TCONS_00036377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036377
Unique NameTCONS_00036377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036377 ID=TCONS_00036377|Name=TCONS_00036377|organism=Clytia hemisphaerica|type=transcript|length=604bp
GACGGCAACTACCGTATGACGTGTGAAAGTGTCATGCGTGTTTTACGTGA
AAGCAAAGACAGTTTAATGGCCGTTCTCGAAGCTTTCGTTTACGATCCTT
TATTGAACTGGCGCTTGATTGATAcggAGAAACGATCAAAAGGAAGACAA
GAATCTTATTCAACGCACAATGAAGGTCACGGTAAGAAATTTGGACACTT
CTAAATCTCCTATTCTCCTCCTATTATGATTTAGAGAGAACAGCTGAACA
ACAGATTTAGAGTTCTTATAGTAAGCTTATACTTCTTCCAAAAACGACTG
GAATCCTACGGAGttgatcttatcggagtttaaCGTGGATCGAACGCACG
ACCGTCCACGCGGTAAAAAGGTTACCAATCCGGAACACCCGACACAAGAT
CCGGAACACAGTAATAATAAACCGGAAGCCGTCAATAAGACAGCGTTACA
AATCGTGAAACATGTTCGTGATAAATTGACGGGGCGCGATTTCAACAAAG
ACGAAGCGATAGATGTTGACACACAAGTTGATTTATTGATTCAACAAGCC
ACTTCACATGCTAACCTCTGCCAAGCTTATATTGGATGgTGCCCGTTCTG
GTAA
Run BLAST on NCBI

transcript from alignment at sc0001452:31941..33064-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036377 ID=TCONS_00036377|Name=TCONS_00036377|organism=Clytia hemisphaerica|type=transcript|length=1124bp|location=Sequence derived from alignment at sc0001452:31941..33064- (Clytia hemisphaerica)
GACGGCAACTACCGTATGACGTGTGAAAGTGTCATGCGTGTTTTACGTGA
AAGCAAAGACAGTTTAATGGCCGTTCTCGAAGCTTTCGTTTACGATCCTT
TATTGAACTGGCGCTTGATTGATAGTAAGTTGTTTTTGTTACCACTTGTA
TAGCTCTCGCTAATTTTAATTCAAATTACCTTTCCCATTTTATTACCTTT
GGGAATCGAACATCTATCGAATGAAAAAGGATTCTGTTTCAAGTAAGATA
ACGAGTCTTGGGGATTTTTCTTTATACAATAGGTATAAAGCAAAGTAAAT
AGGTCCCACACTGCAAACAGTGTCAATGGTCACTATTAATGTTTTGTCAA
TTTTTTTTCAGCGGAGAAACGATCAAAAGGAAGACAAGAATCTTATTCAA
CGCACAATGAAGGTCACGGTAAGAAATTTGGACACTTCTAAATCTCCTAT
TCTCCTCCTATTATGATTTAGAGAGAACAGCTGAACAACAGATTTAGAGT
TCTTATAGTAAGCTTATACTTCTTCCAAAAACGACTGGAATCCTACGGAG
TTGATCTTATCGGAGTTTAACGTGGATCGAACGCACGACCGTCCACGCGG
TAAAAAGGTTACCAATCCGGAACACCCGACACAAGATCCGGAACACAGTA
ATAATAAACCGGAAGCCGTCAATAAGACAGCGTTACAAATCGTGAAACAT
GTTCGTGATAAATTGACGGGGCGCGATTTCAACAAAGACGAAGCGATAGA
TGTTGACACACAAGTTGATTTATTGATTCAACAAGCCACTTCACATGCTA
ACCTCTGCCAAGCTTATATTGGATGGTAAGTATATTTTCACTTCACGTTC
ACGTTTTTAATAAATAGATAAAGTCAGGAGGAAATGTAGAATTCTCTCAT
CCCTACAAGGAATATAGCATGTTCTGAATATTCTGGACAACTAGATTTAA
CCGCATATATACAATATATACTCTGACCTCTCGTTTTTTTACATTTTGAT
TTCTGCCCTCCTTTATTAGATATAAGGTCTAACGTTTTCGGTCTTGAGTG
GGAATTTATCTTGACCTAGTCACAAACAAACTAAAAATTTAATCTTTCCT
TTTTTCAGGTGCCCGTTCTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021421XLOC_021421Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036377-exon-sc0001452-1575043694:32941..33064TCONS_00036377-exon-sc0001452-1575043694:32941..33064Clytia hemisphaericaexon
