TCONS_00039479 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039479
Unique NameTCONS_00039479
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039479 ID=TCONS_00039479|Name=TCONS_00039479|organism=Clytia hemisphaerica|type=transcript|length=412bp
attttttaagtAAGGTTACATATTTTTCAAGTCAATGGGATAAAGAAAAG
TATCTTAGGTACTTTCGTTAAATATTTTGACTGATACTTTTGCGTTTTGG
AGACAATGTTTTAACGCTATGCTAAAGATGACAATTACCAAGCCTGACCA
AGCAGGGTCTAAAATATCAGCTAAAAAgccattttaattgttttcaatgT
ATCATCTTACTGTATCAGGcaatttaatatatttttagtCACTCTGATAT
ATGTACGACTCAAATCATTGTTTTCTAACTCCAATAGGAAGCTAGCTTTT
GAAGGTGACCTTGGAACAACTTGTTACAGAAATAGAGAAAGTAAGCTGAA
GATGAAAGTAAGCTGAAGATGAAAACAAttcaataaaagtgatcttagaa
attCACTctaaa
Run BLAST on NCBI

transcript from alignment at sc0002119:9223..9634

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039479 ID=TCONS_00039479|Name=TCONS_00039479|organism=Clytia hemisphaerica|type=transcript|length=412bp|location=Sequence derived from alignment at sc0002119:9223..9634 (Clytia hemisphaerica)
tttagAGTGaatttctaagatcacttttattgaaTTGTTTTCATCTTCAG
CTTACTTTCATCTTCAGCTTACTTTCTCTATTTCTGTAACAAGTTGTTCC
AAGGTCACCTTCAAAAGCTAGCTTCCTATTGGAGTTAGAAAACAATGATT
TGAGTCGTACATATATCAGAGTGactaaaaatatattaaattgCCTGATA
CAGTAAGATGATAcattgaaaacaattaaaatggcTTTTTAGCTGATATT
TTAGACCCTGCTTGGTCAGGCTTGGTAATTGTCATCTTTAGCATAGCGTT
AAAACATTGTCTCCAAAACGCAAAAGTATCAGTCAAAATATTTAACGAAA
GTACCTAAGATACTTTTCTTTATCCCATTGACTTGAAAAATATGTAACCT
Tacttaaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023831XLOC_023831Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039479-exon-sc0002119-1491911889:9223..9634TCONS_00039479-exon-sc0002119-1491911889:9223..9634Clytia hemisphaericaexon
TCONS_00039479-exon-sc0002119-1510915933:9223..9634TCONS_00039479-exon-sc0002119-1510915933:9223..9634Clytia hemisphaericaexon
TCONS_00039479-exon-sc0002119-1575043694:9223..9634TCONS_00039479-exon-sc0002119-1575043694:9223..9634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002119supercontigsc0002119:9223..9634 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.174767	0.170426	1.18728	1.54876	0	0.18624	0	0	0	0.364843	0.531188	0.116394	0	0	0	0	0	0.134473	0	0	0	0	0	0	0	0	0.239641	0	0.193978	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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