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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037930 ID=TCONS_00037930|Name=TCONS_00037930|organism=Clytia hemisphaerica|type=transcript|length=1266bp
CATATAAGGCTTTTCTTTTCTGTTTATGATTGATATATTACTTGAATTGC
ATTTTAATAGAACAGGCACGCAAAAgggacagtaaaaatgtccaaCTTTT
TATCTGTATATTATGGTGTTGCTTTTCTTGTTTTGGTTATTGTTATTGTT
AATGGCGGATTTTTTGGATATATTCACAACCCTGCTGAAGCATGTTTCGT
CACTGGAGTGTATATTGTGTTCCATTTAGTTGATGGAGTCTTTGCATTTT
CTTGTCGCCACGAAACTAATTTAAAATGGGAACGTTTGAAGTTCCTGCAA
GGGCagttttatttGGCTTTGCTTGGAACCCTTTGTATTGACTCGTCCAT
TATAAAATCTATTTTCGGAGCATGGGCTGTGTTGTCATTCGGTCACACAG
TTATTGCAGCCATTATGCTATATCGTGATGACAGTTTAAGATTAACTTTT
GGAGGAAGCCATGAAAGAAAGATTGCTTGGGAagacaaaatcaaacaaaa
tataCGAGCAGCGCCTGAAGTTATAACAAATTGTGAAGTGAGAGAACCAA
AACCGATCtggaaattttgtaaaacaagaaaaattatttGGAGAGAAAAT
AAGACTTACAAATATAAACATTGGATTGATTTGAGCCTGGTTGTTTTGTT
TaagaatattgaaaaggagcAGAATATTCAAAAGATTGAATTAGATATTC
AATTTGATGACGAGGAAACAGAAAAATCATATCAACGACATGTTCAAAAT
CTTTTGGACGAGTTACCTGAAATGTGTCGATATGGTGTGATCGAAACAAA
ACGCATAATCAAAGTGGATGGAATCAACATTGACAGAAACATTGTCATGA
ATCTACATTCCCCTGGTCTTGAAGAGCTTCTAGAAAAGCATCCTTGGTTA
GTGGTTTTGTCTTTGCCTTTCAGCATCCTAAAAATCATCGAATGGTTAAT
CGTTAGAATGGATATTGAACCCTTTTTACAGAAAGTGACCATCAGAAAAG
TAGTTTCAAACAAAGATATTGAGGTCATATAAACCTTACTTAACTTCACG
TCAAGTATTTTGCTTCGACAAATGGTAAAAATATAGAATAGATTAACATA
TCTTTTTTATTACCTGAATATTATATAtcacgtttttataagcatgataa
atttttttttatcattcacTTGCTTACCTATTCTAGAAGAATGTGGTTTA
TGTGCTCATTAAGTTCATCAATTATTAACGTATATTTCTCAATTTGCTAA
CACAACAGAATGAAAG Run BLAST on NCBI protein sequence of TCONS_00037930-protein >TCONS_00037930-protein ID=TCONS_00037930-protein|Name=TCONS_00037930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MSNFLSVYYGVAFLVLVIVIVNGGFFGYIHNPAEACFVTGVYIVFHLVDG
VFAFSCRHETNLKWERLKFLQGQFYLALLGTLCIDSSIIKSIFGAWAVLS
FGHTVIAAIMLYRDDSLRLTFGGSHERKIAWEDKIKQNIRAAPEVITNCE
VREPKPIWKFCKTRKIIWRENKTYKYKHWIDLSLVVLFKNIEKEQNIQKI
ELDIQFDDEETEKSYQRHVQNLLDELPEMCRYGVIETKRIIKVDGINIDR
NIVMNLHSPGLEELLEKHPWLVVLSLPFSILKIIEWLIVRMDIEPFLQKV
TIRKVVSNKDIEVI Run BLAST on NCBI transcript from alignment at sc0001738:28973..31348+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037930 ID=TCONS_00037930|Name=TCONS_00037930|organism=Clytia hemisphaerica|type=transcript|length=2376bp|location=Sequence derived from alignment at sc0001738:28973..31348+ (Clytia hemisphaerica)
CATATAAGGCTTTTCTTTTCTGTTTATGATTGATATATTACTTGAATTGC
ATTTTAATAGAACAGGCACGCAAAAgggacagtaaaaatgtccaaCTTTT
TATCTGTATATTATGGTGTTGCTTTTCTTGTTTTGGTTATTGTTATTGTT
AATGGCGGATTTTTTGGATATATTCACAACCCTGCTGAAGCATGTTTCGT
CACTGGAGTGTATATTGTGTTCCATTTAGTTGATGGAGTCTTTGCATTTT
CTTGTCGCCACGAAACTAATTTAAAATGGGAACGTTTGAAGTTCCTGCAA
GGGCGTAAGTATACATAAAGTTTCCCTGTTTAATCTTTTCATTATTATAA
