transcript:BL85666_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85666_cuf0
Unique Nametranscript:BL85666_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85666_cuf0

>transcript:BL85666_cuf0-protein ID=transcript:BL85666_cuf0-protein|Name=transcript:BL85666_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=154bp
MSLGGSWIRLTGFMLLIPYIAAVCPLVNYASTSIDGYCYREKVGQFDFHA
AEDICAADGALLITDKNPYRHMWLRLKDFAEDFWLGLQDEDVNGEYFWSD
GEPLTQQTYWEPTIPDDPTKHCVISVRDGIGGVTEQSNWAKADCHNLTTN
VFCE
Run BLAST on NCBI

mRNA from alignment at Sc0000000:1142784..1146457-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85666_cuf0 ID=transcript:BL85666_cuf0|Name=transcript:BL85666_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3674bp|location=Sequence derived from alignment at Sc0000000:1142784..1146457- (Branchiostoma lanceolatum)
CAGTTATCAACGTGCGGCAAGCAGGCGCACCCCGAATACTCTGTGGATAT
GTCTTATATCAACAGGTAAGAACGTTGAAAGTCTCTTATCTTTATCGACA
ACGTTAAATACCTACTTATTAGTGTGTATATGAACAATGTTTTGGCAACG
CAATACTTCCTCCTCTCCCCCTGTATACAAGAGTGACCTGGTCTTTGAAT
GGTAAACATATGAATACCCGAAGAACACTAGTGATACTTCAATCGACACA
AAATCGGTACGTTTAAGCCTTTTGTTCGCTTCTGAGCATAAAATACCAGT
AATTCATATAGTCTTTATGTTATTCTTACTACTGTTGGTCTTTCCTAGAA
TAGCATTGGAAACTGACAACAGGTATTGGGATTTTTTTTGATAATCTATT
CCTATTAACCAAATCAAACAGTTAGTGATCTCTATAGCTTTAAACCTTAT
TTGTGTGTCTTAACTATTAAGAAAATCTAAACATGTCGACGTGGCACTTC
CTCATCGGCAAAATACTTAAGCCAGTCAGTCGTTCGGAAAATAGCTTGAC
AATTTGACATTTGTATCATGCGAACACTTCTGCCGACCTTTGACGCCTCA
ACTCCCAACACTAGATATATCTCACGGGCAAGAAAAGAACTGTGCAAATG
TTGGGTCAAATCAATATAACAATCATATTGAGGATTTATCTCCCGAGGGT
CCTTATTAACTGATTTAAAGTCTGGTTATTTATAAAACACTGGAAACATA
TGCCCCTCTTTCATAGTGGACCATTCCCGAGCAATCGGTAAGTGGCGTGT
CCTCGCCCGAGGAGATAAACGTATTTGTAGATAAAGAGTGCTTAATCTTT
TGATACACCACCCTTTTAAAAAAATTGAAGAATAGAATGATTTCGATTGA
CAGGCAGATATCAAGATGTATAATTGAAAAACCTTTGCGATTGAAGATGT
AATGAAACATTCCATTAGACTTCCAAGTACACAACAGTGTTTGGTAGTCA
CCCATACCCTAAAGGAATGATTATTACGCTAATTAAGCCAGTCTCGCTTG
TGCGTCACTTGCAAGCTTCGTACGCAAGCTTCTATCTCATTGACCCCGCG
GTACGTTGGCGACCTCACTGCGACCACGCTGCGGTTCGACAGCGCGCTCA
ACGAAATCCATCGATAAAAAACAAATCTTTTTAGGTTTTGTGTGTTTTGC
TGTCTTTTTAGTCATACTTGCATGGTATTCCCCTTAAGGGTAACCTTTCC
TTAGACCTTAGGTCCTCCTGTGCCCTTAAGGGTAAGGGTAACACAAATCC
AGTTTAGGGCGCTGCGAGGTCGCCAACGTGCCGCGGGTCATGTGAGATAG
GGTCTGACGTCACAAGACTGATCTTTCAAGTTTGGACAAGACATGGTCGC
GGCGCTGTACCTATTACCGAGAACTGGTGACATGCATTTAAGTTCGCGTG
GATTTAATTTCGCGGTAGGGAAAACATGGAGTGTTCGCGGTGGTTTTAAG
TTTGTGTTTGAGACAACAGTAGATGGTTTTAAGTTCGCGGCGAAGAGCTT
ACCGCGAAAACCGCGAGCATAAAACCACCGCGAACATTTCTGCATTTACA
ATATGTCCTCTGATACAGAATGCTTCTGCTTTTCAGGACGACTCGGTAAG
