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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036560 ID=TCONS_00036560|Name=TCONS_00036560|organism=Clytia hemisphaerica|type=transcript|length=648bp
GGGAGGAGTTGTTGGAAAACTTTCAGAGCTGGATGCTGAGGTCGTGCCAC
CTGAGCCCTAAAAACGCTAAGGAATATCGGGCACATGTCAAGCACGTTTG
GTCCAACATTGACATAGATCTCAAATGCGGACCTTCAACATGCTTTTCCC
CTGAAAGATTGCAAGACGAATTTTATGGGAAATTCGTATCAAAAATGAAG
AGAGAAATGCAGAAACCGTTGAACCAACAAGATGGTTTTTATAAACCATC
GACAATTTCATCTAAACTCAGTGCGGTTGCAAAATTCCTGAAATTTACGA
CAgagagaaggatattttttggtCTTACCTGCAATCAAATATCCATATTC
AGAGAGCAAATTAAAACCCATACAAAAGGTCTTAGTCCCGACATCGCTCA
ACGGCAGCACGATGTCAAAGAAGATAAGCTTCAAAATCTCCTTCAGGCTA
AACACTTCGTTAAATTTGGGGCATCAGTTTATGTCAAAGAGATCGTgaca
aaactcaaaaacagGGAGGATTTTAACCAGTTCGATGATTTTGCAGCACG
GAATATCCTCACGATATTCACTTGTTTTGTCAATGGGCTCAGAGCTTCAA
ATTTAATGAACATGAGCATCCAGGATTTCGAAAAAGCCGAGTTCGACA Run BLAST on NCBI protein sequence of TCONS_00036560-protein >TCONS_00036560-protein ID=TCONS_00036560-protein|Name=TCONS_00036560-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
EELLENFQSWMLRSCHLSPKNAKEYRAHVKHVWSNIDIDLKCGPSTCFSP
ERLQDEFYGKFVSKMKREMQKPLNQQDGFYKPSTISSKLSAVAKFLKFTT
ERRIFFGLTCNQISIFREQIKTHTKGLSPDIAQRQHDVKEDKLQNLLQAK
HFVKFGASVYVKEIVTKLKNREDFNQFDDFAARNILTIFTCFVNGLRASN
LMNMSIQDFEKAEFD Run BLAST on NCBI transcript from alignment at sc0001480:4699..9201- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036560 ID=TCONS_00036560|Name=TCONS_00036560|organism=Clytia hemisphaerica|type=transcript|length=4503bp|location=Sequence derived from alignment at sc0001480:4699..9201- (Clytia hemisphaerica)
GGGAGGAGTTGTTGGAAAACTTTCAGAGCTGGATGCTGAGGTCGTGCCAC
CTGAGCCCTAAAAACGCTAAGGAATATCGGGCACATGTCAAGCACGTTTG
GTCCAACATTGACATAGATCTCAAATGCGGACCTTCAACATGCTTTTCCC
CTGAAAGATTGCAAGACGAATTTTATGGGAAATTCGTATCAAAAATGAAG
AGAGAAATGCAGAAACCGTTGAACCAACAAGATGGTTTTTATAAACCATC
GACAATTTCATCTAAACTCAGTGCGGTTGCAAAATTCCTGAAATTTACGA
CAGAGAGAAGGATATTTTTTGGTCTTACCTGCAATCAAATATCCATATTC
AGAGAGCAAATTAAAACCCATACAAAAGGTTTGTCTAATGGGTGCTTTTA
TATTCATGATTAAAGTGAAACAAAAACAGCAAAAGATTTTGAAAACAAAA
AATTTAAACAAATGCATATTTCTAGATACAAAATCGATTTTAAAATTTGT
AACTTTGACATCAATTGCATTTATTAATAGTAAATTTTGAATCCAATCTG
CCTATTTAGGAAAAAAATAGCATTTTTCCCTCGAATGATCCAAATAATGC
TTTCTGAAAATTGTTGCATGGATTCGCAAAAATTAAATCTGTTCTACATA
TTTCAAGAATTAGGGCTGTTGTTTCTTGGCATTATATCAGATCAAGAGAC
CACTGCATTGCCGTATCATGATATGATTGATGTATAACTCTAAATTTATC
ATTTGATTTTATGGTAAGAGAAGGGGTTACAAAGACTGGGGTATCGATAC
