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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039437 ID=TCONS_00039437|Name=TCONS_00039437|organism=Clytia hemisphaerica|type=transcript|length=2414bp
TTGTGACATTTCAGACCTATGTTACAAAATTAGCCTATATTTTTCTAACA
GAATTTGATCCTTCTCAAAGAATAACATGATGGTTAGCTCATTAGATTTC
TGTTGGCAAATTATGTAACAGCAATTTCCAAAGTTTAGTATATCTCAAGT
TATGATAATTTGAATCTTGCCAGAATTCTGGCTAATGATGTAACAttgca
attttctaaaaagctGGCTAATGACTCTAAAACAGCTATTAGGCAATATT
CACATAAAAATGGTACATTGGCATCATTAGGGGGTTGAAGGGGATTCTAT
TGGCAATGCATTCGGGTTAAAAAGTTGATCGGCTAATGGTGTAACAAGGC
TGAGATGTCCCAATGTGCTGTTCCATTTAAGCCAGATTTTGTTGACATAA
CAACAAATCCTTAGTCAAAAGGCAATAGATTGTTTACTTCATGCATTGGT
TGAGACAATATCATGACTTTGCTAATAAATAATAGGACAAACTGGCTAAT
GTCGTAACATTCAATCCTTTAACTCTAAAAATGGTCCCTTTTCAGGCCCA
TTGATAGTAGTATTATTAAATTGGCTGGTATTCATACTTAAGTCTAAGTT
ACATGCttcatatttgaaaaatatgcgTCTCAATGACATATTATTCACTT
GGTGAACCTTCCAAAAGCCTTTATTTCCATTAATCAGCCTAAATTGGCTA
AATTTGTAACAAAATTGGGAAGAAATATCCAATTTTGTTACAGATTAGCC
GTTTCTGGGGAATGAACAAGCGGTTTCAGCATTATCAATATGATTCATGT
TTCAATCAACCTTTTGTAATACTTATTTCAATATCACTTTGCAATAAGAG
ATGTAACAGAAGTCATACTTGCCGAAGCTTGGCTGGTAGTGTAACATGGG
GGTAACATGACATTTTCATTGAATTGAAGGAATACTTTAGTTATGAATTG
ACTGTTTACTCCTAATGAAAGATCCAGTTAAATCAATTTAATAATTAGAA
AGTATAATCTGGTTACATCAGCTACTTGTTCAATAAATTAAGGGCTACAT
TCATATTAGGATCCGAGGCTGGTATAAATCGTCAGTTAATTAGCCAAAAT
TGGCTAAATTTGTAACAAAATCGGGAAGAAATACCCAATTTTGTTACAGT
TTTAGCCGTTTCTGGGTATTGAATAAGTTGTTTTAGCATTATCAATATGA
TTAATGTTTCAATCAACCATTTGTTATACTTATTTCAATATCACTTTGCA
ATGAGAGGTGTAACAAAAATCATACTTGCCAAAGCTTGGCTGTTAGTGTA
ACatgacattttcattaaatcGATGGGACACTTTAATTATGAATTGACTG
TTTACTCCTAATGCAATATCCAGTTAAATCAATTTAACATAGAAAATACT
ATCATTTAGTTACACCAGCTACTTGTTCATTAAATTAAGGGCTACATTCA
TACCAGCTGGGCTGGTCAATGACCTGGTTCCTGTAGAAGTAAAAGCCaaa
cgaaaaacaaaaatttatgttGCCTCCCGTCGGGTTGCGACATGTACAGT
GCGCAAAATGCAAACTAAAGTCTTGTCAGAAAGAGGACTGCATATCAGTA
TTGGCCTTCTCTCCAATTTGAGGCCTTTCTTCGTCACAGACCCAACAGAC
AAAGAGAAAGTCATGTGTATGTGTAAATTGTGTCTGAACTTTAGATTGAA
GTTCAATGCCCTTATGTCACATTCCAAACGTCATGGAGGTGAGAGTTTTG
ATTCTATTTCAAGATATTATATGGGCTCGTGTGCCTGTAGCAAAGGTGAA
AATGGATATTGGACCCTAAAATGTGTAACTGGAAACTGTAACAAATGCAA
AAATAAGAAACTCACTGTAGTTCCAAAGCTTGATGAAGGTGAGCTTTTAA
GTTACAACCAGTTTACCGTCAAAACAACGGCttatatttgtaaaaaaaaa
caaaaaacaaaaaaattcaacccAAACTGTCAGGAAAGGCCTTCAAAGAG
ACGTGAGAATGGTTCATGACGAGTTGTTGTCTGAATCAAGTAAATACCTG
AAACATCAGGAATGATCGATTCCACTGGAAAAATGTACTTTCTCAAAACA
CTGAAACAATTTTTCACATGGATTATTCTGAAAATGTATCAGGTTCTCCC
