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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037187 ID=TCONS_00037187|Name=TCONS_00037187|organism=Clytia hemisphaerica|type=transcript|length=1202bp
acaaCATAATTCAGATCCAGATTACAAACGAAAATACAACCTAACACGAG
CAGAACGAGAAGCACTTAAAGAACTTCAACTCAGAGATGACATCATAATT
ACAAAAGCTGACAAAGGTGGAGCTGTAGTCATACAAGATGTAAAAGATTA
TATTGCAGAAGCCAACCGCCAACTAGAAGATCAAACTTCCTATAGAAAAC
TCGAATCAAATCTAACCGAACGACACAACAAACTAATCAACGGAACCATA
GATTCACTACACGATTCAAACCTTCTCACTGAAAAGGAACGATCAATGTT
TAAGACGCCAAACCCCAAAACCCCAAAATTCTACACACAACCTAAAATAC
ACAAAGAAGGTAACCCAGGAAGACCTGTAATCAGTTCAATCAATTGCCAC
ACTGCCCTGATTTCAAAATATGTAGACTTTCACCTACAGGATCATGTCAC
CAAGACGTCTTCATACATAAAAGATACAACCGATTTCATCAACAAAATTG
AAACCATAACCCTTCCACAAAATCCAATACTAGTCACCATGGACGTTAAA
TCTCTATATACAAACATCCCTAACGAAGAAGGAATCAATGCCATCAACAA
CATCCTTACAACCAATAAAACACAAAACtcgttaaaaacaaaaatactca
ccTTTCTAAGACTCATTCTCACCCTCAACAACTTCTGTTTTAATGAAACC
CACTACCTACAAATCAAAGGCTGCGCCATGGGCACAAAATGTGCCCCGAC
CTATGCTAATCTATTCATGTCACAGTTCGAAGAATCAAACATCTATCCAC
TTCTAACCGAAAAGTGCAAAACTTACTTAAGATTCATAGACGATATCTTC
ATGATGATATGGTCCGGAGCAGAAGAAGAACTAAAAAGATTCATCCAAGA
AATCAATACTCTCCACGAAACAATCAAGTTCACAGCTGAATATTCAAAGA
AGGAAATTAGCTTCCTAGACACCATTGTTACCATCAGCGGATCTAAACTA
ATCACAAGACTATACAAAAAACCAACAGACAGATCAGCTTATCTCCATAA
CCAATCCTACCACCCTAACCATTTAAAGAAGAACATACCTTTCGGTCAAA
CCCTTAGACTCAAAAGAATCTNCAACCAATCCTACCACCCCAATCATTTA
AAGAAGAACATACCTTTCGGTCAAACCCTTAGACTCAAAAGAATCTGCAA
AG Run BLAST on NCBI protein sequence of TCONS_00037187-protein >TCONS_00037187-protein ID=TCONS_00037187-protein|Name=TCONS_00037187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=400bp
QHNSDPDYKRKYNLTRAEREALKELQLRDDIIITKADKGGAVVIQDVKDY
IAEANRQLEDQTSYRKLESNLTERHNKLINGTIDSLHDSNLLTEKERSMF
KTPNPKTPKFYTQPKIHKEGNPGRPVISSINCHTALISKYVDFHLQDHVT
KTSSYIKDTTDFINKIETITLPQNPILVTMDVKSLYTNIPNEEGINAINN
ILTTNKTQNSLKTKILTFLRLILTLNNFCFNETHYLQIKGCAMGTKCAPT
YANLFMSQFEESNIYPLLTEKCKTYLRFIDDIFMMIWSGAEEELKRFIQE
INTLHETIKFTAEYSKKEISFLDTIVTISGSKLITRLYKKPTDRSAYLHN
QSYHPNHLKKNIPFGQTLRLKRIXNQSYHPNHLKKNIPFGQTLRLKRICK Run BLAST on NCBI transcript from alignment at sc0001589:3935..5136 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037187 ID=TCONS_00037187|Name=TCONS_00037187|organism=Clytia hemisphaerica|type=transcript|length=1202bp|location=Sequence derived from alignment at sc0001589:3935..5136 (Clytia hemisphaerica)
CTTTGCAGATTCTTTTGAGTCTAAGGGTTTGACCGAAAGGTATGTTCTTC
TTTAAATGATTGGGGTGGTAGGATTGGTTGNAGATTCTTTTGAGTCTAAG
GGTTTGACCGAAAGGTATGTTCTTCTTTAAATGGTTAGGGTGGTAGGATT
GGTTATGGAGATAAGCTGATCTGTCTGTTGGTTTTTTGTATAGTCTTGTG
ATTAGTTTAGATCCGCTGATGGTAACAATGGTGTCTAGGAAGCTAATTTC
CTTCTTTGAATATTCAGCTGTGAACTTGATTGTTTCGTGGAGAGTATTGA
TTTCTTGGATGAATCTTTTTAGTTCTTCTTCTGCTCCGGACCATATCATC
ATGAAGATATCGTCTATGAATCTTAAGTAAGTTTTGCACTTTTCGGTTAG
AAGTGGATAGATGTTTGATTCTTCGAACTGTGACATGAATAGATTAGCAT
