TCONS_00036570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036570
Unique NameTCONS_00036570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036570 ID=TCONS_00036570|Name=TCONS_00036570|organism=Clytia hemisphaerica|type=transcript|length=1349bp
CTCATATGCTTCAGTTGCTTGTTTAGATACATCTGACAGCCAGTTTTTTG
TATCATTCATCTGTTCTTCTGAAAACGACTGAACACCTAACNCGATTTTT
ATCTTTGGTGGTAATAGTTTTACGTCTGAGACAATATGAACTACATGAAT
GTAACAAAACCTTGTTAACTACATTGATATGAAAAGATTTAAGTTCCTCT
TGGTTTCCTTGACATAACAGGCATTTTTTTAATATATCTTTGTCAATGTT
AGATAACGTTCCATGAGGTTGAGgccaattttctttgtttggaATCCATT
CTGATGGTTTATCATCAAAGTTTTTTTCCTGTCCTCCAGCTGGATGCATA
GAAACAAATTGAGGTGAGAAGATATTTTCTTCATTCAATTCATTTGTTTG
CAACCATCTTTCTAGATCCTTAGCAATATTAACACATggatcattttcat
tttgtgcTAATATTGCTTTGACAATATTATAGTGCCAGTTAGAGAAATAT
AAGGAGTGTGAATGAATTTGTCCACGTGATTTAGCAAATTCATATTTACT
CCAACACTCATCATATTGAAACAACTCCTTTAAcactgttttttttataa
ttgttATGTCTCACATCAAAATATGTTGTAATAATGTGTTGATTCTGCAA
AATGGCTTGGTGGCGGAACCTAGAATCACTATTGAATTTAGCTCTCATAT
CATTTTCTGGTTCTCCATTTATTTTGGCAAGGTATTTGATCAAAAGATTG
TGTAGAGGCACCCAATGGTGCTCTGCACAAGTATTGGTATCAAAGTAAGT
TGGATAAACATTGTTTTCTTTTAACATAAAGAAACAAAGAGAATCCAACT
CATGTTTTCTCTCTCGCCAATATGGGGCTGTGTCTACAAGGTTAGCCCCC
ATAGATATGAACTTTCGTGGGATAGATTGGTCATTATTTTCTAGCTTTTC
AAGTAATTCATCCCTTGTTAGATGTCTTTCATTTACTTGTTGATTAACAC
AAAAACTTCCTTGATTTAAAGCCTTTTGACGCAAATTAATATTCATAAGA
TGAAATTTTAGGAATCTGTGTGCAGGCACTCTGTTATCTTTACAATAATA
GATATGCTCTATCCATtcctcaaatttcaaattccgTGCAGCCTTAATGG
TATAATCACATGACCCATTAATAAATATATGGGGATAGCACATGGTAAAA
AACCCTTCTGTGGAGAGTTCAGGAATAGGTTTAtctattctattgttttc
atatAGTTTCCCAACATCTGCTACACCACCTGCTGCAATAAATTCTTCAA
TATTAGTATTCTCCCCAAGGAATGAACGTAATGCATTTTTAATGTTCTC
Run BLAST on NCBI

transcript from alignment at sc0001481:19578..21171+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036570 ID=TCONS_00036570|Name=TCONS_00036570|organism=Clytia hemisphaerica|type=transcript|length=1594bp|location=Sequence derived from alignment at sc0001481:19578..21171+ (Clytia hemisphaerica)
CTCATATGCTTCAGTTGCTTGTTTAGATACATCTGACAGCCAGTTTTTTG
TATCATTCATCTGTTCTTCTGAAAACGACTGAACACCTAACNCGATTTTT
ATCTTTGGTGGTAATAGTTTTACGTCTGAGACAATATGAACTACATGAAT
GTAACAAAACCTTGTTAACTACATTGATATGAAAAGATTTAAGTTCCTCT
TGGTTTCCTTGACATAACAGGCATTTTTTTAATATATCTTTGTCAATGTT
AGATAACGTTCCATGAGGTTGAGgccaattttctttgtttggaATCCATT
CTGATGGTTTATCATCAAAGTTTTTTTCCTGTCCTCCAGCTGGATGCATA
GAAACAAATTGAGGTGAGAAGATATTTTCTTCATTCAATTCATTTGTTTG
CAACCATCTTTCTAGATCCTTAGCAATATTAACACATGGATCATTTTCAT
CTTGTGCTAATATTGCTTTGACAATATTATNATCATATGCAATTTTAGCA
AACTGCAACATCATTCTGACAGACTCTGTACAATAATCTGTATCTAAGAA
