|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037459 ID=TCONS_00037459|Name=TCONS_00037459|organism=Clytia hemisphaerica|type=transcript|length=1520bpRun BLAST on NCBI transcript from alignment at sc0001637:8090..21196+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00037459 ID=TCONS_00037459|Name=TCONS_00037459|organism=Clytia hemisphaerica|type=transcript|length=13107bp|location=Sequence derived from alignment at sc0001637:8090..21196+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00037459 vs. Swiss-Prot (Human)
Match: RBGPR (Rab3 GTPase-activating protein non-catalytic subunit OS=Homo sapiens GN=RAB3GAP2 PE=1 SV=1) HSP 1 Score: 411.379 bits (1056), Expect = 3.413e-129 Identity = 229/513 (44.64%), Postives = 320/513 (62.38%), Query Frame = 2
Query: 8 RSSQGSPDWTCIIAGYSTGYIRMYMSNGSLLLSQFLHDGPVLNIVIRTKT--SFASSSDQVDELIILYSKAIVTIDGFSLYQSLRACRNQLAKAQASYGSESIQPPPLAYKKWKSTGQKGVTDCVSCGVTSPCFFDRLQTASVIGGQQATVKGSSPAFNRFLSTGTEPFLCYYQALEGSNQPILSDVAMAYASKLTSAVFSSVKNFTMGSGWFGGGKQAQSPEKKDVRPNVERGTSLPARFGLFDQHRITSSVKLSPIGNLAIVTDTFNRVSLVDISTGIVLRLWKGYRDAECGWIVVEEEEDQQ------------SDAPSLKRRALFVVIYAPKRGILEIYLTEHGARVGAFNVGKNCKLICPTYQCLGQIRATT-NINSNEFQQCFLLQEDGSIKTIHVPFHCSLSNVHSIRAKDAHQLKRVATSLDKSKGRANNNEEIVKTMVSIILDIQAPNMQKKAVELMMNTTGLRPKFLESSLTLICDGLQKAMNSRESVEED-LEYQAEKSDLL 1498
RSS G PDWTCI+ G+++GY+R Y NG LLL+Q L++ PVL + RT ++Q +EL ILY AIVTIDGFSL+QSLRACRNQ+AKA AS G+E+IQPPPLAYKKW + D S G+ + FD+++TAS IGG A +K S PA +++++ G+ PF ++ ALEGS QP+LS VA+A ASKLTSA+F++ SGW G + + + +P VE T L RFGL D R S+ LSP LA VTD F RV L+D++ GI +R+WKGYRDA+ GWI E+ ++ S PS R A F+VIYAP+RGILE++ T+ G RVGAFNVGK+C+L+ P Y+ +G T+ + +Q C + GS+KT++VPFH +LS+ S RAKD H +K++A L K ++ N + + + +ILDI+ P +K+A+E ++ + L L + + D L+ ESV+E L++ A K LL
Sbjct: 145 RSSTGRPDWTCIVVGFTSGYVRFYTENGVLLLAQLLNEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAAIVTIDGFSLFQSLRACRNQVAKAAAS-GNENIQPPPLAYKKWGLQDIDTIIDHASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSNPFTGFFYALEGSTQPLLSHVALAVASKLTSALFNA------ASGWLGWKSKHEEEAVQKQKPKVEPATPLAVRFGLPDSRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQTVEDLHERVPEKADFSPFGNSQGPS--RVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGYKIMGLNNVTSQSWQPQTYQICLVDPVSGSVKTVNVPFHLALSDKKSERAKDMHLVKKLAALL---KTKSPNLDLVETEIKELILDIKYPATKKQALESILASERLPFSCLRNITQTLMDTLKS--QELESVDEGLLQFCANKLKLL 643 The following BLAST results are available for this feature:
BLAST of TCONS_00037459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.