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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL86831_cuf4 >transcript:BL86831_cuf4-protein ID=transcript:BL86831_cuf4-protein|Name=transcript:BL86831_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=359bp
MNNNISCNPFSQNEVDIALKQMKPGKAPGLDGLPLEVWKLPKTSERLTFF
CNQTLAGHRPPEWGRAGIVPVPKKGNLTLPDNYRGISLTQVAAKVYNRLI
LNRLRPFIDKLLRPNQNGFRPSRSTSGQILALRRIVEEVQNHQKEAVLIF
IDFKKAFDSINRTTMFEILLAYGIPTSIVNAIKIMYDNTSATVLTPEGET
DFFKIDTGVLQGDPLAPFLFIIVLDYALRKAINADDGLTLQRRRSSRHPA
VVISDLDFADDIGLLEDTIQAAQDLLYRVECATQEIGLYLNSSKTKVMHI
NPSDHPQALLAKDGSTIERVSDFKYLGSYSNSVYDVNVRIGQAWGACHAL
TKVWKAPIQ Run BLAST on NCBI mRNA from alignment at Sc0000309:273615..279328- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL86831_cuf4 ID=transcript:BL86831_cuf4|Name=transcript:BL86831_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=5714bp|location=Sequence derived from alignment at Sc0000309:273615..279328- (Branchiostoma lanceolatum)
TGAGGCGGCGGTAGCTGCGACGAGGAGTTGCAAGACTCGGGCGGGGGTAC
AGAGGTAAGCACTTCTAAAGAATCTTTAAAATGTTATTGTTTGTCGAATC
TTAGTCTTATGCATACGTCGACAAGTTCTTGAGAAGGTAGGAGATGAATT
TGATTTTATCCTTTAGTTCAGCTACGCCGTGTTGAACCAGTTTGTCAACT
TTGTGGTATTTCTGTCGACATGAATAGTTTGTGAACTTGCTTGTGTATTT
GCAACTCACCCGTAGCACGCTTTCATACTCGAAGTTGGAGAATTCTCAAT
TGTCTGTAGGGTTCTGGATATGTCATAATTGTCTTTTATGGAGGCCATTG
AAAGAGGTTTTGAGCCGGGGCGAGGGCCAAGACAAAAACATTGATTTGAG
GTAGGGTCATCGAACAAAATTGTGAAAATCCATGATACCGTCCAAGGTTT
TCAGACATGTAACAATCTGCTGCGATGGCCGCAGACCGTCGTTCGTGGAA
AAACATGTTATCGACTCCGTCTCAGCCGACTGATGATGATGAGAAATCTG
CTATTCAGAACGCACGGTGGGGTACGCGCATTTGGCCATGAACATTGCAA
ATGTGTAGAGACAGGACACTACTCGTATGCCAAAGATTGTAAGGAGCCTA
AGTAAACCTTAACATCTAGAAAAGGATTCTGCATAGCCATATTCTTTTCC
AGCTGTTAACGTTATTCATTTCGGAGACCTTCCTTTTGATGAATGAAAGA
CCTTTATTGTGCATTCATGCCCCGAGGGGCTAGGTACAGGTCGTCTAACT
TAACACATGGAACATACAAGGACATAATACAACAATACAAGCTGTAAACA
TATAGTGTAGACAAAACGTGTTATTAAACTAAGCTAGTCCAGTAGAGTCG
ACTTCTTCTCGCTTCTTTGTACATGTGTAAATATATGAGCAGACGATATT
TCTAATACAAGGATTATCCAGATGACACCGAGATTGATGGATTTGTTTGT
GCACAGCTCGCCGGGATACCACACCAGGTTCCTCCAACCGCGCAAACCCC
CTCTGTGACCAACATTCCTCCCGCAGGATGACCGGTGAGAGTCCGACGTC
