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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039572 ID=TCONS_00039572|Name=TCONS_00039572|organism=Clytia hemisphaerica|type=transcript|length=1887bpRun BLAST on NCBI transcript from alignment at sc0002143:13702..27799+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039572 ID=TCONS_00039572|Name=TCONS_00039572|organism=Clytia hemisphaerica|type=transcript|length=14098bp|location=Sequence derived from alignment at sc0002143:13702..27799+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00039572 vs. Swiss-Prot (Human)
Match: ZNF84 (Zinc finger protein 84 OS=Homo sapiens GN=ZNF84 PE=1 SV=2) HSP 1 Score: 188.734 bits (478), Expect = 5.719e-58 Identity = 111/233 (47.64%), Postives = 143/233 (61.37%), Query Frame = 1
Query: 679 KVHEGINPFECQECAKSFATKSCLVRHQRTIHEGIKAFECQECAKYFATKSCLVSHQRTVHQGLKAFKCHECGLFFGRKYDLVRHHRIFHEGIKAFECKECGECFVEKRNLTSHQLTIHEGINPFVCEECAKSFATKSCLVRHQRTIHEGIRPFKCQECGKCFAEKRQSTSHHRFVHEGIKPY*CQECGKCFATNSYLKRHKLLVHDEIKDFECQECGKCFATKSYLKRHRLT 1377
+ H G P+ C +C K+F+ KS L HQRT H G K +EC EC K F+ KS L+SH RT H G K + C+ECG F K +L+ H RI H G K FEC+ECG+ F K L +H T H G PF C +C K+F KS L+RHQ TIH G +P++C EC K F E R S +H+ H G KP+ C +CGK F+ S+L H+ + H K F C +CGK F+ KS L RH+ T
Sbjct: 255 RTHTGEKPYNCSQCGKAFSQKSQLTSHQRT-HTGEKPYECGECGKAFSRKSHLISHWRT-HTGEKPYGCNECGRAFSEKSNLINHQRI-HTGEKPFECRECGKAFSRKSQLVTHHRT-HTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRE-RSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQ-MTHTGEKPFICSKCGKAFSRKSQLVRHQRT 480 HSP 2 Score: 55.8398 bits (133), Expect = 5.719e-58 Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 3
Query: 1392 KAFECQECGKSFGEKSNLTMHQRTVHLD*KAFKCQ*SKLNLLLQRFIFKNPKELSMIKPFECQNYGNSFAEKGSL*KHQRKAHDKI*PFQC 1664
K +EC ECGK+F EK +LT HQR +H K + C + + + + + KP+EC G +F EK SL HQR H P++C
Sbjct: 485 KPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQRTHTGEKPYECSECGKAFGEKSSLATHQR-THTGEKPYEC 573 HSP 3 Score: 187.193 bits (474), Expect = 1.014e-56 Identity = 113/241 (46.89%), Postives = 144/241 (59.75%), Query Frame = 1
Query: 667 SHQLKVHEGINPFECQECAKSFATKSCLVRHQRTIHEGIKAFECQECAKYFATKSCLVSHQRTVHQGLKAFKCHECGLFFGRKYDLVRHHRIFHEGIKAFECKECGECFVEKRNLTSHQLTIHEGINPFVCEECAKSFATKSCLVRHQRTIHEGIRPFKCQECGKCFAEKRQSTSHHRFVHEGIKPY*CQECGKCFATNSYLKRHKLLVHDEIKDFECQECGKCFATKSYLKRHRLTVHDG 1389
SHQ + H G P+EC EC K+F+ KS L+ H RT H G K + C EC + F+ KS L++HQR +H G K F+C ECG F RK LV HHR H G K F C +C + F EK L HQ TIH G P+ C EC K+F +S L+ HQRT H G +P C +CGK F++K S H+ H G KP+ C +CGK F+ S L RH+ H K +EC ECGK F+ K L H+ +H G
