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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036936 ID=TCONS_00036936|Name=TCONS_00036936|organism=Clytia hemisphaerica|type=transcript|length=1529bpRun BLAST on NCBI transcript from alignment at sc0001539:36263..45174+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00036936 ID=TCONS_00036936|Name=TCONS_00036936|organism=Clytia hemisphaerica|type=transcript|length=8912bp|location=Sequence derived from alignment at sc0001539:36263..45174+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00036936 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3) HSP 1 Score: 129.413 bits (324), Expect = 9.346e-32 Identity = 90/234 (38.46%), Postives = 122/234 (52.14%), Query Frame = 3
Query: 216 NYYEGDIKLSYKQLLFGSIRGK--RWTNGIVPYVVHSSLA-GVENVINDAIGVYHKKTCLKFVKRTNQRNYIEFFKETGCWSYVG-MSGGKQQLSLGTGCHWTATTQHEIGHAIGLQHEQTRPDRNQYVKIHLNN-LNNQKYAGNFHINSGVDSLGTPYDFYSMMHYGSTAFAKSGTKTITTLDRSKQRIIDNNYXTKTITTLDRSKQRIIDNNYHYGMSDIDAKQINLMYKCA 902
+ +EGDI+L Q+ SI G+ RW + I PYV+ SL + VI +A Y KTC+ F + NYI FK +GCWS VG GKQ+LS+G C AT QHE HA+G HEQ+R DR+ YV+I + L+ +++ N + + DSL PYD+ S+MHY TAF TI T RI D D QR+ SD D ++N +Y C+
Sbjct: 47 DLFEGDIRLDRAQIR-NSIIGEKYRWPHTI-PYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPWAGETNYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVT------RISDFE---------DVIGQRM-------DFSDSDLLKLNQLYNCS 256 The following BLAST results are available for this feature:
BLAST of TCONS_00036936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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