTAAATAATTAC
TTGCATGATTTCTGCAGAATCGAAGGGTTGGTGAACATGGAAACCACAGC
TGACCTGACAACGGCCAAGGAAAATCATGGACATGGAAACAATTCACCGC
GTACCCACAAGTGCAGCGAGTGCCACAAGGAGTTTCGTCAGCAGAGTTAA
CTGACGATACACATGAGGACTCACACTGGTGAGAGACCTTACAGGTGTGA
GGAGTGCAGCAGGCAGTTCAGTCAACTGAATCATCTGAAGAGGCACACCA
AAACTCACACTGGCGAAAGACCGTACAGATGTGAGGAGTGTAACAAAGCG
TTTAGTACAATGGGTGAAGTAAAATCACACATGGTGACTCACACTGGCGA
AAGGCCGTGTAAATGTGAGGAGTGCCTCTGTGAAAAAAGAAGCCGTCTAA
AATGTTTGGACGCCGTCTAAGAGCGTTTTAGCGCGTCGGAGCCCGTCCCA
GGCCGTCTGTCCTGTCAGAAACGGCGGCGGATACGTCGCGCGCGTTCAGG
CCGTCCTGCCCGTCTGTTAGTTGGACGCCGGGGCGGCCTTCCTGGCCGCT
GGAAACGTCAGAAACAGCGTCGGAGGGGGCTATAAAATAATTATTCACCC
GACGCTTCCGCCTGTCGTCATCTCTAACGTGTGAAAAGCACGTTTTTCAG
CTTCTGCACATGCGCAAATTTGAGCGGTAGTTTCGATTTGACCGTTAACT
GTTACAGACCATTTGTTCAGTCAGTGCTCGTTTTGCTGTATTTTTTGGCC
CATTTCTTGGATTTCGTGCACTTTTGGAGGATGCAATTTACTTTTAAAAG
CAGCTGTATCTTTAATTAAGCTAAGATATAGTTTAATATAGTTTAATTTA
GCTTCCAGTCTGAGGCCATGGCGGCCGTGGGTGGTCTACTACGCCAGTCT
GGCTGCATATTGGCTATTTTGTTGCCCCAAGCGGCCATAAAAATCAAAAC
CATGTCCGGACGCCGTCAGAAACCGCGTCTCAAAACGGAGCAAGCATGCG
CACAGCAGCTCGGATTAGCACCGGAAAATTGACGCCGTTTGCGCCCGTCC
CTGGAGGGCCCACGCGGACGCGGTCCAGGACGTCTGGGACGTTTTCTACG
ACGTCAACGACGCCGTCAAATGAGCCAATCTAGACGCGTCCGCGTCAGAA
ACGACGTTTGCGCCCGTCCCCGGCGTCGTTCGGCGCCCATCCCTAGCGTC
CCCGGGCGGCGCCTGCAACCTGGCGGGGGGCCCGCGCGGACGCCGTCCAA
GACGTCTGGGACGTTTTCTATACGGCGTCAACGACGCCGTCAAATGAGCC
AATCTAGACGCGTCCGGCGTTTTTCAGGCCGTTCAGACCGTCCGAGACGT
GTCATCAAGGGTTTTACAACCCGTCCAAGTTGGTCTGCAGTCATAATTCA
GGACTCATCGAATTTCAGTGGACGCCCGTCACAGACGGCGTTCGGCCGTT
TGGGACGGTTTCATTTTCACAGAGGTGCGGCAAGTGGTTTAGTCACCAAT
ATCTGAAAAAGCACATGCGCACTCACACTGATGAACAACCATACCAATGT
GAGAAGTGCAACAAAATGTTCAGTGCACTGGGTCCCCTTAAGCTGCACAT
GAGAACTCACACTGGTGAGAAACCGTACAAGTGTGAGGAGTGCGGTAAGC
AGTTCAGCCAGATGCATAGTCTAAAAAGACACATGCGCACTCACACGGGC
GAGACGCCGTACAGATGTGAGGAATGTGGCAGACAATTCAACACGCGATC
CAATCTGAAGANACAATTCAACACGCGATCCAACCTGAAGACACATATGA
GGACTCACACTGGTGAAAAACCGTACCAGTGTGAGAAATGCATGAAACGC
TTTGTTCACCTCGATGCCCTAAAATACACATCAGGAATCACAATGGTGAG
