TCONS_00038547 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038547
Unique NameTCONS_00038547
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length771

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038547 ID=TCONS_00038547|Name=TCONS_00038547|organism=Clytia hemisphaerica|type=transcript|length=771bp
gccattgtgcgattagctcgtaatcacataataactcgtccaattcgaaa
attgcactcgtgatttttttgtttcgaattttatcgaaaattaataacaa
aaaaatcactcgtgcaattatattcgaattgcactcgttatcatgtgatt
acatatacttatTCTAAGCCCAGTTAATATGACGAGTTTTGGGGATTTTA
CTTTATGCAAAAATTTGTGCGCTTTCTTTGGGACACATCGTAGTGATAAA
CCAGGTTTTCTACAGAACTTTAAATACAAGCtaagttttttatctttgtt
taaATATAAACCTCTAATAACTACAGAGTACATGCTAAGACTGCAACTTG
TTACTTGAGAAAGTGTCTGAATCACCCGGGGGCTGAATCACCAAGACAAG
GCGTAATTATTTTCCAGAAAGATGATCagtatcaaaatcaaaatccagAA
AAGATTTCGCATACCGATTTCACAGCCAAAATTAGGATAAATGATCTTCA
ACATTTGTCTGATCAAATCGAAGGACTTTCCCTCCAAAGTCACTCGTTTG
GTTTGCGATTCCTTGAAACTTCCATTGAACATTTTATCGAAGTAAGGTGA
AGCCAGGGATAATATCATGGAATGAACGTGAAGCTCTTTTTCTTCAACAA
CCAAAACTGCATCGCTGCTTTGCCATGCTTCCAAAAATGGTCCACCTTGT
TTTGCAGATGCTTCTGTCATATCTTTCTCTTTCTGTatctttaaaatgaa
atatCGAATGTttgattacac
Run BLAST on NCBI

protein sequence of TCONS_00038547-protein

>TCONS_00038547-protein ID=TCONS_00038547-protein|Name=TCONS_00038547-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MTEASAKQGGPFLEAWQSSDAVLVVEEKELHVHSMILSLASPYFDKMFNG
SFKESQTKRVTLEGKSFDLIRQMLKIIYPNFGCEIGMRNLFWILILILII
FLENNYALSW
Run BLAST on NCBI

transcript from alignment at sc0001878:17729..18499-

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038547 ID=TCONS_00038547|Name=TCONS_00038547|organism=Clytia hemisphaerica|type=transcript|length=771bp|location=Sequence derived from alignment at sc0001878:17729..18499- (Clytia hemisphaerica)
GCCATTGTGCGATTAGCTCGTAATCACATAATAACTCGTCCAATTCGAAA
ATTGCACTCGTGATTTTTTTGTTTCGAATTTTATCGAAAATTAATAACAA
AAAAATCACTCGTGCAATTATATTCGAATTGCACTCGTTATCATGTGATT
ACATATACTTATTCTAAGCCCAGTTAATATGACGAGTTTTGGGGATTTTA
CTTTATGCAAAAATTTGTGCGCTTTCTTTGGGACACATCGTAGTGATAAA
CCAGGTTTTCTACAGAACTTTAAATACAAGCTAAGTTTTTTATCTTTGTT
TAAATATAAACCTCTAATAACTACAGAGTACATGCTAAGACTGCAACTTG
TTACTTGAGAAAGTGTCTGAATCACCCGGGGGCTGAATCACCAAGACAAG
GCGTAATTATTTTCCAGAAAGATGATCAGTATCAAAATCAAAATCCAGAA
AAGATTTCGCATACCGATTTCACAGCCAAAATTAGGATAAATGATCTTCA
ACATTTGTCTGATCAAATCGAAGGACTTTCCCTCCAAAGTCACTCGTTTG
GTTTGCGATTCCTTGAAACTTCCATTGAACATTTTATCGAAGTAAGGTGA
AGCCAGGGATAATATCATGGAATGAACGTGAAGCTCTTTTTCTTCAACAA
CCAAAACTGCATCGCTGCTTTGCCATGCTTCCAAAAATGGTCCACCTTGT
TTTGCAGATGCTTCTGTCATATCTTTCTCTTTCTGTATCTTTAAAATGAA
ATATCGAATGTTTGATTACAC

Coding sequence (CDS) from alignment at sc0001878:17729..18499-

>TCONS_00038547 ID=TCONS_00038547|Name=TCONS_00038547|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0001878:17729..18499- (Clytia hemisphaerica)
TCACCAAGACAAGGCGTAATTATTTTCCAGAAAGATGATCAGTATCAAAA
TCAAAATCCAGAAAAGATTTCGCATACCGATTTCACAGCCAAAATTAGGA
TAAATGATCTTCAACATTTGTCTGATCAAATCGAAGGACTTTCCCTCCAA
AGTCACTCGTTTGGTTTGCGATTCCTTGAAACTTCCATTGAACATTTTAT
CGAAGTAAGGTGAAGCCAGGGATAATATCATGGAATGAACGTGAAGCTCT
TTTTCTTCAACAACCAAAACTGCATCGCTGCTTTGCCATGCTTCCAAAAA
TGGTCCACCTTGTTTTGCAGATGCTTCTGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023126XLOC_023126Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038547-proteinTCONS_00038547-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038547-exon-sc0001878-1575043694:17729..18499TCONS_00038547-exon-sc0001878-1575043694:17729..18499Clytia hemisphaericaexon
TCONS_00038547-exon-sc0001878-1510915933:17729..18499TCONS_00038547-exon-sc0001878-1510915933:17729..18499Clytia hemisphaericaexon
TCONS_00038547-exon-sc0001878-1491911889:17729..18499TCONS_00038547-exon-sc0001878-1491911889:17729..18499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001878supercontigsc0001878:17729..18499 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.175003	0.336607	0.0934689	0.691461	5.02223	3.63683	4.06399	5.99605	2.33464	4.25921	3.01701	1.44809	3.70602	4.18325	1.32659	1.00933	2.59194	1.50318	1.27686	2.15334	1.21666	0.868731	0.818128	0.844675	4.9283	4.83669	1.6979	1.10584	0.961855	0.634062
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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