ATTAGCAAAGGATTCGGTGTATGTTTCAAAGCCATTTTTTCAGATCTTCA
ACATTTCTCCAAGTACCAGgatgaaatttcatcaaaagctCTCTTGAAAA
GTCTTCACCTGTTGGCCAAATCCAAAANACATggatcattttcattttgt
gcTAATATTGCTTTGACAATATTATAGTGCCAGTTAGAGAAATATAAGGA
GTGTGAATGAATTTGTCCACGTGATTTAGCAAATTCATATTTACTCCAAC
ACTCATCATATTGAAACAACTCCTTTAAcactgttttttttataattgtt
ATGTCTCACATCAAAATATGTTGTAATAATGTGTTGATTCTGCAAAATGG
CTTGGTGGCGGAACCTAGAATCACTATTGAATTTAGCTCTCATATCATTT
TCTGGTTCTCCATTTATTTTGGCAAGGTATTTGATCAAAAGATTGTGTAG
AGGCACCCAATGGTGCTCTGCACAAGTATTGGTATCAAAGTAAGTTGGAT
AAACATTGTTTTCTTTTAACATAAAGAAACAAAGAGAATCCAACTCATGT
TTTCTCTCTCGCCAATATGGGGCTGTGTCTACAAGGTTAGCCCCCATAGA
TATGAACTTTCGTGGGATAGATTGGTCATTATTTTCTAGCTTTTCAAGTA
ATTCATCCCTTGTTAGATGTCTTTCATTTACTTGTTGATTAACACAAAAA
CTTCCTTGATTTAAAGCCTTTTGACGCAAATTAATATTCATAAGATGAAA
TTTTAGGAATCTGTGTGCAGGCACTCTGTTATCTTTACAATAATAGATAT
GCTCTATCCATtcctcaaatttcaaattccgTGCAGCCTTAATGGTATAA
TCACATGACCCATTAATAAATATATGGGGATAGCACATGGTAAAAAACCC
TTCTGTGGAGAGTTCAGGAATAGGTTTAtctattctattgttttcatatA
GTTTCCCAACATCTGCTACACCACCTGCTGCAATAAATTCTTCAATATTA
GTATTCTCCCCAAGGAATGAACGTAATGCATTTTTAATGTTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021578XLOC_021578Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036570-exon-sc0001481-1491911889:19578..20012TCONS_00036570-exon-sc0001481-1491911889:19578..20012Clytia hemisphaericaexon
TCONS_00036570-exon-sc0001481-1510915933:19578..20012TCONS_00036570-exon-sc0001481-1510915933:19578..20012Clytia hemisphaericaexon
TCONS_00036570-exon-sc0001481-1575043694:19578..20012TCONS_00036570-exon-sc0001481-1575043694:19578..20012Clytia hemisphaericaexon
TCONS_00036570-exon-sc0001481-1491911889:20258..21171TCONS_00036570-exon-sc0001481-1491911889:20258..21171Clytia hemisphaericaexon
TCONS_00036570-exon-sc0001481-1510915933:20258..21171TCONS_00036570-exon-sc0001481-1510915933:20258..21171Clytia hemisphaericaexon
TCONS_00036570-exon-sc0001481-1575043694:20258..21171TCONS_00036570-exon-sc0001481-1575043694:20258..21171Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001481supercontigsc0001481:19578..21171 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.663052	0.750431	0.672124	0.194944	0.883892	0.549588	0.587726	0.64786	0.391746	0.871749	0.303798	1.02862	0.576589	0.451394	0.314199	0.281559	0.216131	0.294412	0.568864	0.624787	0.425202	0.0149815	0.100239	0.214162	1.44152	1.33269	0.856433	0.859135	0.241725	0.268452
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025476Helitron_helicase-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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