TCONS_00038953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038953
Unique NameTCONS_00038953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038953 ID=TCONS_00038953|Name=TCONS_00038953|organism=Clytia hemisphaerica|type=transcript|length=330bp
GAGGAAGAAGGAAAGAAACGTCCATTGTTAGTCTCTCTTAACGATGAGTC
TGATAAATGGAATTTACTTGGCAATCTTACAGCACTGAAGGATAACGCGA
CGTACAAAGGCATTAGCGTTACTGAGGATCTCACCCCTGATGAAAGAAGA
CAATTCAAGGTACTCTCAACAGAAGCCAAAACAAGAAACTCACAAGAGAG
ATCAGAAACATATATCTATCGTGTGAGAGGCAACTCAAAAAACGGCTTTT
ACCTGAAGAAGATCAAAGTCGCAAACCACCAATAAAAACAAGAGAAACGC
ATAaacaagtatcaaaaaacaaaaacgaga
Run BLAST on NCBI

transcript from alignment at sc0001975:7146..7475

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038953 ID=TCONS_00038953|Name=TCONS_00038953|organism=Clytia hemisphaerica|type=transcript|length=330bp|location=Sequence derived from alignment at sc0001975:7146..7475 (Clytia hemisphaerica)
tctcgtttttgttttttgatacttgttTATGCGTTTCTCTTGTTTTTATT
GGTGGTTTGCGACTTTGATCTTCTTCAGGTAAAAGCCGTTTTTTGAGTTG
CCTCTCACACGATAGATATATGTTTCTGATCTCTCTTGTGAGTTTCTTGT
TTTGGCTTCTGTTGAGAGTACCTTGAATTGTCTTCTTTCATCAGGGGTGA
GATCCTCAGTAACGCTAATGCCTTTGTACGTCGCGTTATCCTTCAGTGCT
GTAAGATTGCCAAGTAAATTCCATTTATCAGACTCATCGTTAAGAGAGAC
TAACAATGGACGTTTCTTTCCTTCTTCCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023417XLOC_023417Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038953-exon-sc0001975-1491911889:7146..7475TCONS_00038953-exon-sc0001975-1491911889:7146..7475Clytia hemisphaericaexon
TCONS_00038953-exon-sc0001975-1510915933:7146..7475TCONS_00038953-exon-sc0001975-1510915933:7146..7475Clytia hemisphaericaexon
TCONS_00038953-exon-sc0001975-1575043694:7146..7475TCONS_00038953-exon-sc0001975-1575043694:7146..7475Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001975supercontigsc0001975:7146..7475 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04533	0.285912	1.1636	1.1368	5.4232	3.21466	2.86129	2.78034	1.77032	2.55442	0	0.755747	2.41479	4.58297	1.33189	1.36006	0.880403	1.02998	1.39881	1.48017	2.92833	2.45549	1.00852	1.73586	3.21952	6.43397	1.59366	1.83474	1.22159	0.331556
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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