AAACAACTCCATACACGTCGGTTGAAAACCATTTGTTTCGCCTTGGGCGG
GGGAAGTTCTTCGCAGTTTGTGTACTCGTAGACACCCGACAAAAGTTGGC
AGACATGTCGTTGGGAGGCTCGTGGATTCGGCTGACTGGGTTTATGTTGC
TCATCCCCTACATCGCCGCAGGTAAGTGTGTAGCTATTTCTAATGAAAAT
GGTCTTAGAAAACGTTTACAGAAAGTCAGCATTTGCGTGCAAACACAGGG
TATTTTATGTTACATAAAGAGTGGTATAGAAATGTCTGACCGCATCTTAT
AACACTACTTTTAAGTCAAACATTACAATATTTATCCCTTCCTTATTGTT
TGGTCAAAATACCAGACGAAAGAGAAACCAACACAAACGTTAGAGAAAAA
AAAAGTTTTCCTTACGCTTTAAGCGCACCCTAGCGACAACATGTTGAATT
GCCGCTGTGATCTATTCTCCAAGCAGATTCTCCTTCGATCGAGAGGGGTA
GTTTTGTCCGGGATTTTAACGTTCCTCTCCTCTCTGATCCCTATGTCAAG
TCAGGGGAAGGGGTATCCTATGTAATAGTTACCTCGTCCAGGGATATCAC
AATGAGACAGACCTAAGGAATACGGAATATAGTCTGAATCAAACTTGAAC
TGCAATTGCCAACACATAAAACTGGACTTACCCAAATTTTCGACTTGCCA
AGGTATGATTAATCCACTGCTTCCGTGACGTCACGTTATACAGATAGAAC
ACGTGTCTCGGTGAGCAGCGGGTCATATGTTGTATTGGAAATTGCAGTTC
AACTTTGATTCAGAATGGTTTCTATCAATACAGATGAACGTTCAAGTGAT
TACGGAATATAGTCTGGGATTTGACGACTTGACGATTTCTATTTTCAGTT
TGCCCACTAGTAAATTACGCATCGACCAGTATCGACGGTTACTGCTACAG
AGAGAAAGTGGGGCAATTTGACTTCCACGCAGCCGAGGACATCTGTGCGG
CAGACGGTGCTCTACTCATAACGGATAAAAACCCCTACAGGTATGAGGAT
GGGTGTTTTCAGGCAAACGTAATGGATGAAAAATTTTACAGGTATGCGGG
TGGATCTTTTTGACAAACCAGTCGTTTTCGAATAAACATCACTGATTCTT
CGTCTACTGGGCAGAGCTTGGCATCCACAAGATTGGACATCTCAATGCAA
AATTGCAGAATGTGCACAGAACCATACATGTTTTGATATGGATAAAGCGT
ATCAAAGTAAAAAAAAAGATAATTCGACTTCTGAACCTAAATACAGACTC
AATTCATGTTCAATATAATTCACATCATTGATATTGATTGATTATGCCAA
CACATATATATCATATTATGCCATCATTGGAATAACTCAGGTGAAGACAA
AGGCTATTGGAAAAATGTTTTAACTTCAGTGGTTGGCTGACTCACTCACT
CCTCCTTTTGCTCGGTCAGACATATGTGGCTCCGACTGAAAGACTTCGCC
GAAGATTTTTGGCTTGGGCTGCAAGACGAAGACGTAAATGGGGAGTACTT
TTGGAGCGACGGAGAACGTAAGTAGCAGCTTCAACATTTCATTCAGTTCC
ACAGTAGAACAACATATCTGTTATCCACACTTAAAGACACGCCTTATCAT
ATTTGAAGATATGATGAGGCGTATCTTTATGGACATTGGAAAAGGAATAA
GATAATCACTACTTATTCTTCTTCGGCGCTTTACGTCTCGGAAGACGGTC
AACAGTTACAGCAAGTCTCGCTTGTTAAACATGTAGTATACCATAAAAGA
AAGTCAAACTTTAGAATACGGTAAAATCATTTGATGATGGTTGCTAATGT
ATATTTTCTCCACCGGAAGCTTTGACGCAGCAGACATATTGGGAGCCCAC
GATTCCCGACGACCCCACAAAGCATTGCGTCATCTCTGTCCGAGATGGAA
TCGGAGGGGTCACCGAACAGTCGAACTGGGCGAAGGCAGACTGCCACAAC
CTCACCACCAACGTCTTCTGTGAA

Coding sequence (CDS) from alignment at Sc0000000:1142784..1146457-

>transcript:BL85666_cuf0 ID=transcript:BL85666_cuf0|Name=transcript:BL85666_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1848bp|location=Sequence derived from alignment at Sc0000000:1142784..1146457- (Branchiostoma lanceolatum)
ATGTCGTTGGGAGGCTCGTGGATTCGGCTGACTGGGTTTATGTTGCTCAT
CCCCTACATCGCCGCAGTTTGCCCACTAGTAAATTACGCATCGACCAGTA