Sbjct: 280 SHQ-RTHTGEKPYECGECGKAFSRKSHLISHWRT-HTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHRT-HTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRT-HTGEKPHGCIQCGKAFSQKSHLIS-HQMTHTGEKPFICSKCGKAFSRKSQLVRHQ-RTHTGEKPYECSECGKAFSEKLSLTNHQ-RIHTG 511 HSP 4 Score: 52.7582 bits (125), Expect = 1.014e-56 Identity = 43/119 (36.13%), Postives = 55/119 (46.22%), Query Frame = 3
Query: 1392 KAFECQECGKSFGEKSNLTMHQRTVHLD*KAFKC--------Q*SKLNLLLQRFIFKNPKELSMI--------------------KPFECQNYGNSFAEKGSL*KHQRKAHDKI*PFQC 1664
K +EC ECGK+FGEKS+L HQRT H K ++C Q S+LN + + P E S+ KP+EC +F EK SL HQR H PF+C
Sbjct: 541 KPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQRIHTGEKPYECSLCRKAFFEKSELIRHLRTHTGEKPYECNECRKAFREKSSLINHQR-IHTGEKPFEC 657 HSP 5 Score: 192.2 bits (487), Expect = 4.362e-52 Identity = 113/233 (48.50%), Postives = 144/233 (61.80%), Query Frame = 1
Query: 679 KVHEGINPFECQECAKSFATKSCLVRHQRTIHEGIKAFECQECAKYFATKSCLVSHQRTVHQGLKAFKCHECGLFFGRKYDLVRHHRIFHEGIKAFECKECGECFVEKRNLTSHQLTIHEGINPFVCEECAKSFATKSCLVRHQRTIHEGIRPFKCQECGKCFAEKRQSTSHHRFVHEGIKPY*CQECGKCFATNSYLKRHKLLVHDEIKDFECQECGKCFATKSYLKRHRLT 1377
++H G PFEC+EC K+F+ KS LV H RT H G K F C +C K F KS L+ HQ T+H G K ++C EC F + L+ H R H G K C +CG+ F +K +L SHQ+T H G PF+C +C K+F+ KS LVRHQRT H G +P++C ECGK F+EK T+H R +H G KPY C ECGK F S+L H+ H K +EC ECGK F KS L H+ T
Sbjct: 339 RIHTGEKPFECRECGKAFSRKSQLVTHHRT-HTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRT-HTGEKPHGCIQCGKAFSQKSHLISHQMT-HTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQ-RTHTGEKPYECSECGKAFGEKSSLATHQRT 564 HSP 6 Score: 181.415 bits (459), Expect = 1.246e-48 Identity = 114/237 (48.10%), Postives = 142/237 (59.92%), Query Frame = 1
Query: 667 SHQLKVHEGINPFECQECAKSFATKSCLVRHQRTIHEGIKAFECQECAKYFATKSCLVSHQRTVHQGLKAFKCHECGLFFGRKYDLVRHHRIFHEGIKAFECKECGECFVEKRNLTSHQLTIHEGINPFVCEECAKSFATKSCLVRHQRTIHEGIRPFKCQECGKCFAEKRQSTSHHRFVHEGIKPY*CQECGKCFATNSYLKRHKLLVHDEIKDFECQECGKCFATKSYLKRHRLT 1377
SHQ+ H G PF C +C K+F+ KS LVRHQRT H G K +EC EC K F+ K L +HQR +H G K + C ECG F +K L+ H R H G K +EC ECG+ F EK +L +HQ T H G P+ C +C K+F+ KS L HQR IH G +P++C C K F EK + H R H G KPY C EC K F S L H+ +H K FEC ECGK F+ KS+L H+ T
Sbjct: 448 SHQM-THTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEKPYECSLCRKAFFEKSELIRHLR-THTGEKPYECNECRKAFREKSSLINHQR-IHTGEKPFECSECGKAFSRKSHLIPHQRT 676 HSP 7 Score: 31.9574 bits (71), Expect = 1.246e-48 Identity = 15/34 (44.12%), Postives = 21/34 (61.76%), Query Frame = 3
Query: 1392 KAFECQECGKSFGEKSNLTMHQRTVHLD*KAFKC 1493
K + C EC K+F +KS L HQR +H K ++C
Sbjct: 681 KPYGCSECRKAFSQKSQLVNHQR-IHTGEKPYRC 713 HSP 8 Score: 177.563 bits (449), Expect = 2.948e-47 Identity = 108/233 (46.35%), Postives = 133/233 (57.08%), Query Frame = 1
Query: 679 KVHEGINPFECQECAKSFATKSCLVRHQRTIHEGIKAFECQECAKYFATKSCLVSHQRTVHQGLKAFKCHECGLFFGRKYDLVRHHRIFHEGIKAFECKECGECFVEKRNLTSHQLTIHEGINPFVCEECAKSFATKSCLVRHQRTIHEGIRPFKCQECGKCFAEKRQSTSHHRFVHEGIKPY*CQECGKCFATNSYLKRHKLLVHDEIKDFECQECGKCFATKSYLKRHRLT 1377
