TCONS_00037300 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037300
Unique NameTCONS_00037300
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length739

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037300 ID=TCONS_00037300|Name=TCONS_00037300|organism=Clytia hemisphaerica|type=transcript|length=739bp
taTTATGATGACATCATTACGTTCATGCAAAACAGAACAGAAGGCCTTTA
TGAGAACATTTGCGATGGAGAGGTTTACAAGAGTCACGATGACCACAATC
GCATTACGATGGTCTGGATATTGATGGAGCTCctacaatcaaatcaaaat
ctttgaatGTTTGGCTTATCACTGCATTCGTTGTCGAGTTACGAGTTACA
CAAGCGTTTTAGTGTGcgaaacattttattttgttgCATTTGGTATGGCG
AACAgaaccaaattttgatctgtttcaGCTTCAATTTGTTCGGGAGGTAA
AACAACTACGTGACATTGGTTTTGCTGTAAGCATACTTGAtgaagacaat
ttttttttccttgaaattCAAGCAAGTTTAGCAGATTTACCTGCAAGAGC
TGCATCATTGAGCTTAAAACAGTTTAAGGGAAAGTTTGGATGCCCGGTCT
GTTATCATCCTGGATGCCCCAAAGAAGGAAATCATCTAGTTCGGTTTTAT
CGTTTTCAAGAAAATCCTTTCCCTTTGAGAACAATGGAAGAAAGCATGTT
GTTTGCTGAGCGCGCTGAGGAGAAGGGAAATGCATTTTTTGGTTGGAAGG
GAAAGTCTGTAGTGCTAGATATCACTGAAATACTGTATAAAGTTCCTTTT
GATTATATGCACTTGATCCTAGAGGGGGATTAAAacgaaaactttcaaaa
tttcttttcccaCCGAACGGACCCCTCGATCAAGATGGC
Run BLAST on NCBI

transcript from alignment at sc0001611:13953..14691

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037300 ID=TCONS_00037300|Name=TCONS_00037300|organism=Clytia hemisphaerica|type=transcript|length=739bp|location=Sequence derived from alignment at sc0001611:13953..14691 (Clytia hemisphaerica)
GCCATCTTGATCGAGGGGTCCGTTCGGtgggaaaagaaattttgaaagtt
ttcgtTTTAATCCCCCTCTAGGATCAAGTGCATATAATCAAAAGGAACTT
TATACAGTATTTCAGTGATATCTAGCACTACAGACTTTCCCTTCCAACCA
AAAAATGCATTTCCCTTCTCCTCAGCGCGCTCAGCAAACAACATGCTTTC
TTCCATTGTTCTCAAAGGGAAAGGATTTTCTTGAAAACGATAAAACCGAA
CTAGATGATTTCCTTCTTTGGGGCATCCAGGATGATAACAGACCGGGCAT
CCAAACTTTCCCTTAAACTGTTTTAAGCTCAATGATGCAGCTCTTGCAGG
TAAATCTGCTAAACTTGCTTGaatttcaaggaaaaaaaaattgtcttcaT
CAAGTATGCTTACAGCAAAACCAATGTCACGTAGTTGTTTTACCTCCCGA
ACAAATTGAAGCtgaaacagatcaaaatttggttcTGTTCGCCATACCAA
ATGcaacaaaataaaatgtttcgCACACTAAAACGCTTGTGTAACTCGTA
ACTCGACAACGAATGCAGTGATAAGCCAAACattcaaagattttgatttg
attgtagGAGCTCCATCAATATCCAGACCATCGTAATGCGATTGTGGTCA
TCGTGACTCTTGTAAACCTCTCCATCGCAAATGTTCTCATAAAGGCCTTC
TGTTCTGTTTTGCATGAACGTAATGATGTCATCATAAta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022088XLOC_022088Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037300-exon-sc0001611-1491911889:13953..14691TCONS_00037300-exon-sc0001611-1491911889:13953..14691Clytia hemisphaericaexon
TCONS_00037300-exon-sc0001611-1510915933:13953..14691TCONS_00037300-exon-sc0001611-1510915933:13953..14691Clytia hemisphaericaexon
TCONS_00037300-exon-sc0001611-1575043694:13953..14691TCONS_00037300-exon-sc0001611-1575043694:13953..14691Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001611supercontigsc0001611:13953..14691 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0652762	0	0	0	0.142667	0.708499	0.172308	0.604996	1.19411	0.696202	0.141006	0.138361	0.138701	0.114031	0.285536	0	0.206022	0	0.0744615	0.0647206	0.0947053	0	0	0.287478	0.0699956	0.0917868	0	0.0836341	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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