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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037659 ID=TCONS_00037659|Name=TCONS_00037659|organism=Clytia hemisphaerica|type=transcript|length=1554bp
CAATATCACAATCATTACGGACTGCTTTCACTAAACTCAAGAGACAGCTG
TGCCGCCACCAATGTTACCGATTGTTACCATTATGAGCTGTTCAGGGAGA
GCGTGTTGCTTGAGAgtcgtgaagaagaaaataagaaccaTCTTTTTTAT
TAAAGTTAACAATTTATAAAATGATATACGTTACGAAATAAAtacaacat
taaaaaaagtggccaaaaataaaaatgaggccATTGATCATTACAATCAG
TATAGACTGTAACTTCGttggtctttcttttctttatgggCGTTGTTTTC
ATTCTCTCACGCACATACACCACTGTCTCTGTgccgccccggtggagctt
tttccttcagtgtggatgaaaatttctatctaatCGTAGTGTCCAGACGA
TTTTCAGCTAAGTTTTCTAGTAGTGGGGCGGGGGGCTCCACCGGATCTCT
GACACAAGGGTATTCTCCAGAGGGTTTCAATCATATTCTCGCCCTCGCCA
ATGAATGTGTATCATTATGATATTACTACAACGttggaaaatgtggaaaa
tacacGTCTCACCTGGATATATGATCGCAATTGTGttcccataaaaaatg
aaaactgaaataaaaaagaaaaagaagaaacggcGAGAGAAGAATTGTTG
TAATTCATCCTATCTTGACCACTGGAGGACTAAAAATAAGTATGGAGTGG
CGGGATTGGGATTCTGAAACACCGTTACCTCACAATACCCGTATTCTAAG
TTTCGTATGTTCCGCATTCGAAAATCGAAAGTATGGCCGCGCGGATAAAC
TCCTTCGCTACAGCCTCACGCCAGCATAAGAAGGAACAATTCTTgttttc
caaatcaaaatacaaagaCAATAAAGAAGGATTACCTGGTATATCttatt
gaatttgattcatCTTCTTGATATTGattctaaacaaaaagaatGGTGTT
AATTGATTGTAAAACCATGCAttgcaaaatcttaaattttccaccctgtg
caaatgcacagagttccaaaaacCCAGTGTATTTGCACCGGGTTTTCGCG
CTTCTTTCGATTTCGACCCGTTGCAAATGCAACGTAGCGGACtccgtgca
aatgcaaggatatTTGCCTGACTGTTCGACGACCCTTCGACAATCTTTCT
TCGACTACCCTATATGCTACATTCAActgtaccgtattacttcgaacaAA
CGCCCGTGGCGtttatttaactttttcgattttaggaggaACATTTATTc
aaaggggcgtttatttgagggggcgtctattgaataattttccatttatt
ttaggacaggcgtttattcgagggggcgtttattcgaagtaatacagtGT
ATTACGTATTCGTTTTACATATTTCCTTTCAGTTTCCCACACTAAGAAGA
AGATTCCTGTGAAAGACCAGAACTCCGGGTAGTTAAAAAACGAGCTTCGA
AAAATTATTAGCCCTACCCAGCAGGCTCTCCCGTGTGCACAGTACAATGT
ACGGCCTGGTTCGATTAAAATTTGCTGTTGAAATAAACGAGGGAATAAAG
AGAT Run BLAST on NCBI transcript from alignment at sc0001680:30300..32066+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037659 ID=TCONS_00037659|Name=TCONS_00037659|organism=Clytia hemisphaerica|type=transcript|length=1767bp|location=Sequence derived from alignment at sc0001680:30300..32066+ (Clytia hemisphaerica)
CAATATCACAATCATTACGGACTGCTTTCACTAAACTCAAGAGACAGCGT
AAGTTACATTGTTGTATGTATGAAACAATGATCTCATCTAGATCTATGTT
GAATTCTAGATCGATTTTTGTGCTTCCCATCAACTAGTGTGCGTTACTTG
TTACCGTAACTTCGGCAGTTTATCCACAGACTTTTGAGCGACAATCTCTT
TTTCTAGTTTCGTACCACGGATCTTCCACAGTCATaacttcaattttcat
tctttatttaGTGTGCCGCCACCAATGTTACCGATTGTTACCATTATGAG
CTGTTCAGGGAGAGCGTGTTGCTTGAGAgtcgtgaagaagaaaataagaa
ccaTCTTTTTTATTAAAGTTAACAATTTATAAAATGATATACGTTACGAA