CGCTCCTAAAAGTAAATGTTACCAGATGCAGCTTTAGATTCACTGCATTT
TTTAGGCTCccaaaatatttattgttcATTGTCCTCAGGAAGAAGGCTAT
GTGCATGATGCTAAAGACCTTAATCTGGGTTCCAAAGCCGCTTGCAAAAC
TTCTTAATTTTACTGAGAGGACTGAATTGAAGTTTGCAAGGACCTTTAGT
TCATTTTACACTTTTGAATTGATCAGTCAGCAACATTATATCGAATCGGC
TAGAGCTACCATAGTGAAATTTAGTTCCCAAAACGTtatatctgaaaaaa
gaaataaactccaggtctactttaatgggatgaactttcgcagggattaa
atttcgtggatttcgcggatttggctGTCATCCgcaaaaatccgcgaaat
caagtcccaatggaaatttagAAGGGCCTCAtctgcgaaatatttctaag
CAAACCTCAagatatgtcaaataaatactttttgaatggttacttgcatc
aaagaggcgcaactGATGTTTATTTTAACAACCTACATGTATGATTTGAC
AAttaaagtcacaaaatcgtgaaaatattgacacacAATAGTGCCACCCA
CGAAATTAAGTCCCTacaagatttttgatttttgcaaataggcccaaccg
cgaaattcaatccccacaaaagtttatcccattaaagtaacaaattttat
ttcgatttttgaccACGCATTCATCTCTGGGAAGTATCTGCCGAATCAGt
gaaaaaaatagacaaaaatggTATTGAGAAGAAAATACTCTCCTTATTCA
TATATTCAACAAAGACGATGAGTTATTTGCCTTATCTTTAGTACCATTTC
CGGAGTGCTTAAATCCAATTATCTCAAACAAGAATCTTGTTTCTTATCCA
ATTTGGAAACTAAAGATGTTTTCGGAAAATTTCCAGTTTCttgttcggga
aatatttcccgttaagctAATACTTACTATTTCCGTATAATGTTGCTGAC
TGGTTGTGGATATAGGGCAGATTCATATAGGTATAATATAAAACTTCTTT
TCTCTCtgttttagagttttatttGGCTTTGCTTGGAACCCTTTGTATTG
ACTCGTCCATTATAAAATCTATTTTCGGAGCATGGGCTGTGTTGTCATTC
GGTCACACAGTTATTGCAGCCATTATGCTATATCGTGATGACAGTTTAAG
ATTAACTTTTGGAGGAAGCCATGAAAGAAAGATTGCTTGGGAagacaaaa
tcaaacaaaatataCGAGCAGCGCCTGAAGTTATAACAAATTGTGAAGTG
AGAGAACCAAAACCGATCtggaaattttgtaaaacaagaaaaattatttG
GAGAGAAAATAAGACTTACAAATATAAACATTGGATTGATTTGAGCCTGG
TTGTTTTGTTTaagaatattgaaaaggagcAGAATATTCAAAAGATTGAA
TTAGATATTCAATTTGATGACGAGGAAACAGAAAAATCATATCAACGACA
TGTTCAAAATCTTTTGGACGAGTTACCTGAAATGTGTCGATATGGTGTGA
TCGAAACAAAACGCATAATCAAAGTGGATGGAATCAACATTGACAGAAAC
ATTGTCATGAATCTACATTCCCCTGGTCTTGAAGAGCTTCTAGAAAAGCA
TCCTTGGTTAGTGGTTTTGTCTTTGCCTTTCAGCATCCTAAAAATCATCG
AATGGTTAATCGTTAGAATGGATATTGAACCCTTTTTACAGAAAGTGACC
ATCAGAAAAGTAGTTTCAAACAAAGATATTGAGGTCATATAAACCTTACT
TAACTTCACGTCAAGTATTTTGCTTCGACAAATGGTAAAAATATAGAATA
GATTAACATATCTTTTTTATTACCTGAATATTATATAtcacgtttttata
agcatgataaatttttttttatcattcacTTGCTTACCTATTCTAGAAGA
ATGTGGTTTATGTGCTCATTAAGTTCATCAATTATTAACGTATATTTCTC
AATTTGCTAACACAACAGAATGAAAG Coding sequence (CDS) from alignment at sc0001738:28973..31348+ >TCONS_00037930 ID=TCONS_00037930|Name=TCONS_00037930|organism=Clytia hemisphaerica|type=CDS|length=1890bp|location=Sequence derived from alignment at sc0001738:28973..31348+ (Clytia hemisphaerica)
atgtccaaCTTTTTATCTGTATATTATGGTGTTGCTTTTCTTGTTTTGGT
TATTGTTATTGTTAATGGCGGATTTTTTGGATATATTCACAACCCTGCTG
AAGCATGTTTCGTCACTGGAGTGTATATTGTGTTCCATTTAGTTGATGGA
GTCTTTGCATTTTCTTGTCGCCACGAAACTAATTTAAAATGGGAACGTTT
GAAGTTCCTGCAAGGGCagttttatttGGCTTTGCTTGGAACCCTTTGTA
TTGACTCGTCCATTATAAAATCTATTTTCGGAGCATGGGCTGTGTTGTCA
TTCGGTCACACAGTTATTGCAGCCATTATGCTATATCGTGATGACAGTTT
