TCONS_00037954 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037954
Unique NameTCONS_00037954
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037954 ID=TCONS_00037954|Name=TCONS_00037954|organism=Clytia hemisphaerica|type=transcript|length=220bp
AGGATGAACGTTTAAACTTGCAGCTCAGtgtcTCAGTACTAGAGCATGCT
CTTCAGTATCAAAGGCAAGCCCAAAACTAGTGGTACACAAAAGTTTGTCA
GGATCTGcgacaaaatttttgattgcCTAAATGGACAGTATCCTAACCAA
GATATGGCAACAAGAAAACCGGCAAAACCTGCTCTCAGACAGTACACAGA
AACAAAAGACAAATGttttg
Run BLAST on NCBI

transcript from alignment at sc0001746:6603..11727-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037954 ID=TCONS_00037954|Name=TCONS_00037954|organism=Clytia hemisphaerica|type=transcript|length=5125bp|location=Sequence derived from alignment at sc0001746:6603..11727- (Clytia hemisphaerica)
AGGATGAACGTTTAAACTTGCAGCTCAGGTAACTTACAGTATATGGCCCC
CAAAACGGAGACGGCCCCCAAAACGGAGGTCGTCGTTAAAATGAGGATTT
TGACCTGTAGATTTATCAGAATTAAACGATTTTTTTTATTTTGAAAGAAT
GATGGTCATACTTAAAAATTAGCACGTTTTTGAGATACATCTGTGACTTT
AGAGGATGGGTGAAAGATATAGCATCTTAAAGGTCAACCAGTATTTTGGT
ACCAGCATTGATAAAACCGAAAATTCTAAATATGAGAAACAGCAAAAAAT
CTTGGAATTCCATTCCTATCAGCTTGAAATAATAGTTAATAACAAAAAAA
TAATATTACATATAAAAATTTTCGCTGAATCAGCAAAAACGGCAAATTCT
GTCATTTTTTTGCAAAATGTCGGAGAAAAATACCTTTAAAGCTTAATATT
TTCAGTTTTGGTTAAGCCGTTTTTCTAAAATTTTCACAGCACATTCCATA
CATGAGTGGAACTATTTTCAAAAGAGATTGGTTTTCAAAAACTTGATTAA
GACGTTGTTAAATCAAAATCGTCATTTTGAAAATTTCTAAATTTTGAGTT
TGGACTTTGCATCATCGAAAATCTTGAAATATTTAATAAAAATCATAAAT
TTTACATCCATCGGGTCGTAAATTCAAGGGAAAACACAAATATGTTCATA
GTTTCTCCCCATATTATCACTGGGCTATATAATTTGATTTTAACTACACG
TACGTTTTGAGGGCCCCAAACCTCCGTTTTGACAACCAGGGGTGTACTGT
AAAAATTTTATCAAACAAATTTGCCCAAAACCTTCTAAATCATATTTCAA
AACTATGGTCAAAATTTTGAATTCATATCTTAAAGATATCTCGAGAAATC
GGTAAAATAAGCTACCTATCTTTAAGCAATTGAAATATATTGTTGAAATT
GAAAATTTTGAAAAAGAACTTCTAGGAAATAAAATAAAGATGTTAAAAGT
TTTCATGCAGTAAAAATGTTTGTAAAATCTCTTTTCCTCTAGATTTGAGA
AAAATTTCAAATTTTATCGACGTTTTGGGGGCCACATACTGTAGATGATT
ACCATATTAACTTTAAAATTTTGCTTATGTTATCTAATCATACAGTTATA
CAACAGTTTATCGTTTTTTATATTTTCCTTCTTATTTTTGACCATGCCTG
AGAATTACGTCTGTCTGAAATAAAATGACTTTTTTATGACAATAAAAATC
CCATGATATGATATTATGTATTGAATTAGTTTTATGACTTTGAAGTAATT
TTCTCTATAGCTGCTTCTAGTCTGTTCTCGATGATTTTAGTTTGATGACT
AACTTGATATAAACAGAAATTTTGAATAATTTTTCTGGGCTCAACATCAA
AACTTCTTGAGTGACTTTTCCAGCTGTGAAACAAAAATATTCAAATATTG
AATGTTTGGATGGTAACAAAGACTCTAGCTTATTTTTAGTATTTGTCCTG
GATTCCTTTTGAATGTTACTTCGTTTTTAATTTCAGTGTCTCAGTACTTG