++H G P+ C EC K+F KS L+ HQRT H G K +EC EC K F KS L +HQRT H G K ++C +C F +K L H RI H G K +EC C + F EK L H L H G P+ C EC K+F KS L+ HQR IH G +PF+C ECGK F+ K H R H G KPY C EC K F+ S L H+ +H K + C ECGK F+ KS L H+ T
Sbjct: 507 RIHTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQRI-HTGEKPYECSLCRKAFFEKSELIRH-LRTHTGEKPYECNECRKAFREKSSLINHQR-IHTGEKPFECSECGKAFSRKSHLIPHQR-THTGEKPYGCSECRKAFSQKSQLVNHQR-IHTGEKPYRCIECGKAFSQKSQLINHQRT 732 HSP 9 Score: 167.162 bits (422), Expect = 7.948e-44 Identity = 100/206 (48.54%), Postives = 128/206 (62.14%), Query Frame = 1
Query: 667 SHQLKVHEGINPFECQECAKSFATKSCLVRHQRTIHEGIKAFECQECAKYFATKSCLVSHQRTVHQGLKAFKCHECGLFFGRKYDLVRHHRIFHEGIKAFECKECGECFVEKRNLTSHQLTIHEGINPFVCEECAKSFATKSCLVRHQRTIHEGIRPFKCQECGKCFAEKRQSTSHHRFVHEGIKPY*CQECGKCFATNSYLKRHK 1284
SHQ + H G P+EC EC K+F KS L HQRT H G K +EC++C K F+ KS L +HQR +H G K ++C C F K +L+RH R H G K +EC EC + F EK +L +HQ IH G PF C EC K+F+ KS L+ HQRT H G +P+ C EC K F++K Q +H R +H G KPY C ECGK F+ S L H+
Sbjct: 532 SHQ-RTHTGEKPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEKPYECSLCRKAFFEKSELIRHLRT-HTGEKPYECNECRKAFREKSSLINHQ-RIHTGEKPFECSECGKAFSRKSHLIPHQRT-HTGEKPYGCSECRKAFSQKSQLVNHQR-IHTGEKPYRCIECGKAFSQKSQLINHQ 730 HSP 10 Score: 166.392 bits (420), Expect = 1.783e-43 Identity = 101/229 (44.10%), Postives = 131/229 (57.21%), Query Frame = 1
Query: 691 GINPFECQECAKSFATKSCLVRHQRTIHEGIKAFECQECAKYFATKSCLVSHQRTVHQGLKAFKCHECGLFFGRKYDLVRHHRIFHEGIKAFECKECGECFVEKRNLTSHQLTIHEGINPFVCEECAKSFATKSCLVRHQRTIHEGIRPFKCQECGKCFAEKRQSTSHHRFVHEGIKPY*CQECGKCFATNSYLKRHKLLVHDEIKDFECQECGKCFATKSYLKRHRLT 1377
G +EC EC K F+ K L++HQ + H AF C C K F KS ++H RT H G K + C +CG F +K L H R H G K +EC ECG+ F K +L SH T H G P+ C EC ++F+ KS L+ HQR IH G +PF+C+ECGK F+ K Q +HHR H G KP+ C +C K F S L RH+ +H K +EC EC K F +S L H+ T
Sbjct: 203 GEKLYECSECRKRFSKKPSLIKHQ-SRHIRDIAFGCGNCGKTFPQKSQFITHHRT-HTGEKPYNCSQCGKAFSQKSQLTSHQRT-HTGEKPYECGECGKAFSRKSHLISHWRT-HTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHR-THTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRT 424 HSP 11 Score: 153.295 bits (386), Expect = 4.820e-39 Identity = 101/267 (37.83%), Postives = 141/267 (52.81%), Query Frame = 1
Query: 589 IPRNFFNRRASMVTIAYFSCFFIPPCSHQLKVHEGINPFECQECAKSFATKSCLVRHQRTIHEGIKAFECQECAKYFATKSCLVSHQRTVHQGLKAFKCHECGLFFGRKYDLVRHHRIFHEGIKAFECKECGECFVEKRNLTSHQLTIHEGINPFVCEECAKSFATKSCLVRHQRTIHEGIRPFKCQECGKCFAEKRQSTSHHRFVHEGIKPY*CQECGKCFATNSYLKRHKLLVHDEIKDFECQECGKCFATKSYLKRHRLTVHDG 1389
IP+ + + A F FF+ S + ++C + +S+ ++ H+ + G K +EC EC K F+ K L+ HQ + H AF C CG F +K + HHR H G K + C +CG+ F +K LTSHQ T H G P+ C EC K+F+ KS L+ H RT H G +P+ C ECG+ F+EK +H R +H G KP+ C+ECGK F+ S L H H K F C +C K F KS L RH+ T+H G
