TCONS_00037430 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037430
Unique NameTCONS_00037430
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1098

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037430 ID=TCONS_00037430|Name=TCONS_00037430|organism=Clytia hemisphaerica|type=transcript|length=1098bp
AAAACACATGCCTTTCATCCAATTCGTCGGAGACCAACCAGTGTACGCGT
TCATGATGGAGCTAGAGTATGAAAACAGAGCTTTGTTTGAGAAAGTTGTT
CCCGTTCTCGCGCTATTTCATACGCAGATGTCCTTTATTAACGCGATATT
CAAGCACATAGACGGCTCAGAGATTTCAGACCTTGTTGTGAGTGCTGGCT
TGATTGCTGAAGGATCGGCCGACCAAGCATTGAAAAAGAAGCATTGCAAC
CATGCACAACGCTTGTACAAGCTGTTATATGAATCACTGGCAAATCAAAC
TTGGAGACGATGAAGGTATTGCATTTCCAAAGAATCTGAATTGTTTTATG
AACACAGTTGGAAATATTGAAATGAATCAAGAGTCTCGTTTGATTGCGTT
TGAGGCCATCATGGACGACCCTGAATTCGACACATATTTAAAAAGTCTGG
TCCGGCCTTTCACCTTGCTAGCTTTTTCATTAACCTGATGGAGATGATAG
AAATGTTATTTGACAATATAGACAACATACGCATCCACGACTGGAATAGA
TATCTTCAATCAATTCGTGCTATGATGCCATGGATGCACGCCTATGATAA
ACTATGGTAGATGATTACCGGTATTTTGGCTTGAAATGAAGAAGCTATCT
TCAGAGCACACAAAGATGATGTCCGATATATTCGCCTAATCCATGACTAC
CAACCCTTATTCCGCCCAACCACCTGATGTATGGATTGAATGCACAATGA
ACAAAGGTTTCAAATTAATATCAGGCTGGAAAAGGCGCCTCAAAAGCAAG
AAAGGACTGCTAGTCCATATCAGGAATACAAACAAAGTTAATATAGTCCG
TCATACActgaaaagttcattttcaaaTATGAAGAGTAAAGACACtcgca
aagaaaatgttaagtcaagacattcaaaagaaaaaattgctGTTCAATCG
ATCATTTCTTTGTTCAATGATTGGGAATGTAATCCGTTTGAGCATTCGCA
ATAATTACGGAAGCTACAGTCAGGAGAGCTCGCAAATATGGAACTTGTTC
ACGATTTGGGAAATGCTTCAAAAGATGGAGACGATATTGTCCAAAATT
Run BLAST on NCBI

protein sequence of TCONS_00037430-protein

>TCONS_00037430-protein ID=TCONS_00037430-protein|Name=TCONS_00037430-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MTTNPYSAQPPDVWIECTMNKGFKLISGWKRRLKSKKGLLVHIRNTNKVN
IVRHTLKSSFSNMKSKDTRKENVKSRHSKEKIAVQSIISLFNDWECNPFE
HSQ
Run BLAST on NCBI

transcript from alignment at sc0001628:28044..29783+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037430 ID=TCONS_00037430|Name=TCONS_00037430|organism=Clytia hemisphaerica|type=transcript|length=1740bp|location=Sequence derived from alignment at sc0001628:28044..29783+ (Clytia hemisphaerica)
AAAACACATGCCTTTCATCCAATTCGTCGGAGACCAACCAGTGTACGCGT
TCATGATGGAGCTAGAGTATGAAAACAGAGCTTTGTTTGAGAAAGTTGTT
CCCGTTCTCGCGCTATTTCATACGCAGATGTCCTTTATTAACGCGATATT
CAAGCACATAGACGGCTCAGAGATTTCAGACCTTGTTGTGAGTGCTGGCT
TGATTGCTGAAGGATCGGCCGACCAAGCATTGAAAAAGAAGCATTGCAAC
CATGCACAACGCTTGTACAAGCTGTTATATGAATCACTGGCAAATCAAAC
TTGGAGACGATGAAGGTATTGCATTTCCAAAGAATCTGAATTGTTTTATG
AACACAGTTGGTAAGtttcttgaatttcaaaaatatctcATGCCTAAGCC
GGGCCGTATAATATGCTGAATTACCATACATGAATCTTAACGAGATAGAC
CTTAATGTCATTAACTCTTTTTTACATTCAGGAAATATTGAAATGAATCA
AGAGTCTCGTTTGATTGCGTTTGAGGCCATCATGGACGACCCTGAATTCG
ACACATATTTAAAAAGTCTGGTCCGGCCTTTCACCTTGCTAGCTTTTTCA
TTAACCTGATGGAGATGATAGAAATGTTATTTGACAATATAGACAACATA
CGCATCCACGACTGGAATAGATATCTTCAATCAATTCGTGCTATGATGCC
ATGGATGCACGCCTATGATAAACTATGGTAGATGATTACCGGTTAGTTAC
ATTTAGTCTTGTTTAAGTTTCTTCTATGTGTTATTGCTTTTACAGTTACG
TTATAATTTAAAGAAAGCCTGTGGAACCCAGGGTATTATTTTTGCCTGTA
AGTAAATCaaaatgattattttcattCACAGGTATTTTGGCTTGAAATGA
AGAAGCTATCTTCAGAGCACACAAAGATGATGTCCGATATATTCGCCTAA
TCCATGACTACCAACCCTTATTCCGCCCAACCACCTGATGTATGGATTGA
ATGCACAATGAACAAAGGTTTCAAATTAATATCAGGCTGGAAAAGGCGCC
TCAAAAGCAAGAAAGGACTGCTAGTCCATATCAGGAATACAAACAAAGTT
AATATAGTCCGTCATACActgaaaagttcattttcaaaTATGAAGAGTAA
GTGTTAAAATTACTTCATTAATTCATCTATGGTGCGCAATCTATACGAGg
cctagacgatgctatcgtcggTAAACGCGGAAAAGAATTAGAGCgccagg
gcggtttacgggaaaaaagtggcggaaGAGTTTTggaacatctccgccac
tgcttactccacccgaatttatcacgcctctcctaaactattcccttttt
agtgatcttgtgcagacgataggatcgtctataTGAAGCCGAAATGTTTA
CAATAAAttgttatgtttttaaaaaagaaagcaaTATAGCTTTTGTGTAT
GAAACTTATCTAACAAGCCAATATGGTACGAGATCAAATTAAATGCCTCA
TATTATTTTGTATTAAACACACTTTAGGTAAAGACACtcgcaaagaaaat
gttaagtcaagacattcaaaagaaaaaattgctGTTCAATCGATCATTTC
TTTGTTCAATGATTGGGAATGTAATCCGTTTGAGCATTCGCAATAATTAC
GGAAGCTACAGTCAGGAGAGCTCGCAAATATGGAACTTGTTCACGATTTG
GGAAATGCTTCAAAAGATGGAGACGATATTGTCCAAAATT