TTTTAAGAATTGCTCTGACTCCTATCAAATACTTTGACCTGTTTGGAAGA
ATTCTTATTTTTGAAACAAATTTTTATTGCAGGTCTTAGTCCCGACATCG
CTCAACGGCAGCACGATGTCAAAGAAGATAAGCTTCAAAATCTCCTTCAG
GCTAAACACTTCGTTAAATTTGGGGCATCAGTTTATGTCAAAGAGATCGT
GACAAAACTCAAAAACAGGGAGGATTTTAACCAGTTCGATGATTTTGCAG
CACGGAATATCCTCACGATATTCACTTGTTTTGTCAATGGGCTCAGGTAA
AATATTTGTTAGATATATCATTCTTTCAACTAAAATCATGCAGCGGTCAA
ACTAAACTTTTCTTCGAAGGATAATGTATTTTAAGAACTTTTTCGGGAAA
GAGCGAGAAAGAGTAAAATTTACAGCCGAAAGTCAAAAATGGGCTAGAAA
CTTGGCTTTTGTTCAACCAAAAAATGAAAGCAATGATTGATGCAATCAAA
TAGAGCTTGAAATTCTTAGCATACAATATATTGCACCAAGTCTCCTACTC
AAACTTACAAAACGTCACAGTTATTTTTAGAAACAAAACCTGTCACAATG
AAGCTACACTGGGTGAAAAGCCATCTTTCCTACAATTCCAAATTTCGAAA
AATTCATATTTCCTGGATTTTTTTTTTAAAAAAGTCATGTTTCCAAATAT
TTCAAAATCTGAACATTCAGTTTGTTGAAAGATCAGAAAATTGATATTTA
CTGATATTTCTAGATTTGAAATTTGAAATTTTGTAATCTTTTCAGAGATT
TGGAAATTTGAAATTTCCAGCGTCAAAAAGAGCTGAAAGATGAGTTTTCC
AAAATTTTTGAAGAGAAAAAATACGAACTTTCCATGACTTTAAAAAGTCT
AAAGATCTGAAATTTCCAACATTGAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGATCTGAAATTTCCAA
CATTGAAAAAGAGCTGAAAGCTGTCTTTCCGAAATTTCCAAATTTTGAAA
ATCTCATGTTCCCAGAGATTTCCATGTTTTTGAGAATTTGAACTTTCAGT
TTTTGAGAAACTCAGAAAGTTTATGTTTTTAGATGCTTTCAAAACTTGAA
ATTTCATATTTTATGGTCTTCTTAAAAGTTCAGGAAATTTCATATTTTCA
GTTGCTAGAAAAACCCAAAAGATTCTCAANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACACCGAT
ATGTGCGAGCAGTAAGGGTACCCTTTTTTATACCTCAAAAGTCTTTCAAA
GGGGTACACATCTATAGCTTATTATTCTCCCAAGAGGTCCCAAAATCTAA
AAAATGGAGAATTAGGTAGCTCATAGCCAGGAAATACTGGCTAAAATTTC
CCTATCTTACAAAGTGATGAGGGAAATACACGTTTTTTTTTATAAGAACA
AACTATATAAGAACATAAGGCTTCCAGCCCAAAAATTTAAGAACATTCTA
AGAACATACTAAGGCTTTGGAGACTTAAAAACATGCAATTTCTTAAGAAA
TTACATCAAAATGCTCAAAAAATGCTGAAAATAAGAACATGTAAGAACAT
TTTTAGGCTTCAAATCCAAAAAACTAAGAACATCCGAAGGCTTCGAAAAT
TTTTGACGTTCTTATAAAAAAAAACGTGTAGTAGTATCTGCTGAACAAGG
AATTCGACATTTTGGAGGTTTCCGCAGTGAAGCGATAGTCGGGTTTCCTG
TCTAGGTGGCTCACGACTTTAGAAAAATTAGGAGCATAAATTTTGTGGAA
AATCCTCAAAAATTCGAAAGTTTTTCTCGAAGAAGGCTGAAACTAGCTGT
AACGTGAAGCTTTAGTACAAAAATAAAAACAGCACAAGAAAGAAAATTGT
TTTTTCTGCTATTATTCCTTATATGGAAGTAATTGCTCTCCCTAAAGAAT
TTATACTTTTGAACCACCTTTGGTATGACGTAAAGTTCCTTTATTCATTA
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCACTTTAGTCGGTAAAAAATAATTATTAAAAT
AATTTATACAATGTCTCCAGCCAATCAAATACGAGTACTCAATCATGTGA
TTTTGAGCGGACATGTGGAATGTTTGAATGTTTATTTCATTATTTCTCTC
TAAAGTTCTTAGGTAGATGAAGTGGTGTTGAGTTTTGGTTGAATTTCTGG
TGCGTAAAGTTATATATTTTTCACATTATCTAATGTTTTTATTTTGTTTT
TAGAAAAGAAATATTTGAAATGGAAACAAATTCAGCATAGACGCAACCAT
GGAATCATTCTATCGTCAAAACTGTTGTCATCGTTATGTTGTTATTGTAG
