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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037435 ID=TCONS_00037435|Name=TCONS_00037435|organism=Clytia hemisphaerica|type=transcript|length=1214bp
CTCGCAGTATGAAATGACATTGgaagaaattcttcaattcTTGCGAAGCT
TTCTCAGGGAAAAATCACCCACCGAACTTTTTACCGATCTAAACCAATTA
TGCCAAGGAAGTACAGAAGAACCGTCAAATTTTCTGCTTAGAGCACTCGA
ATTAAGACAGAAAGTTTTGACCGCATCCCAAGCTGAAGGAGTTATCCGTT
ATGAGAAGGACTTGGTTCAACGAATGTTCCTGCACGCTGTGAAGACCGGT
TTAAAAGAAGGTTCCGTAAGAAGTCACATGATTCATTATCTCAACCACGA
TCAATCGCAGCCCGATGATGTTCTGTTGAGGGAGATAAATATCGCAACCT
CGGAAGAAAAAGAGCGCGAATCCAAACAACGTGCAAATAAAAGTGCCCGC
GTTGCGTCCATCGAAACCAGTGAAGGGGTTAGTCAGATTCTATCACCTCT
TCTCGAAGCCGTCACTGGAATGAAAGCTCAAATCGACGAGCTGACATCAC
GTGTTAACTCCATGCCAACAGGATCCAGTCAAGACCGACGTAATGGTAGA
TCATCCGGTTCATGGAAAAGAAAAGGTTGTAAGGATTGTACCACTAAAAA
CCGTACCAGCCAGTGCAACCATTGTTGGAAATGTGGACAGGAGGGTCATC
AATCAAAATCCTGTCAACAACAGCCAAAAGGGCAGGGGCTGGGGAGGTGA
GATGCTCGTCAGCCCATCAAGTAGAACAATCTCCTAAACTACAATGCTGT
GGTTGTGGAAAGCAATCACCTGTGATGAAAAGATGTTCCCGTTGTCAAGC
AGTGCAATACTGTAACGAATCGTGTCAACAGAAACATTTTGCTGTTCACA
AGGTACTTTGTAAAGCTATTAAAGCGATGGAAGATCGTAATGTCCAAAAT
ATCGATAAGAACTGTATTTTTCAAAGCCACCTTACACCAAAACAGAAAGT
GAAACTGGTAAATTTGGTCGGAGAAAAATGTGAAGTTGAGTGTTCGATTG
GAGGACAAATAGTAACCGCATTGTGGGATGCCGGAACACAAGTTAGCTTG
ATCGACCAATACTGGCTTGATACCAACAAAATCAAGTACGAACTTAAAAA
CTTATCTGAACTTATGAATCTAGAGATCAAAACAGCTGACGGAAAGTTAT
TACCATACGTTAGCTATACCACTGTAAATACGCATATAGGAAATGAACTT
ATTGAAATTCCGtt Run BLAST on NCBI protein sequence of TCONS_00037435-protein >TCONS_00037435-protein ID=TCONS_00037435-protein|Name=TCONS_00037435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
SQYEMTLEEILQFLRSFLREKSPTELFTDLNQLCQGSTEEPSNFLLRALE
LRQKVLTASQAEGVIRYEKDLVQRMFLHAVKTGLKEGSVRSHMIHYLNHD
QSQPDDVLLREINIATSEEKERESKQRANKSARVASIETSEGVSQILSPL
LEAVTGMKAQIDELTSRVNSMPTGSSQDRRNGRSSGSWKRKGCKDCTTKN
RTSQCNHCWKCGQEGHQSKSCQQQPKGQGLGR Run BLAST on NCBI transcript from alignment at sc0001628:18965..20178 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037435 ID=TCONS_00037435|Name=TCONS_00037435|organism=Clytia hemisphaerica|type=transcript|length=1214bp|location=Sequence derived from alignment at sc0001628:18965..20178 (Clytia hemisphaerica)
aaCGGAATTTCAATAAGTTCATTTCCTATATGCGTATTTACAGTGGTATA
GCTAACGTATGGTAATAACTTTCCGTCAGCTGTTTTGATCTCTAGATTCA
TAAGTTCAGATAAGTTTTTAAGTTCGTACTTGATTTTGTTGGTATCAAGC
CAGTATTGGTCGATCAAGCTAACTTGTGTTCCGGCATCCCACAATGCGGT
TACTATTTGTCCTCCAATCGAACACTCAACTTCACATTTTTCTCCGACCA
AATTTACCAGTTTCACTTTCTGTTTTGGTGTAAGGTGGCTTTGAAAAATA