AAATTTGAGCCCCAAGATGCTCATTTCagcaaaaaacaaatttcactaCA
TTGTACGGTTGCTCATCACGAGGACAAAAATATATACATTTATCACTTGT
CTGACAACCGTAAACATAATTATTGCTTCACCAAAGCTGTCATTGAGGAT
CTAATCCACCGCTATCCAGATCAAGAAATTTACAAGTTTAAAAGTGACAA
TTGTTCTGAACAATATAAATGTCTCAATGTATTCCCCGTTCTCAGCAAAC
TTTCACAAATTAAC Run BLAST on NCBI protein sequence of TCONS_00039437-protein >TCONS_00039437-protein ID=TCONS_00039437-protein|Name=TCONS_00039437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MQTKVLSERGLHISIGLLSNLRPFFVTDPTDKEKVMCMCKLCLNFRLKFN
ALMSHSKRHGGESFDSISRYYMGSCACSKGENGYWTLKCVTGNCNKCKNK
KLTVVPKLDEGELLSYNQFTVKTTAYICKKKQKTKKFNPNCQERPSKRRE
NGS Run BLAST on NCBI transcript from alignment at sc0002106:31419..33832 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039437 ID=TCONS_00039437|Name=TCONS_00039437|organism=Clytia hemisphaerica|type=transcript|length=2414bp|location=Sequence derived from alignment at sc0002106:31419..33832 (Clytia hemisphaerica)
GTTAATTTGTGAAAGTTTGCTGAGAACGGGGAATACATTGAGACATTTAT
ATTGTTCAGAACAATTGTCACTTTTAAACTTGTAAATTTCTTGATCTGGA
TAGCGGTGGATTAGATCCTCAATGACAGCTTTGGTGAAGCAATAATTATG
TTTACGGTTGTCAGACAAGTGATAAATGTATATATTTTTGTCCTCGTGAT
GAGCAACCGTACAATGtagtgaaatttgttttttgctGAAATGAGCATCT
TGGGGCTCAAATTTGGGAGAACCTGATACATTTTCAGAATAATCCATGTG
AAAAATTGTTTCAGTGTTTTGAGAAAGTACATTTTTCCAGTGGAATCGAT
CATTCCTGATGTTTCAGGTATTTACTTGATTCAGACAACAACTCGTCATG
AACCATTCTCACGTCTCTTTGAAGGCCTTTCCTGACAGTTTgggttgaat
ttttttgttttttgtttttttttacaaatataaGCCGTTGTTTTGACGGT
AAACTGGTTGTAACTTAAAAGCTCACCTTCATCAAGCTTTGGAACTACAG
TGAGTTTCTTATTTTTGCATTTGTTACAGTTTCCAGTTACACATTTTAGG
GTCCAATATCCATTTTCACCTTTGCTACAGGCACACGAGCCCATATAATA
TCTTGAAATAGAATCAAAACTCTCACCTCCATGACGTTTGGAATGTGACA
TAAGGGCATTGAACTTCAATCTAAAGTTCAGACACAATTTACACATACAC
ATGACTTTCTCTTTGTCTGTTGGGTCTGTGACGAAGAAAGGCCTCAAATT
GGAGAGAAGGCCAATACTGATATGCAGTCCTCTTTCTGACAAGACTTTAG
TTTGCATTTTGCGCACTGTACATGTCGCAACCCGACGGGAGGCaacataa
atttttgtttttcgtttGGCTTTTACTTCTACAGGAACCAGGTCATTGAC
CAGCCCAGCTGGTATGAATGTAGCCCTTAATTTAATGAACAAGTAGCTGG
TGTAACTAAATGATAGTATTTTCTATGTTAAATTGATTTAACTGGATATT
GCATTAGGAGTAAACAGTCAATTCATAATTAAAGTGTCCCATCgatttaa
tgaaaatgtcatGTTACACTAACAGCCAAGCTTTGGCAAGTATGATTTTT
GTTACACCTCTCATTGCAAAGTGATATTGAAATAAGTATAACAAATGGTT
GATTGAAACATTAATCATATTGATAATGCTAAAACAACTTATTCAATACC
CAGAAACGGCTAAAACTGTAACAAAATTGGGTATTTCTTCCCGATTTTGT
TACAAATTTAGCCAATTTTGGCTAATTAACTGACGATTTATACCAGCCTC
GGATCCTAATATGAATGTAGCCCTTAATTTATTGAACAAGTAGCTGATGT