Coding sequence (CDS) from alignment at sc0001628:28044..29783+

>TCONS_00037430 ID=TCONS_00037430|Name=TCONS_00037430|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0001628:28044..29783+ (Clytia hemisphaerica)
ATGACTACCAACCCTTATTCCGCCCAACCACCTGATGTATGGATTGAATG
CACAATGAACAAAGGTTTCAAATTAATATCAGGCTGGAAAAGGCGCCTCA
AAAGCAAGAAAGGACTGCTAGTCCATATCAGGAATACAAACAAAGTTAAT
ATAGTCCGTCATACActgaaaagttcattttcaaaTATGAAGAGTAAAGA
CACtcgcaaagaaaatgttaagtcaagacattcaaaagaaaaaattgctG
TTCAATCGATCATTTCTTTGTTCAATGATTGGGAATGTAATCCGTTTGAG
CATTCGCAATAAATGACTACCAACCCTTATTCCGCCCAACCACCTGATGT
ATGGATTGAATGCACAATGAACAAAGGTTTCAAATTAATATCAGGCTGGA
AAAGGCGCCTCAAAAGCAAGAAAGGACTGCTAGTCCATATCAGGAATACA
AACAAAGTTAATATAGTCCGTCATACActgaaaagttcattttcaaaTAT
GAAGAGTAAAGACACtcgcaaagaaaatgttaagtcaagacattcaaaag
aaaaaattgctGTTCAATCGATCATTTCTTTGTTCAATGATTGGGAATGT
AATCCGTTTGAGCATTCGCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022205XLOC_022205Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037430-proteinTCONS_00037430-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037430-exon-sc0001628-1491911889:28044..28403TCONS_00037430-exon-sc0001628-1491911889:28044..28403Clytia hemisphaericaexon
TCONS_00037430-exon-sc0001628-1510915933:28044..28403TCONS_00037430-exon-sc0001628-1510915933:28044..28403Clytia hemisphaericaexon
TCONS_00037430-exon-sc0001628-1575043694:28044..28403TCONS_00037430-exon-sc0001628-1575043694:28044..28403Clytia hemisphaericaexon
TCONS_00037430-exon-sc0001628-1491911889:28525..28784TCONS_00037430-exon-sc0001628-1491911889:28525..28784Clytia hemisphaericaexon
TCONS_00037430-exon-sc0001628-1510915933:28525..28784TCONS_00037430-exon-sc0001628-1510915933:28525..28784Clytia hemisphaericaexon
TCONS_00037430-exon-sc0001628-1575043694:28525..28784TCONS_00037430-exon-sc0001628-1575043694:28525..28784Clytia hemisphaericaexon
TCONS_00037430-exon-sc0001628-1491911889:28925..29189TCONS_00037430-exon-sc0001628-1491911889:28925..29189Clytia hemisphaericaexon
TCONS_00037430-exon-sc0001628-1510915933:28925..29189TCONS_00037430-exon-sc0001628-1510915933:28925..29189Clytia hemisphaericaexon
TCONS_00037430-exon-sc0001628-1575043694:28925..29189TCONS_00037430-exon-sc0001628-1575043694:28925..29189Clytia hemisphaericaexon
TCONS_00037430-exon-sc0001628-1491911889:29571..29783TCONS_00037430-exon-sc0001628-1491911889:29571..29783Clytia hemisphaericaexon
TCONS_00037430-exon-sc0001628-1510915933:29571..29783TCONS_00037430-exon-sc0001628-1510915933:29571..29783Clytia hemisphaericaexon
TCONS_00037430-exon-sc0001628-1575043694:29571..29783TCONS_00037430-exon-sc0001628-1575043694:29571..29783Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001628supercontigsc0001628:28044..29783 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0798149	0.0778321	0	0.0442067	0.43054	0.297691	0.307844	0.2882	0.0336293	0.333242	0	0.0797345	0.0530824	0	0.453216	0.510688	0	0.153532	0.33938	0.133176	0	0.056461	0.0915142	0.1248	0.385622	0.420638	0	0.0583998	0.0885884	0.0451288
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037430 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top