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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037893 ID=TCONS_00037893|Name=TCONS_00037893|organism=Clytia hemisphaerica|type=transcript|length=1042bp
NNCACATGTCAGGAGCAAAATGAAATCTTCCAGTACGGTATCATCATTAC
TTGAGGCaccaaatgacaaaaattctttgaaacatGAAGACCATGAAAAG
GCGAATACTGTATACTTCAACGTCAATTCTGCAGTGTTTTCACAAGAGAG
CCTCCTGGGGAGCTACCGGACTTCGAGAAAAGAACTGAGTCCGTAATCGG
ATGAAATCCATACAACAAAAGAAATGATCCAGATCGAAATAAAACatcta
aatcaaaataaatcatttgGTCCTGATGGAATACATCCTAAGATGCTACT
GTCGTTATCTGACTACGTCTCTGAACCACTTGCAGTAATAATGAACCCAT
CATTAAAGGAAGGGTCTCTACCAAAGGATTGGAAAGAAGCTCACGTAATA
TCcatatataagaacaaaggtgCTCAAAATCTTGCAGTAAATTATCGACC
TGTAAGCTTGACATCAATAGTATGCAAACTGATGGATTCAATAGTGAGAA
AGCATATTATGGAGCATCTTGATCAACATCTTTTATCGAACAAGCAATat
ggttttatcaaaaatcgatcCACCGTTACGCAACTGTTGTATTACTTGGA
TACGTGCTGTGAAAGTACATCGGAGGGAAAAGGCCTTTGACACTGTACCT
CATCGTCGTTTATTCAAGAAACTATTAGCATACGGCATAGATGGTCCGAT
AATGTTTTgggtaaaatcatttttaaatggaCGAACCCAATCAGTGAAag
taaataaatcattttcgACAACGGATCACGTGGTTAGTGGTATCCCAAGG
GTAGTGTCCTTGGACCGTTATTGTTCGTTCTTTACATCAACGATCTTCCT
GAAAGAGTGATATCATCATTTATACTcctttttgctgatgacaccaAAAT
CTTNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGCAGGTAAAGAAGGCAAA
TTCAATACTAGGAGTGATTAACAGGAGCTTTGAACATCTGAATCCATCCA
TCTTCCTAGTACTATATACTTCGTTTGTCCGTCCGTACTTGG Run BLAST on NCBI protein sequence of TCONS_00037893-protein >TCONS_00037893-protein ID=TCONS_00037893-protein|Name=TCONS_00037893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MIQIEIKHLNQNKSFGPDGIHPKMLLSLSDYVSEPLAVIMNPSLKEGSLP
KDWKEAHVISIYKNKGAQNLAVNYRPVSLTSIVCKLMDSIVRKHIMEHLD
QHLLSNKQYGFIKNRSTVTQLLYYLDTCCESTSEGKGL Run BLAST on NCBI transcript from alignment at sc0001732:1071..2112 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037893 ID=TCONS_00037893|Name=TCONS_00037893|organism=Clytia hemisphaerica|type=transcript|length=1042bp|location=Sequence derived from alignment at sc0001732:1071..2112 (Clytia hemisphaerica)
CCAAGTACGGACGGACAAACGAAGTATATAGTACTAGGAAGATGGATGGA
TTCAGATGTTCAAAGCTCCTGTTAATCACTCCTAGTATTGAATTTGCCTT
CTTTACCTGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNAAGATTTtggt
gtcatcagcaaaaaggAGTATAAATGATGATATCACTCTTTCAGGAAGAT
CGTTGATGTAAAGAACGAACAATAACGGTCCAAGGACACTACCCTTGGGA
TACCACTAACCACGTGATCCGTTGTcgaaaatgatttatttactTTCACT
GATTGGGTTCGtccatttaaaaatgattttacccAAAACATTATCGGACC
ATCTATGCCGTATGCTAATAGTTTCTTGAATAAACGACGATGAGGTACAG
TGTCAAAGGCCTTTTCCCTCCGATGTACTTTCACAGCACGTATCCAAGTA
ATACAACAGTTGCGTAACGGTGgatcgatttttgataaaaccatATTGCT
TGTTCGATAAAAGATGTTGATCAAGATGCTCCATAATATGCTTTCTCACT
ATTGAATCCATCAGTTTGCATACTATTGATGTCAAGCTTACAGGTCGATA
ATTTACTGCAAGATTTTGAGcacctttgttcttatatatgGATATTACGT
GAGCTTCTTTCCAATCCTTTGGTAGAGACCCTTCCTTTAATGATGGGTTC
ATTATTACTGCAAGTGGTTCAGAGACGTAGTCAGATAACGACAGTAGCAT
CTTAGGATGTATTCCATCAGGACcaaatgatttattttgatttagatGTT
TTATTTCGATCTGGATCATTTCTTTTGTTGTATGGATTTCATCCGATTAC
GGACTCAGTTCTTTTCTCGAAGTCCGGTAGCTCCCCAGGAGGCTCTCTTG
TGAAAACACTGCAGAATTGACGTTGAAGTATACAGTATTCGCCTTTTCAT
GGTCTTCatgtttcaaagaatttttgtcatttggtGCCTCAAGTAATGAT
GATACCGTACTGGAAGATTTCATTTTGCTCCTGACATGTGNN Coding sequence (CDS) from alignment at sc0001732:1071..2112 >TCONS_00037893 ID=TCONS_00037893|Name=TCONS_00037893|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at sc0001732:1071..2112 (Clytia hemisphaerica)
TCAAAGGCCTTTTCCCTCCGATGTACTTTCACAGCACGTATCCAAGTAAT
ACAACAGTTGCGTAACGGTGgatcgatttttgataaaaccatATTGCTTG
TTCGATAAAAGATGTTGATCAAGATGCTCCATAATATGCTTTCTCACTAT
TGAATCCATCAGTTTGCATACTATTGATGTCAAGCTTACAGGTCGATAAT
TTACTGCAAGATTTTGAGcacctttgttcttatatatgGATATTACGTGA
GCTTCTTTCCAATCCTTTGGTAGAGACCCTTCCTTTAATGATGGGTTCAT
TATTACTGCAAGTGGTTCAGAGACGTAGTCAGATAACGACAGTAGCATCT
TAGGATGTATTCCATCAGGACcaaatgatttattttgatttagatGTTTT
ATTTCGATCTGGATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037893-exon-sc0001732-1491911889:1071..2112 | TCONS_00037893-exon-sc0001732-1491911889:1071..2112 | Clytia hemisphaerica | exon |
| TCONS_00037893-exon-sc0001732-1510915933:1071..2112 | TCONS_00037893-exon-sc0001732-1510915933:1071..2112 | Clytia hemisphaerica | exon |
| TCONS_00037893-exon-sc0001732-1575043694:1071..2112 | TCONS_00037893-exon-sc0001732-1575043694:1071..2112 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001732 | supercontig | sc0001732:1071..2112 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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