TCONS_00039547 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039547
Unique NameTCONS_00039547
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039547 ID=TCONS_00039547|Name=TCONS_00039547|organism=Clytia hemisphaerica|type=transcript|length=328bp
NNGAGTTTGATGTAATGAAGATGTCGGTATTCTTGTTGGTGTATCCGAGC
AGGTGAAGGTCAGGATTGACATGATATCCCAACTTAAACAGCTCGTGTTG
ATCATTGATGAATTTATTGGTGTTGAAATGGTGATCTTTGATGTTGTTGA
AGACAGGGTGTGTACCACCAATAACGCCGGTTGATCCGTCTGGACTTTAT
CTGTAAATTGTCAGTCCTGATGGCATCTTGAATACCTCCTCCGGGAAGTA
TCTTGAATATTTGATGCCAATCATAAAATCTGTATGACCACAAACTTGTT
TTGGGACCAGAGGAAGATTGCATGGATC
Run BLAST on NCBI

transcript from alignment at sc0002139:21531..21858

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039547 ID=TCONS_00039547|Name=TCONS_00039547|organism=Clytia hemisphaerica|type=transcript|length=328bp|location=Sequence derived from alignment at sc0002139:21531..21858 (Clytia hemisphaerica)
GATCCATGCAATCTTCCTCTGGTCCCAAAACAAGTTTGTGGTCATACAGA
TTTTATGATTGGCATCAAATATTCAAGATACTTCCCGGAGGAGGTATTCA
AGATGCCATCAGGACTGACAATTTACAGATAAAGTCCAGACGGATCAACC
GGCGTTATTGGTGGTACACACCCTGTCTTCAACAACATCAAAGATCACCA
TTTCAACACCAATAAATTCATCAATGATCAACACGAGCTGTTTAAGTTGG
GATATCATGTCAATCCTGACCTTCACCTGCTCGGATACACCAACAAGAAT
ACCGACATCTTCATTACATCAAACTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023887XLOC_023887Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039547-exon-sc0002139-1491911889:21531..21858TCONS_00039547-exon-sc0002139-1491911889:21531..21858Clytia hemisphaericaexon
TCONS_00039547-exon-sc0002139-1510915933:21531..21858TCONS_00039547-exon-sc0002139-1510915933:21531..21858Clytia hemisphaericaexon
TCONS_00039547-exon-sc0002139-1575043694:21531..21858TCONS_00039547-exon-sc0002139-1575043694:21531..21858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002139supercontigsc0002139:21531..21858 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.71349	0.802299	0.802694	0	2.54214	0.635381	2.84674	1.07647	0.25122	1.25048	1.93592	0.397093	0.405696	0.576469	0.26793	0	0	0.0323663	1.58454	0	0	0	0.797195	0.484243	0.352309	2.16699	0.817563	0.247356	0	0.337125
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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