Sbjct: 145 IPKGDYGK-AESDDFNVFDNFFLH--SKPEDTDTWLKYYDCDKYKESYKKSQIIIYHRNRL--GEKLYECSECRKRFSKKPSLIKHQ-SRHIRDIAFGCGNCGKTFPQKSQFITHHRT-HTGEKPYNCSQCGKAFSQKSQLTSHQRT-HTGEKPYECGECGKAFSRKSHLISHWRT-HTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHH-RTHTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTG 399 HSP 12 Score: 145.591 bits (366), Expect = 2.057e-36 Identity = 87/179 (48.60%), Postives = 111/179 (62.01%), Query Frame = 1
Query: 664 CSHQLKVHEGINPFECQECAKSFATKSCLVRHQRTIHEGIKAFECQECAKYFATKSCLVSHQRTVHQGLKAFKCHECGLFFGRKYDLVRHHRIFHEGIKAFECKECGECFVEKRNLTSHQLTIHEGINPFVCEECAKSFATKSCLVRHQRTIHEGIRPFKCQECGKCFAEKRQSTSHHR 1200
+HQ + H G P+EC++C K+F+ KS L HQR IH G K +EC C K F KS L+ H RT H G K ++C+EC F K L+ H RI H G K FEC ECG+ F K +L HQ T H G P+ C EC K+F+ KS LV HQR IH G +P++C ECGK F++K Q +H R
Sbjct: 559 ATHQ-RTHTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEKPYECSLCRKAFFEKSELIRHLRT-HTGEKPYECNECRKAFREKSSLINHQRI-HTGEKPFECSECGKAFSRKSHLIPHQRT-HTGEKPYGCSECRKAFSQKSQLVNHQR-IHTGEKPYRCIECGKAFSQKSQLINHQR 731 HSP 13 Score: 106.686 bits (265), Expect = 6.429e-24 Identity = 60/118 (50.85%), Postives = 72/118 (61.02%), Query Frame = 1
Query: 676 LKVHEGINPFECQECAKSFATKSCLVRHQRTIHEGIKAFECQECAKYFATKSCLVSHQRTVHQGLKAFKCHECGLFFGRKYDLVRHHRIFHEGIKAFECKECGECFVEKRNLTSHQLT 1029
L+ H G P+EC EC K+F KS L+ HQR IH G K FEC EC K F+ KS L+ HQRT H G K + C EC F +K LV H RI H G K + C ECG+ F +K L +HQ T
Sbjct: 618 LRTHTGEKPYECNECRKAFREKSSLINHQR-IHTGEKPFECSECGKAFSRKSHLIPHQRT-HTGEKPYGCSECRKAFSQKSQLVNHQRI-HTGEKPYRCIECGKAFSQKSQLINHQRT 732 HSP 14 Score: 85.8853 bits (211), Expect = 2.150e-17 Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 3
Query: 66 SSIKEHQRT-LHDKPFKCQECGKSFATKGNLVRHQRTVHEGIKAFECHECSLFFGRKYDLVRHHRIVHEGIKAFECQECGKCFVEKRNLTSHHR 344
S + HQRT +KP++C ECGK+F+ K +L+ H RT H G K + C+EC F K +L+ H RI H G K FEC+ECGK F K L +HHR
Sbjct: 276 SQLTSHQRTHTGEKPYECGECGKAFSRKSHLISHWRT-HTGEKPYGCNECGRAFSEKSNLINHQRI-HTGEKPFECRECGKAFSRKSQLVTHHR 367 HSP 15 Score: 82.8037 bits (203), Expect = 2.242e-16 Identity = 48/94 (51.06%), Postives = 59/94 (62.77%), Query Frame = 3
Query: 66 SSIKEHQRT-LHDKPFKCQECGKSFATKGNLVRHQRTVHEGIKAFECHECSLFFGRKYDLVRHHRIVHEGIKAFECQECGKCFVEKRNLTSHHR 344
SS+ HQRT +KP C +CGK+F+ K +L+ HQ T H G K F C +C F RK LVRH R H G K +EC ECGK F EK +LT+H R
Sbjct: 416 SSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMT-HTGEKPFICSKCGKAFSRKSQLVRHQR-THTGEKPYECSECGKAFSEKLSLTNHQR 507 The following BLAST results are available for this feature:
BLAST of TCONS_00039572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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