TCGACGGTTACTGCTACAGAGAGAAAGTGGGGCAATTTGACTTCCACGCA
GCCGAGGACATCTGTGCGGCAGACGGTGCTCTACTCATAACGGATAAAAA
CCCCTACAGACATATGTGGCTCCGACTGAAAGACTTCGCCGAAGATTTTT
GGCTTGGGCTGCAAGACGAAGACGTAAATGGGGAGTACTTTTGGAGCGAC
GGAGAACCTTTGACGCAGCAGACATATTGGGAGCCCACGATTCCCGACGA
CCCCACAAAGCATTGCGTCATCTCTGTCCGAGATGGAATCGGAGGGGTCA
CCGAACAGTCGAACTGGGCGAAGGCAGACTGCCACAACCTCACCACCAAC
GTCTTCTGTGAAATGTCGTTGGGAGGCTCGTGGATTCGGCTGACTGGGTT
TATGTTGCTCATCCCCTACATCGCCGCAGTTTGCCCACTAGTAAATTACG
CATCGACCAGTATCGACGGTTACTGCTACAGAGAGAAAGTGGGGCAATTT
GACTTCCACGCAGCCGAGGACATCTGTGCGGCAGACGGTGCTCTACTCAT
AACGGATAAAAACCCCTACAGACATATGTGGCTCCGACTGAAAGACTTCG
CCGAAGATTTTTGGCTTGGGCTGCAAGACGAAGACGTAAATGGGGAGTAC
TTTTGGAGCGACGGAGAACCTTTGACGCAGCAGACATATTGGGAGCCCAC
GATTCCCGACGACCCCACAAAGCATTGCGTCATCTCTGTCCGAGATGGAA
TCGGAGGGGTCACCGAACAGTCGAACTGGGCGAAGGCAGACTGCCACAAC
CTCACCACCAACGTCTTCTGTGAAATGTCGTTGGGAGGCTCGTGGATTCG
GCTGACTGGGTTTATGTTGCTCATCCCCTACATCGCCGCAGTTTGCCCAC
TAGTAAATTACGCATCGACCAGTATCGACGGTTACTGCTACAGAGAGAAA
GTGGGGCAATTTGACTTCCACGCAGCCGAGGACATCTGTGCGGCAGACGG
TGCTCTACTCATAACGGATAAAAACCCCTACAGACATATGTGGCTCCGAC
TGAAAGACTTCGCCGAAGATTTTTGGCTTGGGCTGCAAGACGAAGACGTA
AATGGGGAGTACTTTTGGAGCGACGGAGAACCTTTGACGCAGCAGACATA
TTGGGAGCCCACGATTCCCGACGACCCCACAAAGCATTGCGTCATCTCTG
TCCGAGATGGAATCGGAGGGGTCACCGAACAGTCGAACTGGGCGAAGGCA
GACTGCCACAACCTCACCACCAACGTCTTCTGTGAAATGTCGTTGGGAGG
CTCGTGGATTCGGCTGACTGGGTTTATGTTGCTCATCCCCTACATCGCCG
CAGTTTGCCCACTAGTAAATTACGCATCGACCAGTATCGACGGTTACTGC
TACAGAGAGAAAGTGGGGCAATTTGACTTCCACGCAGCCGAGGACATCTG
TGCGGCAGACGGTGCTCTACTCATAACGGATAAAAACCCCTACAGACATA
TGTGGCTCCGACTGAAAGACTTCGCCGAAGATTTTTGGCTTGGGCTGCAA
GACGAAGACGTAAATGGGGAGTACTTTTGGAGCGACGGAGAACCTTTGAC
GCAGCAGACATATTGGGAGCCCACGATTCCCGACGACCCCACAAAGCATT
GCGTCATCTCTGTCCGAGATGGAATCGGAGGGGTCACCGAACAGTCGAAC
TGGGCGAAGGCAGACTGCCACAACCTCACCACCAACGTCTTCTGTGAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85666gene:BL85666Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85666_cuf0transcript:BL85666_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85666_cuf0-E1BL85666_cuf0-E1-1564476830-11017Branchiostoma lanceolatumexon
BL85666_cuf0-E2BL85666_cuf0-E2-1564476830-11015Branchiostoma lanceolatumexon
BL85666_cuf0-E3BL85666_cuf0-E3-1564476830-11012Branchiostoma lanceolatumexon
BL85666_cuf0-E4BL85666_cuf0-E4-1564476830-11010Branchiostoma lanceolatumexon
BL85666_cuf0-E5BL85666_cuf0-E5-1564476830-11008Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:1142784..1146457 -
Properties
Property NameValue
Transcript idBL85666_cuf0
Biotypeprotein_coding