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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036346 ID=TCONS_00036346|Name=TCONS_00036346|organism=Clytia hemisphaerica|type=transcript|length=2484bp
ttcaatcctatatggttcatcataaagaaaatcaagttgaccgttcaagc
tatcaaacgtcgtttggttagatacccctgcttgtaaatcaagttttgtt
tgtaagtggttgatacattagtattcagggcttacttcataataggacta
tttcaatgatcttaagttatcaaaaagagcaaaaaaattaTTCCGGCCGG
CCACATGAGAACTTTTTTCCTTCATctgcattccggaaacactacatttt
tttattttcgcctaagcACAAGATTTTTCCATAACTTCAGAAAAAAGCTC
TTTCTAATAGTTGTTTTGGTGAACGTGACGGTCTATTGAATTACAAATTA
CTCCACGTATACATTTCTTTCCTTCAGCTAGGTACAaacaggataaatta
ttttgtccCTAGACGTACTCCTGTGTTGTAAAAGACCGAAATAAACAAGA
AGACATtactattaaaaaaaattctgcagGAGTAGTTAGTTATTAGACCA
TCGTATTCTCCCAAATGATTATTTCATACCGGTTATCCTCAGAAAAATgg
cggaaaattttcaaaaaaggtcagGAAAACATTAGTACAATCGAGCTGGA
AATCTTATGCAAAATGATTGAAGTCTATTATtgattggaaattttttgag
CCCTTTTGTCTAATACTCAAAGTCAAAATGAACCACTCTTAATAAAATAA
TGACCAGTTGACGAGTATGTGCTGAGTAATATTGCCAGAGGTGAAAACTG
AGCTTGCGTTGTTCTAGTTCTATTAATTAATAACATAATACATTATTAAC
GTACATTATCATACTGTTGCCTCCACCGAGgacaatattttcagtacagc
cctcactaaccagtcattattttatttgttaaccgtttccttttTTAACT
TGGTCGATTATTCAAAAAGACTGGGGAAGACGACTGAAAAAAGATTAAGA
CTTGTGTGAATTTCTAACGTCTGAAatggaaaaattaagaaaaatgattt
caacGCCACTCAACGCAGtgtctattttctttaaaaaaataacatcacaa
TGAGTTTTCCGATGTATATAAGCCTGTCGTTAAGAGAAAAGAACCAATCA
CATTGCATAAAATGTTGTGCACGTACAAGCTGTGTTAAAAAAAAACGGTT
AACAATACGCATTTACTTGATACAAGGGCTAACTTTTTCCAATCGATTGA
TGGATATCAATTTATTCCAATAATCTATGGGTCATCAAGAGGCTATTTCA
AAATCATCTTGAATATCGGTTATTGatgattgttatttttcatcaGTCAT
CTTTGCTCTAGAGGCTATTGATGAATAATCAATGAACTAGGTGTAATCAA
GCCTCCCAGCCTTAAAAACCTGATTATTATCAAGATCAATTTAAGTCCAA
TCCATATATATATAATCTGACAACGGAAAAGTTATCGATTGTATCAAGTG
AGAGTGGAGATTCCGGAATGAATAAAATATGGatgcaaaataaaaatatt
tgtgattgccaGCCTTTAACTTCCATAAGTTTGGAGCACAATATTTTGGT
TCAAGGGTCCAATGGGCATTTCTTGGTGGTATCAGGATAAATTCAATAAT
CATAAACCAAACAATCATCGACACCAAAAAGGACAGGGAGTTCCTTATCC
CCTGAACAAAGGGAGTGCTACAGATTAAACACTGGCATAATAAACTTTAG
TCTTAATATGTTAGCAGCACTATCCCAggtaaaaggaaaaacaaaaaacc
acTCCATTTTGGAATAATCAAAGTTATAGCAGAAgagatttttcatttca
aaacaaacttaaacTTTGGACCCACTTTCTGCTCTGAAGCTTAGTATTAT
CTCTTTcggaacaaaaaaagaaatataaactcACCTTTACGATGAAAAAT
CTGGTAGATTGACAAGCTCCACAACATAAActctaaaaaagtttttttac
tagTATTATTATTGAAACAacgaaatttgattgaaaagtcTTTGATTGAT
TGATGTTCATCAGAAAAAGCGTCTGTCtatctttgaaaaaactaaGATTT
AATTCTCGTCGGAAGTTTTGCGCGCTCTTTTTACATGACAGAATACAAAA
CCGGGGGTAAAAGTTAATGCTTTGTAAATAAAGAACAGTTtatattaaaa
gaaaattatacagaaaaataaaaaattatgttacgAATTTAATATATAGT
TTAAATTATCGTTTCAGATGTATAAGACTCGAATATTAACTCAAAGAATC
ATGTAGTTTATACTACTTGACCCCcgtattatttttatttatgattGAAA
ATCGCGCGGAACCGATGGGTTAGAAGGACGTCCGTTAGACGTCCTATAGA
AGTCCGACGGATAAAGGTCCGCTACAGGCGTCTATAGGACGTCTTTTTTG
GACGGGGACGGGACATGGACGGACGGACGTAATTTAGACGTCTTCAGGAC
GTCGGTCGGACTTTCTGTGCCCACTGGGTAAGAT Run BLAST on NCBI transcript from alignment at sc0001447:10595..13078 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036346 ID=TCONS_00036346|Name=TCONS_00036346|organism=Clytia hemisphaerica|type=transcript|length=2484bp|location=Sequence derived from alignment at sc0001447:10595..13078 (Clytia hemisphaerica)
ATCTTACCCAGTGGGCACAGAAAGTCCGACCGACGTCCTGAAGACGTCTA