AAGCCTTACAAATGTAAGGAGTGTAGTAGGCAGTTCAGTCAACGAAGCCA
CTGGAAGATATACGCATATGTCGACTCATTCAGGCGTGAAACCGTACCAG
TGTGACATATGCACAAAGCGTTTCCGTCAATCCAGTCACCTGAAGGTTCA
CTTGCGGACTCACACCGGTGAGAGACCCTACAGATGTGAAGAGTGCGGAA
AGCAGTTCACAACCCTGGATACTCTTAGTATACACGCACGGGTTCACACC
GGTGAGAAACCGTACACGTGTGAGGAATGTGGCAAGCAGCTTACTACGTT
GTCTAATCTAAAGATACACATGCGCACTCACACGGGTGAGAAACCTTACA
TGTGTGAGAATTGTGGCCGACATTGCATTACGCTGTCAAGCCTAAAGACG
CATATGCGCACTCATACGGGCGAGAAACCGTACAAGTGTGAGGAATGTAG
CAAACAGTTCACCACGTCGTCCCATCTTAAGTCACATATGCGCCTTCACA
AAAGTGAATGTCTGTGAATACTGACATGGGGATTATATTCCGGTCATCTG
GAGACAACTACATGACAAAGGGAAAGCTTAGACCCAAAATCTGAAAATGT
TGGACTTTTGGTATAACAACAACAACAGCAACAACAAAAAATTAAGCAAA
GGAGTCGGAGAGCAATAAAGTTGCCTGTCCAAATTTCCAGAAATGTTTTT
TTGTCAGGAAACATAAATACTAGCTTGAGCCATTTTGGGCCATGACTCAT
AAGTCACGTAACATAGTAACCAAGTACGTAGCATGGAGAAAAGACATTTA
AGGACAATGGTGGTAGCTACAGATAAAACTGTAATGATATGGAGAAACAA
TTAGTGTGTCATGGTAAAACAGAGAAAGACTAGGTTTTCTAACTGTCTAT
TTTCCCCTCCCATTATTTTCCCCTCCTTTTTGCTTGCGGGTAACGATAGT
AGAAAGGGAGGCCAGGGTGTTTCTTTTTTAATGTAAACACAAGTTGGACA
CAGGATGACAGTTCAT Coding sequence (CDS) from alignment at Sc0000029:1733191..1738556+ >transcript:BL86379_cuf1 ID=transcript:BL86379_cuf1|Name=transcript:BL86379_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2304bp|location=Sequence derived from alignment at Sc0000029:1733191..1738556+ (Branchiostoma lanceolatum)
ATGAGGACTCACACTGGTGAGAGACCTTACAGGTGTGAGGAGTGCAGCAG
GCAGTTCAGTCAACTGAATCATCTGAAGAGGCACACCAAAACTCACACTG
GCGAAAGACCGTACAGATGTGAGGAGTGTAACAAAGCGTTTAGTACAATG
GGTGAAGTAAAATCACACATGGTGACTCACACTGGCGAAAGGCCGTGTAA
ATGTGAGGAGTGCGGCAAGTGGTTTAGTCACCAATATCTGAAAAAGCACA
TGCGCACTCACACTGATGAACAACCATACCAATGTGAGAAGTGCAACAAA
ATGTTCAGTGCACTGGGTCCCCTTAAGCTGCACATGAGAACTCACACTGG
TGAGAAACCGTACAAGTGTGAGGAGTGCGGTAAGCAGTTCAGCCAGATGC
ATAGTCTAAAAAGACACATGCGCACTCACACGGGCGAGACGCCGTACAGA
TGTGAGGAATGTGGCAGACAATTCAACACGCGATCCAATCTGAAGANACA
ATTCAACACGCGATCCAACCTGAAGACACATATGAGGACTCACACTGGTG
AAAAACCGTACCAGTGTGAGAAATGCATGAAACGCTTTGTTCACCTCGAT