ATAAAtacaacattaaaaaaagtggccaaaaataaaaatgaggccATTGA
TCATTACAATCAGTATAGACTGTAACTTCGttggtctttcttttctttat
gggCGTTGTTTTCATTCTCTCACGCACATACACCACTGTCTCTGTgccgc
cccggtggagctttttccttcagtgtggatgaaaatttctatctaatCGT
AGTGTCCAGACGATTTTCAGCTAAGTTTTCTAGTAGTGGGGCGGGGGGCT
CCACCGGATCTCTGACACAAGGGTATTCTCCAGAGGGTTTCAATCATATT
CTCGCCCTCGCCAATGAATGTGTATCATTATGATATTACTACAACGttgg
aaaatgtggaaaatacacGTCTCACCTGGATATATGATCGCAATTGTGtt
cccataaaaaatgaaaactgaaataaaaaagaaaaagaagaaacggcGAG
AGAAGAATTGTTGTAATTCATCCTATCTTGACCACTGGAGGACTAAAAAT
AAGTATGGAGTGGCGGGATTGGGATTCTGAAACACCGTTACCTCACAATA
CCCGTATTCTAAGTTTCGTATGTTCCGCATTCGAAAATCGAAAGTATGGC
CGCGCGGATAAACTCCTTCGCTACAGCCTCACGCCAGCATAAGAAGGAAC
AATTCTTgttttccaaatcaaaatacaaagaCAATAAAGAAGGATTACCT
GGTATATCttattgaatttgattcatCTTCTTGATATTGattctaaacaa
aaagaatGGTGTTAATTGATTGTAAAACCATGCAttgcaaaatcttaaat
tttccaccctgtgcaaatgcacagagttccaaaaacCCAGTGTATTTGCA
CCGGGTTTTCGCGCTTCTTTCGATTTCGACCCGTTGCAAATGCAACGTAG
CGGACtccgtgcaaatgcaaggatatTTGCCTGACTGTTCGACGACCCTT
CGACAATCTTTCTTCGACTACCCTATATGCTACATTCAActgtaccgtat
tacttcgaacaAACGCCCGTGGCGtttatttaactttttcgattttagga
ggaACATTTATTcaaaggggcgtttatttgagggggcgtctattgaataa
ttttccatttattttaggacaggcgtttattcgagggggcgtttattcga
agtaatacagtGTATTACGTATTCGTTTTACATATTTCCTTTCAGTTTCC
CACACTAAGAAGAAGATTCCTGTGAAAGACCAGAACTCCGGGTAGTTAAA
AAACGAGCTTCGAAAAATTATTAGCCCTACCCAGCAGGCTCTCCCGTGTG
CACAGTACAATGTACGGCCTGGTTCGATTAAAATTTGCTGTTGAAATAAA
CGAGGGAATAAAGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037659-exon-sc0001680-1491911889:30300..30347 | TCONS_00037659-exon-sc0001680-1491911889:30300..30347 | Clytia hemisphaerica | exon |
| TCONS_00037659-exon-sc0001680-1510915933:30300..30347 | TCONS_00037659-exon-sc0001680-1510915933:30300..30347 | Clytia hemisphaerica | exon |
| TCONS_00037659-exon-sc0001680-1575043694:30300..30347 | TCONS_00037659-exon-sc0001680-1575043694:30300..30347 | Clytia hemisphaerica | exon |
| TCONS_00037659-exon-sc0001680-1491911889:30561..32066 | TCONS_00037659-exon-sc0001680-1491911889:30561..32066 | Clytia hemisphaerica | exon |
| TCONS_00037659-exon-sc0001680-1510915933:30561..32066 | TCONS_00037659-exon-sc0001680-1510915933:30561..32066 | Clytia hemisphaerica | exon |
| TCONS_00037659-exon-sc0001680-1575043694:30561..32066 | TCONS_00037659-exon-sc0001680-1575043694:30561..32066 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001680 | supercontig | sc0001680:30300..32066 + |
Blast
The following BLAST results are available for this feature:
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