AAAAACTTTTAACTGAATCCTTTGCTCGATTATAAGTCTTGTTGCAATCG
GTGAAGTAAATTCATTTGGATTTCCAATGAAAAGTATATCGATACATTAC
GCTTCAGAATGACAGACTTTATCGGTGGCTTGAAATCTCAAAACTTCACT
TCAAACATATACAAAATTTAAACTCTAATTTAAATGTAATAAAAATAAAC
GTGTACAATGTAGTCCAGAAACTGGAGCTCGACTACTTATTTCGTATGTG
AGGCTCTAATACAGACTCGGCAAGAATGGGATGGATATTGAGATGGGAGA
TTCGGCAGATTTTTTAGAACATATTAGCTTTTTTATCTTTGAAATGAAAG
ATGTTACAATAAAGATATAATGTACTGTATGTAGTAGATTTTGTCAATTG
AAATGTTAAAGATGACCTTTCGATTGAAAAGAATACCAGGAAATATTCGA
GGTTTCAACGTTTTGGGAATTTAGAACATGTCACATAGTAGCGTTTCCAA
AGTTGGAAAAGATGACATTTCCATTCCTCAAGAAATCCCCAAAAAGATAA
ATTTTAAAACATAAAATAAGACCAGGAAATTTCATATTTTAAATTTTGGA
AATTTAGAAAATGTCACACAATGAGCTTTCCAATTTTGCAAAATTTTATA
TTTCCATTCCTCAAGAAATCCCCAAAAAGATGAATTTTAAAACATAAGAA
AAGACCAGGAAACTTGATATTTTAAATTTTGGAAATTTAGAAAATGTCAC
ACAATGAGCTTTCCAATTTTGCAAAATTTTATATTTCCATATGTTCATAA
AGTTCCAAAAATCTGGAATTTCCAGACATTTTTAGGAATTTTTTGGGATT
TCAAATGTATTGGAAATTTGACTTTTCTCCCAGTGCTAGTTATCAATAAA
CTCTGTTATTTTTACATTCTGTTTTGTTCTTATATTTTAATCAATAGAGC
TTCAAATTTAATGAACATGAGCATCCAGGATTTCGAAAAAGCCGAGTTCG
ACA Coding sequence (CDS) from alignment at sc0001480:4699..9201- >TCONS_00036560 ID=TCONS_00036560|Name=TCONS_00036560|organism=Clytia hemisphaerica|type=CDS|length=1935bp|location=Sequence derived from alignment at sc0001480:4699..9201- (Clytia hemisphaerica)
AGCTTCAAATTTAATGAACATGAGCATCCAGGATTTCGAAAAAGCCGAGT
TCGACGTCTTAGTCCCGACATCGCTCAACGGCAGCACGATGTCAAAGAAG
ATAAGCTTCAAAATCTCCTTCAGGCTAAACACTTCGTTAAATTTGGGGCA
TCAGTTTATGTCAAAGAGATCGTGACAAAACTCAAAAACAGGGAGGATTT
TAACCAGTTCGATGATTTTGCAGCACGGAATATCCTCACGATATTCACTT
GTTTTGTCAATGGGCTCAGGAGGAGTTGTTGGAAAACTTTCAGAGCTGGA
TGCTGAGGTCGTGCCACCTGAGCCCTAAAAACGCTAAGGAATATCGGGCA
CATGTCAAGCACGTTTGGTCCAACATTGACATAGATCTCAAATGCGGACC
TTCAACATGCTTTTCCCCTGAAAGATTGCAAGACGAATTTTATGGGAAAT
TCGTATCAAAAATGAAGAGAGAAATGCAGAAACCGTTGAACCAACAAGAT
GGTTTTTATAAACCATCGACAATTTCATCTAAACTCAGTGCGGTTGCAAA
ATTCCTGAAATTTACGACAGAGAGAAGGATATTTTTTGGTCTTACCTGCA
ATCAAATATCCATATTCAGAGAGCAAATTAAAACCCATACAAAAGAGCTT
CAAATTTAATGAACATGAGCATCCAGGATTTCGAAAAAGCCGAGTTCGAC
GTCTTAGTCCCGACATCGCTCAACGGCAGCACGATGTCAAAGAAGATAAG
CTTCAAAATCTCCTTCAGGCTAAACACTTCGTTAAATTTGGGGCATCAGT
TTATGTCAAAGAGATCGTGACAAAACTCAAAAACAGGGAGGATTTTAACC
AGTTCGATGATTTTGCAGCACGGAATATCCTCACGATATTCACTTGTTTT
GTCAATGGGCTCAGGAGGAGTTGTTGGAAAACTTTCAGAGCTGGATGCTG
AGGTCGTGCCACCTGAGCCCTAAAAACGCTAAGGAATATCGGGCACATGT
CAAGCACGTTTGGTCCAACATTGACATAGATCTCAAATGCGGACCTTCAA
CATGCTTTTCCCCTGAAAGATTGCAAGACGAATTTTATGGGAAATTCGTA