AATTACGTCCGTCCGTCCATGTCCCGTCCCCGTCCAAAAAAGACGTCCTA
TAGACGCCTGTAGCGGACCTTTATCCGTCGGACTTCTATAGGACGTCTAA
CGGACGTCCTTCTAACCCATCGGTTCCGCGCGATTTTCaatcataaataa
aaataatacgGGGGTCAAGTAGTATAAACTACATGATTCTTTGAGTTAAT
ATTCGAGTCTTATACATCTGAAACGATAATTTAAACTATATATTAAATTc
gtaacataattttttatttttctgtataattttcttttaatataAACTGT
TCTTTATTTACAAAGCATTAACTTTTACCCCCGGTTTTGTATTCTGTCAT
GTAAAAAGAGCGCGCAAAACTTCCGACGAGAATTAAATCttagttttttc
aaagataGACAGACGCTTTTTCTGATGAACATCAATCAATCAAAgacttt
tcaatcaaatttcgtTGTTTCAATAATAATActagtaaaaaaactttttt
agagTTTATGTTGTGGAGCTTGTCAATCTACCAGATTTTTCATCGTAAAG
GTgagtttatatttctttttttgttccgAAAGAGATAATACTAAGCTTCA
GAGCAGAAAGTGGGTCCAAAgtttaagtttgttttgaaatgaaaaatctc
TTCTGCTATAACTTTGATTATTCCAAAATGGAgtggttttttgtttttcc
ttttaccTGGGATAGTGCTGCTAACATATTAAGACTAAAGTTTATTATGC
CAGTGTTTAATCTGTAGCACTCCCTTTGTTCAGGGGATAAGGAACTCCCT
GTCCTTTTTGGTGTCGATGATTGTTTGGTTTATGATTATTGAATTTATCC
TGATACCACCAAGAAATGCCCATTGGACCCTTGAACCAAAATATTGTGCT
CCAAACTTATGGAAGTTAAAGGCtggcaatcacaaatatttttattttgc
atCCATATTTTATTCATTCCGGAATCTCCACTCTCACTTGATACAATCGA
TAACTTTTCCGTTGTCAGATTATATATATATGGATTGGACTTAAATTGAT
CTTGATAATAATCAGGTTTTTAAGGCTGGGAGGCTTGATTACACCTAGTT
CATTGATTATTCATCAATAGCCTCTAGAGCAAAGATGACtgatgaaaaat
aacaatcatCAATAACCGATATTCAAGATGATTTTGAAATAGCCTCTTGA
TGACCCATAGATTATTGGAATAAATTGATATCCATCAATCGATTGGAAAA
AGTTAGCCCTTGTATCAAGTAAATGCGTATTGTTAACCGTTTTTTTTTAA
CACAGCTTGTACGTGCACAACATTTTATGCAATGTGATTGGTTCTTTTCT
CTTAACGACAGGCTTATATACATCGGAAAACTCAttgtgatgttattttt
ttaaagaaaatagacaCTGCGTTGAGTGGCgttgaaatcatttttcttaa
tttttccatTTCAGACGTTAGAAATTCACACAAGTCTTAATCTTTTTTCA
GTCGTCTTCCCCAGTCTTTTTGAATAATCGACCAAGTTAAaaaaggaaac
ggttaacaaataaaataatgactggttagtgagggctgtactgaaaatat
tgtcCTCGGTGGAGGCAACAGTATGATAATGTACGTTAATAATGTATTAT
GTTATTAATTAATAGAACTAGAACAACGCAAGCTCAGTTTTCACCTCTGG
CAATATTACTCAGCACATACTCGTCAACTGGTCATTATTTTATTAAGAGT
GGTTCATTTTGACTTTGAGTATTAGACAAAAGGGctcaaaaaatttccaa
tcaATAATAGACTTCAATCATTTTGCATAAGATTTCCAGCTCGATTGTAC
TAATGTTTTCctgaccttttttgaaaattttccgccATTTTTCTGAGGAT
AACCGGTATGAAATAATCATTTGGGAGAATACGATGGTCTAATAACTAAC
TACTCctgcagaattttttttaatagtaATGTCTTCTTGTTTATTTCGGT
CTTTTACAACACAGGAGTACGTCTAGggacaaaataatttatcctgttTG
TACCTAGCTGAAGGAAAGAAATGTATACGTGGAGTAATTTGTAATTCAAT
AGACCGTCACGTTCACCAAAACAACTATTAGAAAGAGCTTTTTTCTGAAG
TTATGGAAAAATCTTGTgcttaggcgaaaataaaaaaatgtagtgtttcc
ggaatgcagATGAAGGAAAAAAGTTCTCATGTGGCCGGCCGGAAtaattt
ttttgctctttttgataacttaagatcattgaaatagtcctattatgaag
taagccctgaatactaatgtatcaaccacttacaaacaaaacttgattta
caagcaggggtatctaaccaaacgacgtttgatagcttgaacggtcaact
tgattttctttatgatgaaccatataggattgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036346-exon-sc0001447-1491911889:10595..13078 | TCONS_00036346-exon-sc0001447-1491911889:10595..13078 | Clytia hemisphaerica | exon |
| TCONS_00036346-exon-sc0001447-1510915933:10595..13078 | TCONS_00036346-exon-sc0001447-1510915933:10595..13078 | Clytia hemisphaerica | exon |
| TCONS_00036346-exon-sc0001447-1575043694:10595..13078 | TCONS_00036346-exon-sc0001447-1575043694:10595..13078 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001447 | supercontig | sc0001447:10595..13078 . |
Blast
The following BLAST results are available for this feature:
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