AGTCGTAAATGCTCTTCAGTATCAAGGCAAAAACTAGAGGTACACAAAGG
TTTGTCAGGATCTTCGACAAAATTTTTTGATTGCCTAAATGGACATGCCT
AACCCAGATATGGCAACAAGAAAACCCTCTCTCGGACAGCACACAGAAAC
AAAAGACAAACGTTTTGAGGTAATTTTTATCCTATATTCTTCAATGGGAT
TAGTTTTTGTAGGTATTCTCGCTAGCTGCTAGCTCTTTTCAAGGAATAGG
TGTTACATTATTATCCAATTCTACTCCATACAATATGTAAAATGAAATAC
ATCGCATGGTTTTATAGAAAAGACTCAAGCTGTCAAAGAAAACAGCAGCT
ATTTTTTGATTTGTCTCTCTGCCCGTTGTACTTTCGTTTTCAAGCACCTT
TTCACGGCGTCGATAGTATCTTTTTGAATGAAACACCGATTGTTTCAATT
TAGTCAATTTAGCCAAAGAGATAGAAAATAGAGGAGGTTGCACGCAACTG
CTTTAAAGCCGGGCGACTCTTGTTTTCTATTCAATTTCCTTTGTTTTGCA
ACAAAGAAAAATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CTAGGTAAAGTCTGAGAATTAGGTTTGTCTGAAATAAAATGGCCTTTTTA
TGACAATAAAAATCCCATGATATGTATTCAGGTATTCAGTTGTTGTCAAT
GAGATTGAAATGACTATAGCTACAAGTCTGGTCTTGATAATTTTAGTTTG
ATGACTAGCTTGATATAAACAGAAATTTTGAATAATTTTTCTGGGCTCAA
CATCGAAACTTCTTGAGTGGTTTTTTCAGCTGTGAAACACAAATATTGAA
TGTTTGGATGGTGACAAAGACTCTAGCTTATTTTCATTTTTTGTCCTGGA
TTCCTTTTGAAAGTTACTTCTTTTTTATTTTAGTGTCTCAGTACTAGAGC
ATGCTCTTCAGTATCAAAGGCAAGCCCAAAACTAGTGGTACACAAAAGTT
TGTCAGGATCTGCGACAAAATTTTTGATTGCCTAAATGGACAGTATCCTA
ACCAAGATATGGCAACAAGAAAACCGGCAAAACCTGCTCTCAGACAGTAC
ACAGAAACAAAAGACAAATGTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022640XLOC_022640Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037954-exon-sc0001746-1575043694:11700..11727TCONS_00037954-exon-sc0001746-1575043694:11700..11727Clytia hemisphaericaexon
TCONS_00037954-exon-sc0001746-1575043694:6603..6794TCONS_00037954-exon-sc0001746-1575043694:6603..6794Clytia hemisphaericaexon
TCONS_00037954-exon-sc0001746-1510915933:11700..11727TCONS_00037954-exon-sc0001746-1510915933:11700..11727Clytia hemisphaericaexon
TCONS_00037954-exon-sc0001746-1510915933:6603..6794TCONS_00037954-exon-sc0001746-1510915933:6603..6794Clytia hemisphaericaexon
TCONS_00037954-exon-sc0001746-1491911889:11700..11727TCONS_00037954-exon-sc0001746-1491911889:11700..11727Clytia hemisphaericaexon
TCONS_00037954-exon-sc0001746-1491911889:6603..6794TCONS_00037954-exon-sc0001746-1491911889:6603..6794Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001746supercontigsc0001746:6603..11727 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.263781	1.25338	0	0	1.70892	0	2.87075	5.07986	0.388152	6.27328	5.62097	0	1.75029	1.41847	0	0	0	1.50854	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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