TCONS_00036313 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036313
Unique NameTCONS_00036313
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036313 ID=TCONS_00036313|Name=TCONS_00036313|organism=Clytia hemisphaerica|type=transcript|length=501bp
AGTCGATCTTGTACCATTGAGATAATCTGGTCATTAGGATCATGGTATAC
AAAATTTATGTCCGCGATCATGAGGACGTTGATCTCATCAAATATATATG
GCAACTGTCCTAGGAAAGTAGCTACTTCAATACAGCTTGTCCATTTCCTT
GTTATAGCTGTCATGTTAGCAAAAAGTTGCTATTCTACCCATTCAAGATG
AAAGGTctatgtttggaaattttggccaaataaaCTTAGGGAGGAAATGA
TATATAAGTAATTAAACTTAATGAGCCTCATTGACCCAATCAAGACTGGG
TGGGAGGAAAGAAAAAggtattatgcattatgcatatccatataattaca
taaagattgaaataaaactGCTTGTTTATCACACTTACTGTAATGTTTca
acaaacttggaaaaaaaagaaaatttcgaaatccccactgaaatttttat
tctaattcTGTGTCCCCACTGGTATtttctgtctttgaaaaatccccact
g
Run BLAST on NCBI

transcript from alignment at sc0001439:31221..31721

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036313 ID=TCONS_00036313|Name=TCONS_00036313|organism=Clytia hemisphaerica|type=transcript|length=501bp|location=Sequence derived from alignment at sc0001439:31221..31721 (Clytia hemisphaerica)
cagtggggatttttcaaagacagaaaATACCAGTGGGGACACAgaattag
aataaaaatttcagtggggatttcgaaattttcttttttttccaagtttg
ttgAAACATTACAGTAAGTGTGATAAACAAGCagttttatttcaatcttt
atgtaattatatggatatgcataatgcataataccTTTTTCTTTCCTCCC
ACCCAGTCTTGATTGGGTCAATGAGGCTCATTAAGTTTAATTACTTATAT
ATCATTTCCTCCCTAAGtttatttggccaaaatttccaaacatagACCTT
TCATCTTGAATGGGTAGAATAGCAACTTTTTGCTAACATGACAGCTATAA
CAAGGAAATGGACAAGCTGTATTGAAGTAGCTACTTTCCTAGGACAGTTG
CCATATATATTTGATGAGATCAACGTCCTCATGATCGCGGACATAAATTT
TGTATACCATGATCCTAATGACCAGATTATCTCAATGGTACAAGATCGAC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021371XLOC_021371Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036313-exon-sc0001439-1491911889:31221..31721TCONS_00036313-exon-sc0001439-1491911889:31221..31721Clytia hemisphaericaexon
TCONS_00036313-exon-sc0001439-1510915933:31221..31721TCONS_00036313-exon-sc0001439-1510915933:31221..31721Clytia hemisphaericaexon
TCONS_00036313-exon-sc0001439-1575043694:31221..31721TCONS_00036313-exon-sc0001439-1575043694:31221..31721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001439supercontigsc0001439:31221..31721 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09725	1.00234	1.06087	1.01187	0.715333	0.302871	1.09344	1.02367	0.765859	0.277743	1.47714	0.404589	0.323221	0	0.137982	0.432509	0.182418	0.616	0.904094	0.49925	0.633907	0.549904	0.139308	0	0	0.935454	0.3549	0	0	0.151129
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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