AGGTCGGGGCACATTTTGTGCCCATGGCGCAGCCTTTGATTTGTAGGTAG
TGGGTTTCATTAAAACAGAAGTTGTTGAGGGTGAGAATGAGTCTTAGAAA
ggtgagtatttttgtttttaacgaGTTTTGTGTTTTATTGGTTGTAAGGA
TGTTGTTGATGGCATTGATTCCTTCTTCGTTAGGGATGTTTGTATATAGA
GATTTAACGTCCATGGTGACTAGTATTGGATTTTGTGGAAGGGTTATGGT
TTCAATTTTGTTGATGAAATCGGTTGTATCTTTTATGTATGAAGACGTCT
TGGTGACATGATCCTGTAGGTGAAAGTCTACATATTTTGAAATCAGGGCA
GTGTGGCAATTGATTGAACTGATTACAGGTCTTCCTGGGTTACCTTCTTT
GTGTATTTTAGGTTGTGTGTAGAATTTTGGGGTTTTGGGGTTTGGCGTCT
TAAACATTGATCGTTCCTTTTCAGTGAGAAGGTTTGAATCGTGTAGTGAA
TCTATGGTTCCGTTGATTAGTTTGTTGTGTCGTTCGGTTAGATTTGATTC
GAGTTTTCTATAGGAAGTTTGATCTTCTAGTTGGCGGTTGGCTTCTGCAA
TATAATCTTTTACATCTTGTATGACTACAGCTCCACCTTTGTCAGCTTTT
GTAATTATGATGTCATCTCTGAGTTGAAGTTCTTTAAGTGCTTCTCGTTC
TGCTCGTGTTAGGTTGTATTTTCGTTTGTAATCTGGATCTGAATTATGtt
gt Coding sequence (CDS) from alignment at sc0001589:3935..5136 >TCONS_00037187 ID=TCONS_00037187|Name=TCONS_00037187|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at sc0001589:3935..5136 (Clytia hemisphaerica)
TTTGCAGATTCTTTTGAGTCTAAGGGTTTGACCGAAAGGTATGTTCTTCT
TTAAATGATTGGGGTGGTAGGATTGGTTGNAGATTCTTTTGAGTCTAAGG
GTTTGACCGAAAGGTATGTTCTTCTTTAAATGGTTAGGGTGGTAGGATTG
GTTATGGAGATAAGCTGATCTGTCTGTTGGTTTTTTGTATAGTCTTGTGA
TTAGTTTAGATCCGCTGATGGTAACAATGGTGTCTAGGAAGCTAATTTCC
TTCTTTGAATATTCAGCTGTGAACTTGATTGTTTCGTGGAGAGTATTGAT
TTCTTGGATGAATCTTTTTAGTTCTTCTTCTGCTCCGGACCATATCATCA
TGAAGATATCGTCTATGAATCTTAAGTAAGTTTTGCACTTTTCGGTTAGA
AGTGGATAGATGTTTGATTCTTCGAACTGTGACATGAATAGATTAGCATA
GGTCGGGGCACATTTTGTGCCCATGGCGCAGCCTTTGATTTGTAGGTAGT
GGGTTTCATTAAAACAGAAGTTGTTGAGGGTGAGAATGAGTCTTAGAAAg
gtgagtatttttgtttttaacgaGTTTTGTGTTTTATTGGTTGTAAGGAT
GTTGTTGATGGCATTGATTCCTTCTTCGTTAGGGATGTTTGTATATAGAG
ATTTAACGTCCATGGTGACTAGTATTGGATTTTGTGGAAGGGTTATGGTT
TCAATTTTGTTGATGAAATCGGTTGTATCTTTTATGTATGAAGACGTCTT
GGTGACATGATCCTGTAGGTGAAAGTCTACATATTTTGAAATCAGGGCAG
TGTGGCAATTGATTGAACTGATTACAGGTCTTCCTGGGTTACCTTCTTTG
TGTATTTTAGGTTGTGTGTAGAATTTTGGGGTTTTGGGGTTTGGCGTCTT
AAACATTGATCGTTCCTTTTCAGTGAGAAGGTTTGAATCGTGTAGTGAAT
CTATGGTTCCGTTGATTAGTTTGTTGTGTCGTTCGGTTAGATTTGATTCG
AGTTTTCTATAGGAAGTTTGATCTTCTAGTTGGCGGTTGGCTTCTGCAAT
ATAATCTTTTACATCTTGTATGACTACAGCTCCACCTTTGTCAGCTTTTG
TAATTATGATGTCATCTCTGAGTTGAAGTTCTTTAAGTGCTTCTCGTTCT
GCTCGTGTTAGGTTGTATTTTCGTTTGTAATCTGGATCTGAATTATGttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037187-exon-sc0001589-1491911889:3935..5136 | TCONS_00037187-exon-sc0001589-1491911889:3935..5136 | Clytia hemisphaerica | exon |
| TCONS_00037187-exon-sc0001589-1510915933:3935..5136 | TCONS_00037187-exon-sc0001589-1510915933:3935..5136 | Clytia hemisphaerica | exon |
| TCONS_00037187-exon-sc0001589-1575043694:3935..5136 | TCONS_00037187-exon-sc0001589-1575043694:3935..5136 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001589 | supercontig | sc0001589:3935..5136 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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