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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039249 ID=TCONS_00039249|Name=TCONS_00039249|organism=Clytia hemisphaerica|type=transcript|length=957bp
TTTTGAGAATAAAAAGCGTAACTTTTTTGAATGAGTTAAATGTGTACgta
ataaaaatctttaaaaaaactttaaaaaatctttacaaaattaGATACAT
TTCCTGGCATTTCCATCTTTTTTCTTACAATCCACTTCACTTTTCCACTC
TTTATAAGTTTTCTTCAAATAAGCCACAGAATCGTGTGgcatttttgttt
tgacgttATTAAGCATAACCATTTTCGGCGGTACCATTATGCTTCCATCA
TATTTTGGAAGGTGTACATCATCAAACTTGAATATGTTTTTGGAATCAAT
CTCATAGGCCCACATTCCTAGGCCATTACCATTCGTTTTACTAAATTCCA
AACTCATTCTTTTAGCACCTCTCCAAGTCTGATGAAAACCGAATTTTTTG
GTCAAAACATTCATTGCATCTTNTATCGATTCTCATCTGGCGTTTATAAT
CATAAAATGGTCCTGGTTCACATTCTCGAGTGTATTTTGTACATCCCAAA
GAAGTGATCGCGCCATCTGTGTGGACAATCCATTTGACTCGTTTGTTGGC
TCTTTTTAGCGTCTCACCGTATTTCTTATATACCATAATCTCATCCTCAA
GCAAACTCTCATAAAGATTATTACAAGTTGTATTCTCAAGTGAATAATTA
TATCTTGCTAGCTCGTAAAGTGTCCAATCTGCAGGCGAGTATTTAAAAGT
ATTGCAAACCTCAAACGGCACTTCAGATTCGTTCCGTAAAAGATTGTATT
TGTCAGAAAAAGTCTGCTTGGATCGAgtaaaaaacctcatttttggttTT
AGGTTTGGTCTTTTGAGCATTGTAGTCCATCTCGATGAATAAGACATTTT
CCGCAGTATGATGAACATCCCAACAATGAATATTAACATCAGGTAACgta
aaaatttcattctttGTTCTACCATTTCATTCTAGTTTGGTTTTCTCTTT
ATCTGAA Run BLAST on NCBI protein sequence of TCONS_00039249-protein >TCONS_00039249-protein ID=TCONS_00039249-protein|Name=TCONS_00039249-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MVEQRMKFLRYLMLIFIVGMFIILRKMSYSSRWTTMLKRPNLKPKMRFFT
RSKQTFSDKYNLLRNESEVPFEVCNTFKYSPADWTLYELARYNYSLENTT
CNNLYESLLEDEIMVYKKYGETLKRANKRVKWIVHTDGAITSLGCTKYTR
ECEPGPFYDYKRQMRIDXRCNECFDQKIRFSSDLERC Run BLAST on NCBI transcript from alignment at sc0002053:18821..19777 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039249 ID=TCONS_00039249|Name=TCONS_00039249|organism=Clytia hemisphaerica|type=transcript|length=957bp|location=Sequence derived from alignment at sc0002053:18821..19777 (Clytia hemisphaerica)
TTCAGATAAAGAGAAAACCAAACTAGAATGAAATGGTAGAACaaagaatg
aaatttttacGTTACCTGATGTTAATATTCATTGTTGGGATGTTCATCAT
ACTGCGGAAAATGTCTTATTCATCGAGATGGACTACAATGCTCAAAAGAC
CAAACCTAAaaccaaaaatgaggttttttacTCGATCCAAGCAGACTTTT
TCTGACAAATACAATCTTTTACGGAACGAATCTGAAGTGCCGTTTGAGGT
TTGCAATACTTTTAAATACTCGCCTGCAGATTGGACACTTTACGAGCTAG
CAAGATATAATTATTCACTTGAGAATACAACTTGTAATAATCTTTATGAG
AGTTTGCTTGAGGATGAGATTATGGTATATAAGAAATACGGTGAGACGCT
AAAAAGAGCCAACAAACGAGTCAAATGGATTGTCCACACAGATGGCGCGA
TCACTTCTTTGGGATGTACAAAATACACTCGAGAATGTGAACCAGGACCA
TTTTATGATTATAAACGCCAGATGAGAATCGATANAAGATGCAATGAATG
TTTTGACCAAAAAATTCGGTTTTCATCAGACTTGGAGAGGTGCTAAAAGA
ATGAGTTTGGAATTTAGTAAAACGAATGGTAATGGCCTAGGAATGTGGGC
CTATGAGATTGATTCCAAAAACATATTCAAGTTTGATGATGTACACCTTC
CAAAATATGATGGAAGCATAATGGTACCGCCGAAAATGGTTATGCTTAAT
aacgtcaaaacaaaaatgcCACACGATTCTGTGGCTTATTTGAAGAAAAC
TTATAAAGAGTGGAAAAGTGAAGTGGATTGTAAGAAAAAAGATGGAAATG
CCAGGAAATGTATCtaattttgtaaagattttttaaagtttttttaaaga
tttttattacGTACACATTTAACTCATTCAAAAAAGTTACGCTTTTTATT
CTCAAAA Coding sequence (CDS) from alignment at sc0002053:18821..19777 >TCONS_00039249 ID=TCONS_00039249|Name=TCONS_00039249|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at sc0002053:18821..19777 (Clytia hemisphaerica)
ATGGTAGAACaaagaatgaaatttttacGTTACCTGATGTTAATATTCAT
TGTTGGGATGTTCATCATACTGCGGAAAATGTCTTATTCATCGAGATGGA
CTACAATGCTCAAAAGACCAAACCTAAaaccaaaaatgaggttttttacT
CGATCCAAGCAGACTTTTTCTGACAAATACAATCTTTTACGGAACGAATC
TGAAGTGCCGTTTGAGGTTTGCAATACTTTTAAATACTCGCCTGCAGATT
GGACACTTTACGAGCTAGCAAGATATAATTATTCACTTGAGAATACAACT
TGTAATAATCTTTATGAGAGTTTGCTTGAGGATGAGATTATGGTATATAA
GAAATACGGTGAGACGCTAAAAAGAGCCAACAAACGAGTCAAATGGATTG
TCCACACAGATGGCGCGATCACTTCTTTGGGATGTACAAAATACACTCGA
GAATGTGAACCAGGACCATTTTATGATTATAAACGCCAGATGAGAATCGA
TANAAGATGCAATGAATGTTTTGACCAAAAAATTCGGTTTTCATCAGACT
TGGAGAGGTGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039249-exon-sc0002053-1491911889:18821..19777 | TCONS_00039249-exon-sc0002053-1491911889:18821..19777 | Clytia hemisphaerica | exon |
| TCONS_00039249-exon-sc0002053-1510915933:18821..19777 | TCONS_00039249-exon-sc0002053-1510915933:18821..19777 | Clytia hemisphaerica | exon |
| TCONS_00039249-exon-sc0002053-1575043694:18821..19777 | TCONS_00039249-exon-sc0002053-1575043694:18821..19777 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002053 | supercontig | sc0002053:18821..19777 . |
Blast
The following BLAST results are available for this feature:
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