TCONS_00038361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038361
Unique NameTCONS_00038361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038361 ID=TCONS_00038361|Name=TCONS_00038361|organism=Clytia hemisphaerica|type=transcript|length=515bp
CACCTTCGTTGGAGAACGCTGAGCTAATCTCAACACCAGCACCAAAACAA
CAATATAATACAAATGATGTTGTATATTACAAATGTAAATTCGGGTATCA
TTTCAAAGGGAGTAGTGccacaaaacacaaaacaagATGTACAGAAAATG
GTAACTTCAGTCCAGCCCCTTTGAAATGTTacgATTTGTGTGACAACCGT
TGTCAAAATGATGCTTTTTGTAATCAAGGAAGATGTAGTTGCGATCAAAA
TCATATTGGAGTCAGCTGTGAAATGAGAATTTGCAAATTACCATCCGTTC
TACATGGCACAGTGAAACAGGTCAATCCCTTAAACGTGGACGGCAAACCT
GGTTGGGTCCGTGAAGGCGCCAGCATATTTATTAAATGTGACAAAGGCTT
TTCTATCAAGAGGGGAAAGAAGTTTTCACGTTGTCACCCTGGATTAGGAT
GGGATTATGGTACCCTCCCTGTCTGTCAACctGACATATGTGAGCATAGC
GACATATCGCATGGT
Run BLAST on NCBI

protein sequence of TCONS_00038361-protein

>TCONS_00038361-protein ID=TCONS_00038361-protein|Name=TCONS_00038361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
PSLENAELISTPAPKQQYNTNDVVYYKCKFGYHFKGSSATKHKTRCTENG
NFSPAPLKCYDLCDNRCQNDAFCNQGRCSCDQNHIGVSCEMRICKLPSVL
HGTVKQVNPLNVDGKPGWVREGASIFIKCDKGFSIKRGKKFSRCHPGLGW
DYGTLPVCQPDICEHSDISHG
Run BLAST on NCBI

transcript from alignment at sc0001833:2..1252-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038361 ID=TCONS_00038361|Name=TCONS_00038361|organism=Clytia hemisphaerica|type=transcript|length=1251bp|location=Sequence derived from alignment at sc0001833:2..1252- (Clytia hemisphaerica)
CACCTTCGTTGGAGAACGCTGAGCTAATCTCAACACCAGCACCAAAACAA
CAATATAATACAAATGATGTTGTATATTACAAATGTAAATTCGGGTATCA
TTTCAAAGGGAGTAGTGCCACAAAACACAAAACAAGATGTACAGAAAATG
GTAACTTCAGTCCAGCCCCTTTGAAATGTTACGGTAAAATTATTTTTTCA
AATTCTTTTTCTCATCAGTTCCTACATTTATCAAAATTGAATTGAAATTT
GGCACACTTGTGTGAATATCTGGGGGTGTTTTTTCATTTTTCAAAAATTT
TGATTTTTGCGGCCTGGGACGAGTTTTTTTGCCAAAACAATCTTTTGTGA
CTTTAATAATGAGTTTTAAAATTAGTTTTTTTTGCTACAATCAGGCCTTT
GAATAATTTGAAGCGATTGAAGTTGAGCCTTAGTGCGTTGCGTACATTCA
GCTATATTAGAACCCCATAGTACTAAAAGGTTTTTTAATATTTTGGGTTT
ATGTCTGATATTTTAACCCCCTTACAATTATACAGTTTTTTGTAGATATT
TTTTAATCTTTATAGATTTGTGTGACAACCGTTGTCAAAATGATGCTTTT
TGTAATCAAGGAAGATGTAGTTGCGATCAAAATCATATTGGAGTCAGCTG
TGAAATGAGTATGTGTCTTTCTTGTGAACTTTAGTATCTGGTGTTTTACT
TTTTCCCTTATTTTATTATTTTTCATCTTTAGATTTATTGTAGAAAGCGA
TTTTTTATTTTTATCTTTCAGGAATTTGCAAATTACCATCCGTTCTACAT
GGCACAGTGAAACAGGTCAATCCCTTAAACGTGGACGGCAAACCTGGTTG
GGTCCGTGAAGGCGCCAGCATATTTATTAAATGTGACAAAGGCTTTTCTA
TCAAGAGGGGAAAGAAGTTTTCACGTTGTCACCCTGGATTAGGATGGGAT
TATGGTACCCTCCCTGTCTGTCAACGTAAGCAAACTTTCACTAGATGTTT
TTTTATAAGATTAGCTCTATCAATTATTGGTTTAGTGAACAAATCAACAC
AGAAAGTGCCCGATACCAAAGAGTGCGTTTCCATTAAAATCTTACAAGAC
GAGTTGCAAATTTACAAATTTACATTACTCGGGAGTTTCATGCTCCTAGC
AATCGTCAGATGTGAAAGTTAAAAAACAAAATTCATTCATTCATGGAATA
TTTCTTCTTTTTTCAGCTGACATATGTGAGCATAGCGACATATCGCATGG
T