TCAAAAATGAAGAGAGAAATGCAGAAACCGTTGAACCAACAAGATGGTTT
TTATAAACCATCGACAATTTCATCTAAACTCAGTGCGGTTGCAAAATTCC
TGAAATTTACGACAGAGAGAAGGATATTTTTTGGTCTTACCTGCAATCAA
ATATCCATATTCAGAGAGCAAATTAAAACCCATACAAAAGAGCTTCAAAT
TTAATGAACATGAGCATCCAGGATTTCGAAAAAGCCGAGTTCGACGTCTT
AGTCCCGACATCGCTCAACGGCAGCACGATGTCAAAGAAGATAAGCTTCA
AAATCTCCTTCAGGCTAAACACTTCGTTAAATTTGGGGCATCAGTTTATG
TCAAAGAGATCGTGACAAAACTCAAAAACAGGGAGGATTTTAACCAGTTC
GATGATTTTGCAGCACGGAATATCCTCACGATATTCACTTGTTTTGTCAA
TGGGCTCAGGAGGAGTTGTTGGAAAACTTTCAGAGCTGGATGCTGAGGTC
GTGCCACCTGAGCCCTAAAAACGCTAAGGAATATCGGGCACATGTCAAGC
ACGTTTGGTCCAACATTGACATAGATCTCAAATGCGGACCTTCAACATGC
TTTTCCCCTGAAAGATTGCAAGACGAATTTTATGGGAAATTCGTATCAAA
AATGAAGAGAGAAATGCAGAAACCGTTGAACCAACAAGATGGTTTTTATA
AACCATCGACAATTTCATCTAAACTCAGTGCGGTTGCAAAATTCCTGAAA
TTTACGACAGAGAGAAGGATATTTTTTGGTCTTACCTGCAATCAAATATC
CATATTCAGAGAGCAAATTAAAACCCATACAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036560-exon-sc0001480-1575043694:8824..9201 | TCONS_00036560-exon-sc0001480-1575043694:8824..9201 | Clytia hemisphaerica | exon |
| TCONS_00036560-exon-sc0001480-1575043694:8106..8319 | TCONS_00036560-exon-sc0001480-1575043694:8106..8319 | Clytia hemisphaerica | exon |
| TCONS_00036560-exon-sc0001480-1575043694:4699..4754 | TCONS_00036560-exon-sc0001480-1575043694:4699..4754 | Clytia hemisphaerica | exon |
| TCONS_00036560-exon-sc0001480-1510915933:8824..9201 | TCONS_00036560-exon-sc0001480-1510915933:8824..9201 | Clytia hemisphaerica | exon |
| TCONS_00036560-exon-sc0001480-1510915933:8106..8319 | TCONS_00036560-exon-sc0001480-1510915933:8106..8319 | Clytia hemisphaerica | exon |
| TCONS_00036560-exon-sc0001480-1510915933:4699..4754 | TCONS_00036560-exon-sc0001480-1510915933:4699..4754 | Clytia hemisphaerica | exon |
| TCONS_00036560-exon-sc0001480-1491911889:8824..9201 | TCONS_00036560-exon-sc0001480-1491911889:8824..9201 | Clytia hemisphaerica | exon |
| TCONS_00036560-exon-sc0001480-1491911889:8106..8319 | TCONS_00036560-exon-sc0001480-1491911889:8106..8319 | Clytia hemisphaerica | exon |
| TCONS_00036560-exon-sc0001480-1491911889:4699..4754 | TCONS_00036560-exon-sc0001480-1491911889:4699..4754 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001480 | supercontig | sc0001480:4699..9201 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023109 | Integrase_recombinase_N |
Blast
The following BLAST results are available for this feature:
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