TCONS_00035927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035927
Unique NameTCONS_00035927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035927 ID=TCONS_00035927|Name=TCONS_00035927|organism=Clytia hemisphaerica|type=transcript|length=289bp
CTTAAAGAAGCGAAAGTCATTCCggtcttcaaaaacaaaggatcTCCTTT
TGATGCTGAAAATTACAGACCCATTTCACTTCTTTCAAACAtcgacaaaa
tttttcaaaaacttatgcATAAACAACTGATAAATTTTCTTGATCAGACA
AATTCCATCTATTCTTTACAATTCGGTTTTCGCTATGGACATTCTACTGA
GACAGCCCTTCTTTACTGTGTTAACCAAATCTCAAGTGCCTTGGATGAAG
GTGATTTCGGTTGTTCCATCTTTATTGATCTGCAAAAAG
Run BLAST on NCBI

transcript from alignment at sc0001388:16678..16966

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035927 ID=TCONS_00035927|Name=TCONS_00035927|organism=Clytia hemisphaerica|type=transcript|length=289bp|location=Sequence derived from alignment at sc0001388:16678..16966 (Clytia hemisphaerica)
CTTTTTGCAGATCAATAAAGATGGAACAACCGAAATCACCTTCATCCAAG
GCACTTGAGATTTGGTTAACACAGTAAAGAAGGGCTGTCTCAGTAGAATG
TCCATAGCGAAAACCGAATTGTAAAGAATAGATGGAATTTGTCTGATCAA
GAAAATTTATCAGTTGTTTATgcataagtttttgaaaaattttgtcgaTG
TTTGAAAGAAGTGAAATGGGTCTGTAATTTTCAGCATCAAAAGGAgatcc
tttgtttttgaagaccGGAATGACTTTCGCTTCTTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021095XLOC_021095Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035927-exon-sc0001388-1491911889:16678..16966TCONS_00035927-exon-sc0001388-1491911889:16678..16966Clytia hemisphaericaexon
TCONS_00035927-exon-sc0001388-1510915933:16678..16966TCONS_00035927-exon-sc0001388-1510915933:16678..16966Clytia hemisphaericaexon
TCONS_00035927-exon-sc0001388-1575043694:16678..16966TCONS_00035927-exon-sc0001388-1575043694:16678..16966Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001388supercontigsc0001388:16678..16966 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.41062	3.87472	1.99952	2.72161	2.38151	1.8819	0.567608	1.06278	0.313989	0.460828	0.447291	1.17613	0.880868	1.82958	1.25347	1.54901	0.331427	0	3.09608	1.76125	0	1.24924	1.48542	0	0.948021	0	0.541753	0	0.780557	0.99851
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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