AACCAGATTATACTTTCTAATTATTAAATTGATTTAACTGGATCTTTCAT
TAGGAGTAAACAGTCAATTCATAACTAAAGTATTCCTTCAATTCAATGAA
AATGTCATGTTACCCCCATGTTACACTACCAGCCAAGCTTCGGCAAGTAT
GACTTCTGTTACATCTCTTATTGCAAAGTGATATTGAAATAAGTATTACA
AAAGGTTGATTGAAACATGAATCATATTGATAATGCTGAAACCGCTTGTT
CATTCCCCAGAAACGGCTAATCTGTAACAAAATTGGATATTTCTTCCCAA
TTTTGTTACAAATTTAGCCAATTTAGGCTGATTAATGGAAATAAAGGCTT
TTGGAAGGTTCACCAAGTGAATAATATGTCATTGAGAcgcatatttttca
aatatgaaGCATGTAACTTAGACTTAAGTATGAATACCAGCCAATTTAAT
AATACTACTATCAATGGGCCTGAAAAGGGACCATTTTTAGAGTTAAAGGA
TTGAATGTTACGACATTAGCCAGTTTGTCCTATTATTTATTAGCAAAGTC
ATGATATTGTCTCAACCAATGCATGAAGTAAACAATCTATTGCCTTTTGA
CTAAGGATTTGTTGTTATGTCAACAAAATCTGGCTTAAATGGAACAGCAC
ATTGGGACATCTCAGCCTTGTTACACCATTAGCCGATCAACTTTTTAACC
CGAATGCATTGCCAATAGAATCCCCTTCAACCCCCTAATGATGCCAATGT
ACCATTTTTATGTGAATATTGCCTAATAGCTGTTTTAGAGTCATTAGCCa
gctttttagaaaattgcaaTGTTACATCATTAGCCAGAATTCTGGCAAGA
TTCAAATTATCATAACTTGAGATATACTAAACTTTGGAAATTGCTGTTAC
ATAATTTGCCAACAGAAATCTAATGAGCTAACCATCATGTTATTCTTTGA
GAAGGATCAAATTCTGTTAGAAAAATATAGGCTAATTTTGTAACATAGGT
CTGAAATGTCACAA Coding sequence (CDS) from alignment at sc0002106:31419..33832 >TCONS_00039437 ID=TCONS_00039437|Name=TCONS_00039437|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at sc0002106:31419..33832 (Clytia hemisphaerica)
TCATGAACCATTCTCACGTCTCTTTGAAGGCCTTTCCTGACAGTTTgggt
tgaatttttttgttttttgtttttttttacaaatataaGCCGTTGTTTTG
ACGGTAAACTGGTTGTAACTTAAAAGCTCACCTTCATCAAGCTTTGGAAC
TACAGTGAGTTTCTTATTTTTGCATTTGTTACAGTTTCCAGTTACACATT
TTAGGGTCCAATATCCATTTTCACCTTTGCTACAGGCACACGAGCCCATA
TAATATCTTGAAATAGAATCAAAACTCTCACCTCCATGACGTTTGGAATG
TGACATAAGGGCATTGAACTTCAATCTAAAGTTCAGACACAATTTACACA
TACACATGACTTTCTCTTTGTCTGTTGGGTCTGTGACGAAGAAAGGCCTC
AAATTGGAGAGAAGGCCAATACTGATATGCAGTCCTCTTTCTGACAAGAC
TTTAGTTTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039437-exon-sc0002106-1491911889:31419..33832 | TCONS_00039437-exon-sc0002106-1491911889:31419..33832 | Clytia hemisphaerica | exon |
| TCONS_00039437-exon-sc0002106-1510915933:31419..33832 | TCONS_00039437-exon-sc0002106-1510915933:31419..33832 | Clytia hemisphaerica | exon |
| TCONS_00039437-exon-sc0002106-1575043694:31419..33832 | TCONS_00039437-exon-sc0002106-1575043694:31419..33832 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0002106 | supercontig | sc0002106:31419..33832 . |
Blast
The following BLAST results are available for this feature:
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