CAGTTCTTATCGATATTTTGGACATTACGATCTTCCATCGCTTTAATAGC
TTTACAAAGTACCTTGTGAACAGCAAAATGTTTCTGTTGACACGATTCGT
TACAGTATTGCACTGCTTGACAACGGGAACATCTTTTCATCACAGGTGAT
TGCTTTCCACAACCACAGCATTGTAGTTTAGGAGATTGTTCTACTTGATG
GGCTGACGAGCATCTCACCTCCCCAGCCCCTGCCCTTTTGGCTGTTGTTG
ACAGGATTTTGATTGATGACCCTCCTGTCCACATTTCCAACAATGGTTGC
ACTGGCTGGTACGGTTTTTAGTGGTACAATCCTTACAACCTTTTCTTTTC
CATGAACCGGATGATCTACCATTACGTCGGTCTTGACTGGATCCTGTTGG
CATGGAGTTAACACGTGATGTCAGCTCGTCGATTTGAGCTTTCATTCCAG
TGACGGCTTCGAGAAGAGGTGATAGAATCTGACTAACCCCTTCACTGGTT
TCGATGGACGCAACGCGGGCACTTTTATTTGCACGTTGTTTGGATTCGCG
CTCTTTTTCTTCCGAGGTTGCGATATTTATCTCCCTCAACAGAACATCAT
CGGGCTGCGATTGATCGTGGTTGAGATAATGAATCATGTGACTTCTTACG
GAACCTTCTTTTAAACCGGTCTTCACAGCGTGCAGGAACATTCGTTGAAC
CAAGTCCTTCTCATAACGGATAACTCCTTCAGCTTGGGATGCGGTCAAAA
CTTTCTGTCTTAATTCGAGTGCTCTAAGCAGAAAATTTGACGGTTCTTCT
GTACTTCCTTGGCATAATTGGTTTAGATCGGTAAAAAGTTCGGTGGGTGA
TTTTTCCCTGAGAAAGCTTCGCAAgaattgaagaatttcttcCAATGTCA
TTTCATACTGCGAG Coding sequence (CDS) from alignment at sc0001628:18965..20178 >TCONS_00037435 ID=TCONS_00037435|Name=TCONS_00037435|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at sc0001628:18965..20178 (Clytia hemisphaerica)
TCACCTCCCCAGCCCCTGCCCTTTTGGCTGTTGTTGACAGGATTTTGATT
GATGACCCTCCTGTCCACATTTCCAACAATGGTTGCACTGGCTGGTACGG
TTTTTAGTGGTACAATCCTTACAACCTTTTCTTTTCCATGAACCGGATGA
TCTACCATTACGTCGGTCTTGACTGGATCCTGTTGGCATGGAGTTAACAC
GTGATGTCAGCTCGTCGATTTGAGCTTTCATTCCAGTGACGGCTTCGAGA
AGAGGTGATAGAATCTGACTAACCCCTTCACTGGTTTCGATGGACGCAAC
GCGGGCACTTTTATTTGCACGTTGTTTGGATTCGCGCTCTTTTTCTTCCG
AGGTTGCGATATTTATCTCCCTCAACAGAACATCATCGGGCTGCGATTGA
TCGTGGTTGAGATAATGAATCATGTGACTTCTTACGGAACCTTCTTTTAA
ACCGGTCTTCACAGCGTGCAGGAACATTCGTTGAACCAAGTCCTTCTCAT
AACGGATAACTCCTTCAGCTTGGGATGCGGTCAAAACTTTCTGTCTTAAT
TCGAGTGCTCTAAGCAGAAAATTTGACGGTTCTTCTGTACTTCCTTGGCA
TAATTGGTTTAGATCGGTAAAAAGTTCGGTGGGTGATTTTTCCCTGAGAA
AGCTTCGCAAgaattgaagaatttcttcCAATGTCATTTCATACTGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037435-exon-sc0001628-1491911889:18965..20178 | TCONS_00037435-exon-sc0001628-1491911889:18965..20178 | Clytia hemisphaerica | exon |
| TCONS_00037435-exon-sc0001628-1510915933:18965..20178 | TCONS_00037435-exon-sc0001628-1510915933:18965..20178 | Clytia hemisphaerica | exon |
| TCONS_00037435-exon-sc0001628-1575043694:18965..20178 | TCONS_00037435-exon-sc0001628-1575043694:18965..20178 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001628 | supercontig | sc0001628:18965..20178 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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