Coding sequence (CDS) from alignment at sc0001833:2..1252-

>TCONS_00038361 ID=TCONS_00038361|Name=TCONS_00038361|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at sc0001833:2..1252- (Clytia hemisphaerica)
CTGACATATGTGAGCATAGCGACATATCGCATGGTGAATTTGCAAATTAC
CATCCGTTCTACATGGCACAGTGAAACAGGTCAATCCCTTAAACGTGGAC
GGCAAACCTGGTTGGGTCCGTGAAGGCGCCAGCATATTTATTAAATGTGA
CAAAGGCTTTTCTATCAAGAGGGGAAAGAAGTTTTCACGTTGTCACCCTG
GATTAGGATGGGATTATGGTACCCTCCCTGTCTGTCAACATTTGTGTGAC
AACCGTTGTCAAAATGATGCTTTTTGTAATCAAGGAAGATGTAGTTGCGA
TCAAAATCATATTGGAGTCAGCTGTGAAATGACCTTCGTTGGAGAACGCT
GAGCTAATCTCAACACCAGCACCAAAACAACAATATAATACAAATGATGT
TGTATATTACAAATGTAAATTCGGGTATCATTTCAAAGGGAGTAGTGCCA
CAAAACACAAAACAAGATGTACAGAAAATGGTAACTTCAGTCCAGCCCCT
TTGAAATGTTACGCTGACATATGTGAGCATAGCGACATATCGCATGGTGA
ATTTGCAAATTACCATCCGTTCTACATGGCACAGTGAAACAGGTCAATCC
CTTAAACGTGGACGGCAAACCTGGTTGGGTCCGTGAAGGCGCCAGCATAT
TTATTAAATGTGACAAAGGCTTTTCTATCAAGAGGGGAAAGAAGTTTTCA
CGTTGTCACCCTGGATTAGGATGGGATTATGGTACCCTCCCTGTCTGTCA
ACATTTGTGTGACAACCGTTGTCAAAATGATGCTTTTTGTAATCAAGGAA
GATGTAGTTGCGATCAAAATCATATTGGAGTCAGCTGTGAAATGACCTTC
GTTGGAGAACGCTGAGCTAATCTCAACACCAGCACCAAAACAACAATATA
ATACAAATGATGTTGTATATTACAAATGTAAATTCGGGTATCATTTCAAA
GGGAGTAGTGCCACAAAACACAAAACAAGATGTACAGAAAATGGTAACTT
CAGTCCAGCCCCTTTGAAATGTTACGCTGACATATGTGAGCATAGCGACA
TATCGCATGGTGAATTTGCAAATTACCATCCGTTCTACATGGCACAGTGA
AACAGGTCAATCCCTTAAACGTGGACGGCAAACCTGGTTGGGTCCGTGAA
GGCGCCAGCATATTTATTAAATGTGACAAAGGCTTTTCTATCAAGAGGGG
AAAGAAGTTTTCACGTTGTCACCCTGGATTAGGATGGGATTATGGTACCC
TCCCTGTCTGTCAACATTTGTGTGACAACCGTTGTCAAAATGATGCTTTT
TGTAATCAAGGAAGATGTAGTTGCGATCAAAATCATATTGGAGTCAGCTG
TGAAATGACCTTCGTTGGAGAACGCTGAGCTAATCTCAACACCAGCACCA
AAACAACAATATAATACAAATGATGTTGTATATTACAAATGTAAATTCGG
GTATCATTTCAAAGGGAGTAGTGCCACAAAACACAAAACAAGATGTACAG
AAAATGGTAACTTCAGTCCAGCCCCTTTGAAATGTTACGCTGACATATGT
GAGCATAGCGACATATCGCATGGTGAATTTGCAAATTACCATCCGTTCTA
CATGGCACAGTGAAACAGGTCAATCCCTTAAACGTGGACGGCAAACCTGG
TTGGGTCCGTGAAGGCGCCAGCATATTTATTAAATGTGACAAAGGCTTTT
CTATCAAGAGGGGAAAGAAGTTTTCACGTTGTCACCCTGGATTAGGATGG
GATTATGGTACCCTCCCTGTCTGTCAACATTTGTGTGACAACCGTTGTCA
AAATGATGCTTTTTGTAATCAAGGAAGATGTAGTTGCGATCAAAATCATA
TTGGAGTCAGCTGTGAAATGACCTTCGTTGGAGAACGCTGAGCTAATCTC
AACACCAGCACCAAAACAACAATATAATACAAATGATGTTGTATATTACA
AATGTAAATTCGGGTATCATTTCAAAGGGAGTAGTGCCACAAAACACAAA