CTATGTTAACAGGACTTTAAAAGAATCTTTATTTAGAATATCCAACAACA
ATGAAATTTCTTCTTCTTCTTCTCCTTGATGAAATTTACAGATACATGTA
CATGTGAGCACAAAAGCAACAAAAAAATAATGAACATTTTGCAACTTTGC
CCAGTCAACTAATCTAACAACAGGGCTTTGACAACCCGCGGATACAAGGC
TGTCTCTCTTCTCTCATTGACAAGTGGCGTTCTTTTCAAGCAACCCTTTT
GTCCAAGTAGAATTTAACATTGGTTTTGTCTCCTCTTTCTCCGTCTTACA
GCTAGTAATACTTTTCCTTATCAGGCCTGTTATCAACATCTTGCTTTTCT
TAAATCAATGATCTTATCTCTGTCAGTAGTTTCCGGGAAGACCACCAAGC
GGGAATCATCTTGGGCTCTGTAGTCTGTCGCTTCACGTTACAAGAAAGGC
GACAAACTGCATAAATCATCTTCATCTTTTTACCACTCACCGAGCGAAAC
CTCGCCTCAAAGTCTGTTTTATATCATACATCATTTACCCCTTTCAAGCA
GGCTGTTGGTTTCTCAAATTTGATATTTTGAGCGGGTATAAATCATGACG
TTGATATCAAACATGGTCACATGCCATAATTCCTACCAGTTTTGGGAAAT
TTGAGTACTGCTTAAACTACTCTTGATATGCAATCATCAATTCATGCCAA
AATATAACTTATGAAGTACCGGCACCCTTTCTTAAGCATTCCCGAAAACA
CTCCACCTCGTAAAGCATTTGACGTTTCACTTTCTGCTGACTCTGACTGT
GTTAATCATGTATGACATCTATAACGGCATTTGGCTTACATTGACAAATC
CTATAGTTGTATGTTGTACTACGTCGACATGTTAATCGATCAATTACTAC
TCCGTTTGCAGGATATATACATACAAGGATGTCGCACTTCTATTCAAAAT
AAATAAAAACTTTCCGTTTATACATGTGTTGAATACAAAGTACGGACCAA
AAGATGCCTGTCGGGTAAACATGATTTTGAAATAGGAAGAGTGCAATTAC
AATTATAAGAATCGGTTTTCATACATTGAATATGGAAGTCGGAAGAAATC
ATTAGATTTTCCGTGATCAAAGGTTTGTCATTTCCGTCCAAATGAGATCG
AAGATTGTTCAACAGAATTCTATATTACCCGTCCTATAGATAAATTCAAA
TAATTATTAGCTAGAAGATAACCCTTATTGCGCACAAATGAGTAAATATA
TGAATGGATGTTTAGAACTAGTAGTATAAGGCCACGATTCCACTAGACGG
CGATGTCGTTGCGCACTTCTAATTGTGTTTTGCCTAATCCTTTGTTTTTA
TAATTGGAATATCTTGTTTTTATGATTGGAATATCTTGTAAAATGTGAAA
ATATGGCTAAAATGCAACTAAACACTAAAATCGTTAAAATAGTCGTTTTT
TTATCTACGAAATTCCTTGAGCGCTCTGCACACTGTCGAAAACGTTCTTC
ACATATTTTCCGACGAAATTTACTCGTTTTCAATTTACATCACTGTCACT
GACACCGCACGCTGACAAAAATTAGAAACATGTCTTTCATCTAACTAACT
TAACTTCACGCGCCAAGCTAAGCCCATTGGCATAAGTTCTATCTTGCATC
TGATCACATCCATAAACACATGTACAAATAAGTAATTGAACGGTTAGAGT
AGAATAGAAAATGATAAAATCAAAGCAAGATGAACATTAATTTCTTTCCG
TTGTTGTTAACATTGTTTTAAATCTTTGTATATTTTTGACTTACTTGACT
TATATTCAGTATATATTATATAAGAACAAACATTTGTTAATGACAGTTCT
CTTTCTATTTGCAAGCTATTGAAAATCTATTGATGGTACTTACACATACT
TACACATATACTTACACTTATGATGATGACACATATGTGTTGTATCTAAG
TTGTTGTATCTAAGGAAAGGCATGCCACATACTTCCTAAAGATCGATGGA
TTAAAACACTTCAGACATATCACAAATTATATCAAAGCAAAGTGATTATA
TAGTGTTCTGTGAACTTCAGTCTGTACATTCAGAGGATTGTTATTCAATT