GCCCTAAAATACACATCAGGAATCACAATGGTGAGAAGCCTTACAAATGT
AAGGAGTGTAGTAGGCAGTTCAGTCAACGAAGCCACTGGAAGATATACGC
ATATGTCGACTCATTCAGGCGTGAAACCGTACCAGTGTGACATATGCACA
AAGCGTTTCCGTCAATCCAGTCACCTGAAGGTTCACTTGCGGACTCACAC
CGGTGAGAGACCCTACAGATGTGAAGAGTGCGGAAAGCAGTTCACAACCC
TGGATACTCTTAGTATACACGCACGGGTTCACACCGGTGAGAAACCGTAC
ACGTGTGAGGAATGTGGCAAGCAGCTTACTACGTTGTCTAATCTAAAGAT
ACACATGCGCACTCACACGGGTGAGAAACCTTACATGTGTGAGAATTGTG
GCCGACATTGCATTACGCTGTCAAGCCTAAAGACGCATATGCGCACTCAT
ACGGGCGAGAAACCGTACAAGTGTGAGGAATGTAGCAAACAGTTCACCAC
GTCGTCCCATCTTAAGTCACATATGCGCCTTCACAAAAGTGAATGTCTGT
GAATGAGGACTCACACTGGTGAGAGACCTTACAGGTGTGAGGAGTGCAGC
AGGCAGTTCAGTCAACTGAATCATCTGAAGAGGCACACCAAAACTCACAC
TGGCGAAAGACCGTACAGATGTGAGGAGTGTAACAAAGCGTTTAGTACAA
TGGGTGAAGTAAAATCACACATGGTGACTCACACTGGCGAAAGGCCGTGT
AAATGTGAGGAGTGCGGCAAGTGGTTTAGTCACCAATATCTGAAAAAGCA
CATGCGCACTCACACTGATGAACAACCATACCAATGTGAGAAGTGCAACA
AAATGTTCAGTGCACTGGGTCCCCTTAAGCTGCACATGAGAACTCACACT
GGTGAGAAACCGTACAAGTGTGAGGAGTGCGGTAAGCAGTTCAGCCAGAT
GCATAGTCTAAAAAGACACATGCGCACTCACACGGGCGAGACGCCGTACA
GATGTGAGGAATGTGGCAGACAATTCAACACGCGATCCAATCTGAAGANA
CAATTCAACACGCGATCCAACCTGAAGACACATATGAGGACTCACACTGG
TGAAAAACCGTACCAGTGTGAGAAATGCATGAAACGCTTTGTTCACCTCG
ATGCCCTAAAATACACATCAGGAATCACAATGGTGAGAAGCCTTACAAAT
GTAAGGAGTGTAGTAGGCAGTTCAGTCAACGAAGCCACTGGAAGATATAC
GCATATGTCGACTCATTCAGGCGTGAAACCGTACCAGTGTGACATATGCA
CAAAGCGTTTCCGTCAATCCAGTCACCTGAAGGTTCACTTGCGGACTCAC
ACCGGTGAGAGACCCTACAGATGTGAAGAGTGCGGAAAGCAGTTCACAAC
CCTGGATACTCTTAGTATACACGCACGGGTTCACACCGGTGAGAAACCGT
ACACGTGTGAGGAATGTGGCAAGCAGCTTACTACGTTGTCTAATCTAAAG
ATACACATGCGCACTCACACGGGTGAGAAACCTTACATGTGTGAGAATTG
TGGCCGACATTGCATTACGCTGTCAAGCCTAAAGACGCATATGCGCACTC
ATACGGGCGAGAAACCGTACAAGTGTGAGGAATGTAGCAAACAGTTCACC
ACGTCGTCCCATCTTAAGTCACATATGCGCCTTCACAAAAGTGAATGTCT
GTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000029 | genome | Sc0000029:1733191..1738556 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL86379_cuf1 |
| Biotype | protein_coding |
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