ACAAGATGTACAGAAAATGGTAACTTCAGTCCAGCCCCTTTGAAATGTTA
CG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022967XLOC_022967Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038361-exon-sc0001833-1575043694:1070..1252TCONS_00038361-exon-sc0001833-1575043694:1070..1252Clytia hemisphaericaexon
TCONS_00038361-exon-sc0001833-1575043694:595..687TCONS_00038361-exon-sc0001833-1575043694:595..687Clytia hemisphaericaexon
TCONS_00038361-exon-sc0001833-1575043694:278..481TCONS_00038361-exon-sc0001833-1575043694:278..481Clytia hemisphaericaexon
TCONS_00038361-exon-sc0001833-1575043694:2..36TCONS_00038361-exon-sc0001833-1575043694:2..36Clytia hemisphaericaexon
TCONS_00038361-exon-sc0001833-1510915933:1070..1252TCONS_00038361-exon-sc0001833-1510915933:1070..1252Clytia hemisphaericaexon
TCONS_00038361-exon-sc0001833-1510915933:595..687TCONS_00038361-exon-sc0001833-1510915933:595..687Clytia hemisphaericaexon
TCONS_00038361-exon-sc0001833-1510915933:278..481TCONS_00038361-exon-sc0001833-1510915933:278..481Clytia hemisphaericaexon
TCONS_00038361-exon-sc0001833-1510915933:2..36TCONS_00038361-exon-sc0001833-1510915933:2..36Clytia hemisphaericaexon
TCONS_00038361-exon-sc0001833-1491911889:1070..1252TCONS_00038361-exon-sc0001833-1491911889:1070..1252Clytia hemisphaericaexon
TCONS_00038361-exon-sc0001833-1491911889:595..687TCONS_00038361-exon-sc0001833-1491911889:595..687Clytia hemisphaericaexon
TCONS_00038361-exon-sc0001833-1491911889:278..481TCONS_00038361-exon-sc0001833-1491911889:278..481Clytia hemisphaericaexon
TCONS_00038361-exon-sc0001833-1491911889:2..36TCONS_00038361-exon-sc0001833-1491911889:2..36Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038361-proteinTCONS_00038361-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001833supercontigsc0001833:2..1252 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.63755	6.61478	2.16486	3.48723	23.7033	8.90867	13.5334	18.8174	15.4613	17.5864	15.426	12.0182	21.4882	15.1021	8.34337	8.89507	6.9977	10.3683	15.0001	18.9607	16.5178	14.7777	12.8742	11.9678	31.0834	29.8495	19.0302	24.225	12.2134	16.3382
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000436Sushi_SCR_CCP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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