CCTTCTATTACACAGATATGACCCCGGTGATCAGGAGCTATCCGGCCCTA
CCTCCCACACAGAATCCATCCGTAGTGGGGAAAATCGCTGGAGACCGGCC
ACGGAAAAGGTGCATCGCTGGGAAGAGCCTGTCTGCCTTGCACTGCCTAG
AGGAACCACAAGTCGCCCAGAACAGCGACAGCGTGGGGAGAAATGCCATT
GAACGGAGATAACAGACCAGGAGCAGAGCCGTGTGCAGTCAAACTCAAGC
AAGGACTGCCCTGCTACAACCGGAGTAAACCCGACAGCACTTTGGCAGGC
AACGGACTGACCTGCACATGTGTTGCCCCATTAGCTACTTTGTACCAAAA
ATATGTATTATTTGTTTTAATGTGTATTCGAGTGTAACCGAGGGTGGGTA
CATTGCTTGTAAAAAGCCCATGAAAGTGTGTTGTACTATCACTGCATCAT
GAAAGCTATGGTCAGATGCGCCCTGTGGCCTGTACGTGACTTAAACTTTA
AAAGAGGACCGATACAACTCCCAACCAAACTTGGAATAGTCACTGTAACT
AGTCTATTGATGTGCCATGATCATCATTGACGTATTATCCTTCAAGCAGG
TGTCTCACTAGACTGCGGCACGTAGCGATGTCGCCCCGTCCTGAATTAGA
TTTATAATGAGAATCTCGTAAAACGTATGTTCGACTAAAATACAACAAAA
TATTAATGGAGATCTTGCATTTCTGGCGATGAGACGAAGACATGTTTATG
GTAGATATAATTTGCGGCATTAGAATTCATTTCATTTGCCATGCATATTC
TATTCTAAATGCGTGAATTACAAAGTGTAACCGTCAATCAATAGTAGTAC
CACATAGTGCGTAAATGCTTGGAACAAGCTTAGGTTTCTAATAGATGTAT
TTGATTAAGTCTATCAGCTGTTCTTGCACATGTGTACAGTGGAAATCGTA
CCTACTTTGAGCAAGCAATGTTACTTGCTGTGAACAGAGAGGGGTCTTTT
GAGATGATATAAAGACGGGAAATATATACGACAAGGGGGCAATATAGAAA
ACCTCGGTTAAGACCGAAATAAGCGGAGCCAACATCAAGTGGGGTCGTGC
AGGTATTGTACCTGTTCCAAAGAAAGGAAACTTGACACTTCCCGATAACT
ATAGAGGCATTTCCCTCACTCAAGTGGCTGCAAAGGTCTACAACCGCCTT
ATACTGAATAGACTAAGACCCTTCATCGATAAACTACTTCGCCCAAACCA
AAATGGATTCCGACCTTCCCGTTCAACATCAGGACAAATCCTGGCTCTCC
GTAGGATTGTGGNGGAGTCATATTCATCCAGGGTGAGGATAGACTCAATA
CTTGGAAAAACCATTTCTCCAAGTTGCTCTCTGCCGAAAACCCGCTGTCC
AACTCAACCGGAGTGTCAATTTCCCCAGTGTTCAACATGAACAACAACAT
CAGTTGCAACCCTTTTTCACAAAATGAAGTAGACATTGCCCTTAAGCAGA
TGAAACCAGGGAAGGCTCCTGGGCTTGATGGCCTACCTTTGGAAGTATGG
AAACTCCCCAAGACCAGTGAACGTCTCACATTTTTCTGTAATCAGACCCT
AGCCGGTCACAGACCTCCAGAGTGGGGTCGTGCAGGTATTGTACCTGTTC
CAAAGAAAGGAAACTTGACACTTCCTGACAACTATAGAGGAATTTCCCTC
ACCCAAGTGGCTGCAAAGGTCTACAACCGCCTTATACTGAATAGACTAAG
ACCCTTCATCGATAAACTACTTCGTCCAAACCAAAATGGATTCCGACCTT
CCCGTTCAACATCAGGACAAATCCTGGCTCTCCGTAGGATTGTGGAAGAA
GTCCAGAACCACCAGAAAGAAGCAGTTCTCATATTCATTGATTTCAAAAA
AGCTTTTGATTCTATTAATCGTACTACTATGTTTGAAATTCTGTTAGCAT
ATGGCATACCAACCTCAATAGTTAATGCAATCAAAATCATGTATGACAAC
ACATCTGCCACAGTTCTCACCCCAGAGGGGGAAACTGACTTCTTCAAGAT
