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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038342 ID=TCONS_00038342|Name=TCONS_00038342|organism=Clytia hemisphaerica|type=transcript|length=221bp
CAGGAATGTTCTGGTGGACAAACCAAAAGACCCTTCATCGCGATGGTCTT
CGGAAAGTAATCATTCACCACAGTTCATCACGATGAAACTGAGGCAACCA
GCAGTTGTGAACAGTATCACCTTCGGAAAGTATGAGAAAGGTCACGTGTG
TAACATGAAGAAATTCTTAGTGTATGGGGGCATCAATGAAAATCACATGA
TCGAATTGTTATCAAGGTACA Run BLAST on NCBI transcript from alignment at sc0001830:37203..39260- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038342 ID=TCONS_00038342|Name=TCONS_00038342|organism=Clytia hemisphaerica|type=transcript|length=2058bp|location=Sequence derived from alignment at sc0001830:37203..39260- (Clytia hemisphaerica)
CAGGAATGTTCTGGTGGACAAACCAAAAGACCCTTCATCGCGATGGTCTT
CGGAAAGTAATCATTCACCACAGGTATCTACATCATGTTTCAGGTTGAAT
ATTCGTGAATTTGAGAGCACGTTCACACACTACGGTTCCGTTTCGCTCCG
AAGCGAAATGAAGCCATTCTATTGGTTAAATTCAAGATTTACATCAGTTC
CAACTAATAGAATGGCTTCATTTCGTTTCGGAGCGAGACAGAACCGTTAC
ATGCGAACATGTCTGAGAGAGTATTACATTTCCTGTCAACAAAACCTTTG
AAAAAAGGAAAAACTTTGCTTGCGATTTTCAGGTTTAGTTTCTTAATGAA
CAGAACTACTTCTTCTTCCAAAGCTTTTGCCGGCGAAACGTTTTGCCCCG
AGGACGCACGGGCAAAATAAAGATACTCCTTACCTTTTGAATTATAAGTA
ATCATAGTTAATTGAAGTGTATATGACTTGTTTGATATTCATAAAGACTT
CCGTGGCTAATTACCTGTGGTTATTTAAATCATCCTTTTTGGTGAGACAA
GAGTATGTATAAATAAAACCGCTCGTTAACGTCATTCTCATCTGACTTCA
TAATTTTATACCAATTTTTAGAGATGAGTTGAGAAAAAAATTAAATTAAA
CGTTATTTAGAGTTTGAATGTACCAGGGGTGTAAAAATTGTTTAATACCC
AAACTATAAACCATTCAGTTACCATGCCAGCCTACGCATTGCGAAAGACT
GAAGTACAGTGGTTATTGCTTTTTTTTGATAGCCTCACGTATGAATTCTG
GCGAATTCTAGATTCTAGGCCAATGAATTCTTAAAGTCTAGTGTATTGAT
TAGCGTGAATTTGTTCTTGATGCGGTGAACTGAACTTTTAGACCGGCGAA
TTGTAATTTTTCCGGTGAAATTTGCCCTTTGCCGGGCCTAAATAAGACCC
TTGAAGGTAAAAAAAAGAAGCATGTAGCACCAACAATTGAACTTTTTAAA
GCGCTTAACACGGTAACACTTTAGGAAATCGTAAATCTCTAATTCTCACT
TTTTTTTGTACTGAGGATGGCTCTCAGTTGAGAAACGAAACGTATATATA
CAAATGAATTTTAGAAAAATGAACAAGAAGTTTCTGTTAATAAACACTTT
TTTACTAAAGATACAGTATATCAAAAGATGTATCAAAAGATGTATCAAAA
GATTGATTTGTTTAACCCTAAGAAGTAAAGATGATACATAAAAANAAAAG
ATGTATCAAAAGATGTATCAAAATATTGTAAAGATGATACATAAAAGGCT
CATTTTTCCAGTCTTAGATTTTTGATTGTTATAACATGCATATTTCTAAT
CACCTTGGGGTGATGAAGACCGGAAATTAATTTACTTTTTTCATTACAGA
GGCTTTCTAAATGATGAATAGGAAACTAACCATCATTTTTCAAATTCCAA
ACTTTGTTGTCGTTAGCAACCGTCGCCTCCATTAACAAGGCTATATGAAA
AATGACGAGCTCTTATGGGTTTTCCCATTAACTGGACATTTAAAACTTGA
GTCATGTTCACTGCAAGCCCCCGTTTAGAAAACAAAAAATGCATCCTTGG
AATTTGACTTTTAGCTCCTTTTGCCTAAATTTCGCTTCAAATGCCTTCAA
AATGTATACCGGACCGCTTTAAAAATACCTTCAAAATGTATACCAATCGA
CGCAGAATTTTATTTTATAAGTTTCTGTATCAAACTTTTGGTCATTTATG
GTCTCCTATTTTGTCTTAATTATATTGATCATAAAAAAGAATCTTTAGTT
TTGGCTCCCAAAGTTGAATTTGAACTGAAAAGCTCATCAGTGACTGATGT
ACATTAAAGTTTCTACTGATGAGACCCTACCTACGTTTCCCCCCTTTTTC
TCGTTTTTAGTTCATCACGATGAAACTGAGGCAACCAGCAGTTGTGAACA
GTATCACCTTCGGAAAGTATGAGAAAGGTCACGTGTGTAACATGAAGAAA
TTCTTAGTGTATGGGGGCATCAATGAAAATCACATGATCGAATTGTTATC
AAGGTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038342-exon-sc0001830-1575043694:39188..39260 | TCONS_00038342-exon-sc0001830-1575043694:39188..39260 | Clytia hemisphaerica | exon |
| TCONS_00038342-exon-sc0001830-1575043694:37203..37350 | TCONS_00038342-exon-sc0001830-1575043694:37203..37350 | Clytia hemisphaerica | exon |
| TCONS_00038342-exon-sc0001830-1510915933:39188..39260 | TCONS_00038342-exon-sc0001830-1510915933:39188..39260 | Clytia hemisphaerica | exon |
| TCONS_00038342-exon-sc0001830-1510915933:37203..37350 | TCONS_00038342-exon-sc0001830-1510915933:37203..37350 | Clytia hemisphaerica | exon |
| TCONS_00038342-exon-sc0001830-1491911889:39188..39260 | TCONS_00038342-exon-sc0001830-1491911889:39188..39260 | Clytia hemisphaerica | exon |
| TCONS_00038342-exon-sc0001830-1491911889:37203..37350 | TCONS_00038342-exon-sc0001830-1491911889:37203..37350 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001830 | supercontig | sc0001830:37203..39260 - |
Blast
BLAST of TCONS_00038342 vs. Swiss-Prot (Human)
Match: MKLN1 (Muskelin OS=Homo sapiens GN=MKLN1 PE=1 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 8.198e-29 Identity = 48/71 (67.61%), Postives = 60/71 (84.51%), Query Frame = 2
Query: 2 RNVLVDKPKDPSSRWSSESNHSPQFITMKLRQPAVVNSITFGKYEKGHVCNMKKFLVYGGINENHMIELLS 214
N+LVDKP D SSRWSSESN+ PQ++ +KL +PA+V +ITFGKYEK HVCN+KKF V+GG+NE +M ELLS
Sbjct: 33 ENILVDKPNDQSSRWSSESNYPPQYLILKLERPAIVQNITFGKYEKTHVCNLKKFKVFGGMNEENMTELLS 103
The following BLAST results are available for this feature:
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