TCONS_00035798 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035798
Unique NameTCONS_00035798
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035798 ID=TCONS_00035798|Name=TCONS_00035798|organism=Clytia hemisphaerica|type=transcript|length=485bp
gcacaaaatgacgtcatcaaacaaAAGGCATTGAAGCGTAACCAGAAAGC
GTTAACCCTCATTAACTGGGTGGTTGCCATGACATTTCTCTCGTCATCCG
GTATGGTTGTAATGCGGTCTATTCTGATAACGGAAGACTTTATCGATCCG
GAAGAATGGGCTTTAATCAAAGCTTGGGAATATGAGATTGTCCAGACAGG
CCGGTTAGTATGGTGCATCAACGCGATTGTAAATCCAttgttatattttt
ggaaacacccaatgtttcgaaaaaaagctAGTCTCGTTTTGAAGCGAAAA
CGATTGAGGTTGGTGATGCACCCCAAAATAGCTGTTGTGGAACCGACGGA
TCATGGTGGCGAATGTAAACACGAAAGCGCTACCGATGAATATTCcagat
tttcttaacttttcgtcATATTTTGATCTTATTATAAACgatccgaaggg
ctagagttagcctagttaactaagcccgtattcac
Run BLAST on NCBI

protein sequence of TCONS_00035798-protein

>TCONS_00035798-protein ID=TCONS_00035798-protein|Name=TCONS_00035798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
AQNDVIKQKALKRNQKALTLINWVVAMTFLSSSGMVVMRSILITEDFIDP
EEWALIKAWEYEIVQTGRLVWCINAIVNPLLYFWKHPMFRKKASLVLKRK
RLRLVMHPKIAVVEPTDHGGECKHESATDEYSRFS
Run BLAST on NCBI

transcript from alignment at sc0001363:36803..37287

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035798 ID=TCONS_00035798|Name=TCONS_00035798|organism=Clytia hemisphaerica|type=transcript|length=485bp|location=Sequence derived from alignment at sc0001363:36803..37287 (Clytia hemisphaerica)
gtgaatacgggcttagttaactaggctaactctagcccttcggatcGTTT
ATAATAAGATCAAAATATgacgaaaagttaagaaaatctgGAATATTCAT
CGGTAGCGCTTTCGTGTTTACATTCGCCACCATGATCCGTCGGTTCCACA
ACAGCTATTTTGGGGTGCATCACCAACCTCAATCGTTTTCGCTTCAAAAC
GAGACTagctttttttcgaaacattgggtgtttccaaaaatataacaaTG
GATTTACAATCGCGTTGATGCACCATACTAACCGGCCTGTCTGGACAATC
TCATATTCCCAAGCTTTGATTAAAGCCCATTCTTCCGGATCGATAAAGTC
TTCCGTTATCAGAATAGACCGCATTACAACCATACCGGATGACGAGAGAA
ATGTCATGGCAACCACCCAGTTAATGAGGGTTAACGCTTTCTGGTTACGC
TTCAATGCCTTttgtttgatgacgtcattttgtgc

Coding sequence (CDS) from alignment at sc0001363:36803..37287

>TCONS_00035798 ID=TCONS_00035798|Name=TCONS_00035798|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0001363:36803..37287 (Clytia hemisphaerica)
ttaagaaaatctgGAATATTCATCGGTAGCGCTTTCGTGTTTACATTCGC
CACCATGATCCGTCGGTTCCACAACAGCTATTTTGGGGTGCATCACCAAC
CTCAATCGTTTTCGCTTCAAAACGAGACTagctttttttcgaaacattgg
gtgtttccaaaaatataacaaTGGATTTACAATCGCGTTGATGCACCATA
CTAACCGGCCTGTCTGGACAATCTCATATTCCCAAGCTTTGATTAAAGCC
CATTCTTCCGGATCGATAAAGTCTTCCGTTATCAGAATAGACCGCATTAC
AACCATACCGGATGACGAGAGAAATGTCATGGCAACCACCCAGTTAATGA
GGGTTAACGCTTTCTGGTTACGCTTCAATGCCTTttgtttgatgacgtca
ttttgtgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021007XLOC_021007Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035798-exon-sc0001363-1491911889:36803..37287TCONS_00035798-exon-sc0001363-1491911889:36803..37287Clytia hemisphaericaexon
TCONS_00035798-exon-sc0001363-1510915933:36803..37287TCONS_00035798-exon-sc0001363-1510915933:36803..37287Clytia hemisphaericaexon
TCONS_00035798-exon-sc0001363-1575043694:36803..37287TCONS_00035798-exon-sc0001363-1575043694:36803..37287Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035798-proteinTCONS_00035798-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001363supercontigsc0001363:36803..37287 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.231063	0.058113	0.113375	0	0	0.535888	1.03677	2.23825	2.02621	1.07003	0.163792	1.04444	0.346329	0.0232817	0.159208	0.169737	0	0.0859795	0	0.0963057	0.261	0.208818	0.562382	0	0.693189	0.36504	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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