TGACACAGGGGTCTTACAGGGCGATCCCCTCGCACCTTTCCTTTTCATAA
TCGTTCTGGATTATGCACTCCGCAAGGCCATCAACGCCGATGATGGCCTT
ACGCTACAAAGGAGACGGAGTTCCAGGCACCCAGCAGTGGTCATTTCAGA
CTTGGACTTCGCAGACGATATTGGTCTACTCGAGGACACTATCCAAGCTG
CACAAGACCTCCTATATAGGGTGGAATGTGCCACTCAGGAAATTGGCCTC
TATCTCAATTCCTCAAAAACCAAAGTGATGCACATAAATCCAAGTGACCA
CCCTCAGGCCTTACTAGCCAAAGATGGGTCCACTATTGAACGGGTTAGTG
ACTTTAAGTACTTAGGCAGCTATAGTAACTCTGTGTATGATGTCAATGTT
CGTATTGGCCAAGCCTGGGGTGCATGCCATGCCCTAACAAAGGTATGGAA
AGCCCCCATTCAAA Coding sequence (CDS) from alignment at Sc0000309:273615..279328- >transcript:BL86831_cuf4 ID=transcript:BL86831_cuf4|Name=transcript:BL86831_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=1077bp|location=Sequence derived from alignment at Sc0000309:273615..279328- (Branchiostoma lanceolatum)
ATGAACAACAACATCAGTTGCAACCCTTTTTCACAAAATGAAGTAGACAT
TGCCCTTAAGCAGATGAAACCAGGGAAGGCTCCTGGGCTTGATGGCCTAC
CTTTGGAAGTATGGAAACTCCCCAAGACCAGTGAACGTCTCACATTTTTC
TGTAATCAGACCCTAGCCGGTCACAGACCTCCAGAGTGGGGTCGTGCAGG
TATTGTACCTGTTCCAAAGAAAGGAAACTTGACACTTCCTGACAACTATA
GAGGAATTTCCCTCACCCAAGTGGCTGCAAAGGTCTACAACCGCCTTATA
CTGAATAGACTAAGACCCTTCATCGATAAACTACTTCGTCCAAACCAAAA
TGGATTCCGACCTTCCCGTTCAACATCAGGACAAATCCTGGCTCTCCGTA
GGATTGTGGAAGAAGTCCAGAACCACCAGAAAGAAGCAGTTCTCATATTC
ATTGATTTCAAAAAAGCTTTTGATTCTATTAATCGTACTACTATGTTTGA
AATTCTGTTAGCATATGGCATACCAACCTCAATAGTTAATGCAATCAAAA
TCATGTATGACAACACATCTGCCACAGTTCTCACCCCAGAGGGGGAAACT
GACTTCTTCAAGATTGACACAGGGGTCTTACAGGGCGATCCCCTCGCACC
TTTCCTTTTCATAATCGTTCTGGATTATGCACTCCGCAAGGCCATCAACG
CCGATGATGGCCTTACGCTACAAAGGAGACGGAGTTCCAGGCACCCAGCA
GTGGTCATTTCAGACTTGGACTTCGCAGACGATATTGGTCTACTCGAGGA
CACTATCCAAGCTGCACAAGACCTCCTATATAGGGTGGAATGTGCCACTC
AGGAAATTGGCCTCTATCTCAATTCCTCAAAAACCAAAGTGATGCACATA
AATCCAAGTGACCACCCTCAGGCCTTACTAGCCAAAGATGGGTCCACTAT
TGAACGGGTTAGTGACTTTAAGTACTTAGGCAGCTATAGTAACTCTGTGT
ATGATGTCAATGTTCGTATTGGCCAAGCCTGGGGTGCATGCCATGCCCTA
ACAAAGGTATGGAAAGCCCCCATTCAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000309 | genome | Sc0000309:273615..279328 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL86831_cuf4 |
| Biotype | protein_coding |
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