TCONS_00036377-exon-sc0001452-1575043694:32240..32703TCONS_00036377-exon-sc0001452-1575043694:32240..32703Clytia hemisphaericaexon
TCONS_00036377-exon-sc0001452-1575043694:31941..31956TCONS_00036377-exon-sc0001452-1575043694:31941..31956Clytia hemisphaericaexon
TCONS_00036377-exon-sc0001452-1510915933:32941..33064TCONS_00036377-exon-sc0001452-1510915933:32941..33064Clytia hemisphaericaexon
TCONS_00036377-exon-sc0001452-1510915933:32240..32703TCONS_00036377-exon-sc0001452-1510915933:32240..32703Clytia hemisphaericaexon
TCONS_00036377-exon-sc0001452-1510915933:31941..31956TCONS_00036377-exon-sc0001452-1510915933:31941..31956Clytia hemisphaericaexon
TCONS_00036377-exon-sc0001452-1491911889:32941..33064TCONS_00036377-exon-sc0001452-1491911889:32941..33064Clytia hemisphaericaexon
TCONS_00036377-exon-sc0001452-1491911889:32240..32703TCONS_00036377-exon-sc0001452-1491911889:32240..32703Clytia hemisphaericaexon
TCONS_00036377-exon-sc0001452-1491911889:31941..31956TCONS_00036377-exon-sc0001452-1491911889:31941..31956Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001452supercontigsc0001452:31941..33064 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.26149	1.6917	0.475228	0.917431	0.802801	0.966468	0.129421	0.245477	0.272344	0.525781	0.211321	0.72696	0.425338	0.0711096	0.548205	0.516208	0.387089	0.482341	0.916225	0.515978	1.91471	2.06867	1.9593	1.56384	0	0	2.01565	2.61504	2.3192	0.536356
Blast
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BLAST of TCONS_00036377 vs. Swiss-Prot (Human)
Match: MTOR (Serine/threonine-protein kinase mTOR OS=Homo sapiens GN=MTOR PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.109e-26
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 2 
Query:  419 KPEAVNKTALQIVKHVRDKLTGRDFNKDEAIDVDTQVDLLIQQATSHANLCQAYIGWCPFW 601
            KPEA+NK A+QI+  VRDKLTGRDF+ D+ +DV TQV+LLI+QATSH NLCQ YIGWCPFW
Sbjct: 2489 KPEALNKKAIQIINRVRDKLTGRDFSHDDTLDVPTQVELLIKQATSHENLCQCYIGWCPFW 2549

HSP 2 Score: 88.5817 bits (218), Expect = 8.872e-20
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 DGNYRMTCESVMRVLRESKDSLMAVLEAFVYDPLLNWRLIDT----EKRSKGRQESYST 165
            DGNYR+TC +VM VLRE KDS+MAVLEAFVYDPLLNWRL+DT     KRS+ R +SYS 
Sbjct: 2393 DGNYRITCHTVMEVLREHKDSVMAVLEAFVYDPLLNWRLMDTNTKGNKRSRTRTDSYSA 2451
The following BLAST results are available for this feature:
BLAST of TCONS_00036377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MTOR8.109e-2673.77Serine/threonine-protein kinase mTOR OS=Homo sapie... [more]
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