TCONS_00039079 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039079
Unique NameTCONS_00039079
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length719

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039079 ID=TCONS_00039079|Name=TCONS_00039079|organism=Clytia hemisphaerica|type=transcript|length=719bp
GCTGAGTGATGGACACATATTAGATGTATGTTCGTCCGGCGCCTCATTGG
ATAGCCTCTCCTCAGAAGTCAACCCTCTTCCTCCACGCGGTGTCCACCTG
GTTAACACAAATCGAGGGCTCTGGCGACAGGTCAAGTATTCGGCGTCCTT
TACTTGCTGGCTTATTCAGTTTTACTGTGAGGTTTGACTGAAGTGAGAGT
CTGCTGATTTAGGATCGGGGTGGTTTATTGACAAGTGGTTAACACTTTTT
GGTTTCATTGTTCTCTTGATCCAATATATTTCCGATCTTTGCGCAGACTC
GATCTTCCGACGCTTGCATATAGACGAGAGCGGAACGACATGATTGAAAT
ATACAAAAGTTTCAATGTCTACGATAGATCTTCACTACACAAAACCTTTC
AGCACCAGATGCGTGTCACATGGAACCATGAACACGACCTTCAACTCATT
GAGCGAATCCCAAAAGATGGCGCGAGAGGTGTACAGTTCAATTCATTTTA
TTATCGAACAATCAATCCTTGGAATAATCTACCAGCCGACGTCGTCAAAT
CCAAAACCGTGTTCCAATTCAAGGACGAAGCATGGAAAGAAAGACCGCAA
AGACTCCAGCAACCAAACGGGATAGAAGAGAACTTTTGAATTCCGGACTT
AACGTAACGAATTTTTTGTAAACAACTTTATTGTAGATCCTTTCGGAGAG
GCAGAAATGCCTGTGAAGG
Run BLAST on NCBI

transcript from alignment at sc0002006:25938..26656

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039079 ID=TCONS_00039079|Name=TCONS_00039079|organism=Clytia hemisphaerica|type=transcript|length=719bp|location=Sequence derived from alignment at sc0002006:25938..26656 (Clytia hemisphaerica)
CCTTCACAGGCATTTCTGCCTCTCCGAAAGGATCTACAATAAAGTTGTTT
ACAAAAAATTCGTTACGTTAAGTCCGGAATTCAAAAGTTCTCTTCTATCC
CGTTTGGTTGCTGGAGTCTTTGCGGTCTTTCTTTCCATGCTTCGTCCTTG
AATTGGAACACGGTTTTGGATTTGACGACGTCGGCTGGTAGATTATTCCA
AGGATTGATTGTTCGATAATAAAATGAATTGAACTGTACACCTCTCGCGC
CATCTTTTGGGATTCGCTCAATGAGTTGAAGGTCGTGTTCATGGTTCCAT
GTGACACGCATCTGGTGCTGAAAGGTTTTGTGTAGTGAAGATCTATCGTA
GACATTGAAACTTTTGTATATTTCAATCATGTCGTTCCGCTCTCGTCTAT
ATGCAAGCGTCGGAAGATCGAGTCTGCGCAAAGATCGGAAATATATTGGA
TCAAGAGAACAATGAAACCAAAAAGTGTTAACCACTTGTCAATAAACCAC
CCCGATCCTAAATCAGCAGACTCTCACTTCAGTCAAACCTCACAGTAAAA
CTGAATAAGCCAGCAAGTAAAGGACGCCGAATACTTGACCTGTCGCCAGA
GCCCTCGATTTGTGTTAACCAGGTGGACACCGCGTGGAGGAAGAGGGTTG
ACTTCTGAGGAGAGGCTATCCAATGAGGCGCCGGACGAACATACATCTAA
TATGTGTCCATCACTCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023527XLOC_023527Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039079-exon-sc0002006-1491911889:25938..26656TCONS_00039079-exon-sc0002006-1491911889:25938..26656Clytia hemisphaericaexon
TCONS_00039079-exon-sc0002006-1510915933:25938..26656TCONS_00039079-exon-sc0002006-1510915933:25938..26656Clytia hemisphaericaexon
TCONS_00039079-exon-sc0002006-1575043694:25938..26656TCONS_00039079-exon-sc0002006-1575043694:25938..26656Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002006supercontigsc0002006:25938..26656 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.82558	2.04432	1.18883	0.73577	0.75049	0.561541	0.357743	0.586101	0.407146	0.0812998	0.140956	0.258168	0.138795	0.0674329	0.0395009	0.139724	0.0522216	0.160576	0	0	0	0	0.545693	0.231443	0	0.866544	0.257313	0	0.174621	0.11136
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top