AAGATTAACTTTTGGAGGAAGCCATGAAAGAAAGATTGCTTGGGAagaca
aaatcaaacaaaatataCGAGCAGCGCCTGAAGTTATAACAAATTGTGAA
GTGAGAGAACCAAAACCGATCtggaaattttgtaaaacaagaaaaattat
ttGGAGAGAAAATAAGACTTACAAATATAAACATTGGATTGATTTGAGCC
TGGTTGTTTTGTTTaagaatattgaaaaggagcAGAATATTCAAAAGATT
GAATTAGATATTCAATTTGATGACGAGGAAACAGAAAAATCATATCAACG
ACATGTTCAAAATCTTTTGGACGAGTTACCTGAAATGTGTCGATATGGTG
TGATCGAAACAAAACGCATAATCAAAGTGGATGGAATCAACATTGACAGA
AACATTGTCATGAATCTACATTCCCCTGGTCTTGAAGAGCTTCTAGAAAA
GCATCCTTGGTTAGTGGTTTTGTCTTTGCCTTTCAGCATCCTAAAAATCA
TCGAATGGTTAATCGTTAGAATGGATATTGAACCCTTTTTACAGAAAGTG
ACCATCAGAAAAGTAGTTTCAAACAAAGATATTGAGGTCATATAAatgtc
caaCTTTTTATCTGTATATTATGGTGTTGCTTTTCTTGTTTTGGTTATTG
TTATTGTTAATGGCGGATTTTTTGGATATATTCACAACCCTGCTGAAGCA
TGTTTCGTCACTGGAGTGTATATTGTGTTCCATTTAGTTGATGGAGTCTT
TGCATTTTCTTGTCGCCACGAAACTAATTTAAAATGGGAACGTTTGAAGT
TCCTGCAAGGGCagttttatttGGCTTTGCTTGGAACCCTTTGTATTGAC
TCGTCCATTATAAAATCTATTTTCGGAGCATGGGCTGTGTTGTCATTCGG
TCACACAGTTATTGCAGCCATTATGCTATATCGTGATGACAGTTTAAGAT
TAACTTTTGGAGGAAGCCATGAAAGAAAGATTGCTTGGGAagacaaaatc
aaacaaaatataCGAGCAGCGCCTGAAGTTATAACAAATTGTGAAGTGAG
AGAACCAAAACCGATCtggaaattttgtaaaacaagaaaaattatttGGA
GAGAAAATAAGACTTACAAATATAAACATTGGATTGATTTGAGCCTGGTT
GTTTTGTTTaagaatattgaaaaggagcAGAATATTCAAAAGATTGAATT
AGATATTCAATTTGATGACGAGGAAACAGAAAAATCATATCAACGACATG
TTCAAAATCTTTTGGACGAGTTACCTGAAATGTGTCGATATGGTGTGATC
GAAACAAAACGCATAATCAAAGTGGATGGAATCAACATTGACAGAAACAT
TGTCATGAATCTACATTCCCCTGGTCTTGAAGAGCTTCTAGAAAAGCATC
CTTGGTTAGTGGTTTTGTCTTTGCCTTTCAGCATCCTAAAAATCATCGAA
TGGTTAATCGTTAGAATGGATATTGAACCCTTTTTACAGAAAGTGACCAT
CAGAAAAGTAGTTTCAAACAAAGATATTGAGGTCATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037930-exon-sc0001738-1491911889:28973..29276 | TCONS_00037930-exon-sc0001738-1491911889:28973..29276 | Clytia hemisphaerica | exon |
| TCONS_00037930-exon-sc0001738-1510915933:28973..29276 | TCONS_00037930-exon-sc0001738-1510915933:28973..29276 | Clytia hemisphaerica | exon |
| TCONS_00037930-exon-sc0001738-1575043694:28973..29276 | TCONS_00037930-exon-sc0001738-1575043694:28973..29276 | Clytia hemisphaerica | exon |
| TCONS_00037930-exon-sc0001738-1491911889:30387..31348 | TCONS_00037930-exon-sc0001738-1491911889:30387..31348 | Clytia hemisphaerica | exon |
| TCONS_00037930-exon-sc0001738-1510915933:30387..31348 | TCONS_00037930-exon-sc0001738-1510915933:30387..31348 | Clytia hemisphaerica | exon |
| TCONS_00037930-exon-sc0001738-1575043694:30387..31348 | TCONS_00037930-exon-sc0001738-1575043694:30387..31348 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001738 | supercontig | sc0001738:28973..31348 + |
Blast
The following BLAST results are available for this feature:
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